HG10006664 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006664
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Alba domain-containing protein
Location	Chr07: 20846636 .. 20848401 (-)
RNA-Seq Expression	HG10006664
Synteny	HG10006664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAATTGTAGAAGGCGTGAATTCCATGAACTTGGGTTCCGATTCATATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAATCTCGCTAAGGTTTGCTATTTCCCAATGTTTCGATTCCATTTACTATTTTGAGGGTTTTTGTTTTCCAAGTGATTATTGTATCCCGTTTAATTATAATGTTCTTGTGTTTCTGATTTTTGTTTTTGGTTTTCAACGTAGAGGTACATGCAGCAGCATGAGGAGGTTGAACTTTCTGCTCTGGGAATGGGTAATTTTGCTGCTTTGTGATTTCACTTTGTTTTTAAGTACTTTTCCCGACTTTAAATCATGAACCCTAGAAGGTATGGGACTGTGTAATTGTATTTGGTTTGAAGTCTGCCTTAAAAGGACTTTAAATGCTGAGTTCTGGGACTATTAGTTAATGATGAAGTGAAGTAATGTGGAATTTTTGGGTAGCTTATATTCAACCTTCGCTTGAGCAATTTGCAATTCGTTTGTTTCCTTTCTTGTTGCCGATGGCCATTTGACTCTCTTTTAGTCTTCCTTCGATCTGAGGATCTCAATACTTCTCATCTCACTAACTGGATGCTATGCCACAGTATGCGGATTAACATTAACAATGCGAAGTGAAATTGTTTCTTTTGTATTTTTGTATTTCTTTTGCATCTTTTTGGATATTATATTCATCAATAAAATTGTTTCTTATCCCAAAATAATAATAATAATAATAATAATTAACAATGATGAAAAACATTTGAATGACTGGGGGGACTTGAGTATAATTGGTACTAAATGGACTGTGAATGATGTTTTGGAAAAGTTTGGTAGATATATACTAATATTATCTTTGTTGATATCAAGTTTTTGGATGATTGATATTCACCTTGTGTTCAGAATGAGGCCAACGGGCTGGGTTTAAGAAATTTTGTTGAAGATTTTTCCATCATTGGTCACATTTGGTTTTTGGTCTTTTAATCTACTTTTACCTTTGAAAGAAATTTATCACCGTATCCTCCATTAATAAGTGTATGTACTTGCAATGTTTTGCAGCAATTGCCACGGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGAGTAAGATTTCTGGCTTTCTTACTTTTCCAGACAATGTTTACTTTTGTTCCTTTTAGTGACTTGCATCAAATCTACAGAGATTGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGGTGAAGATTACTCTATGTATATTTAAGATCTCCTAATAACTAAATACTTGACAAATGCAAACTAGGACATTTATTCAGTATGTAGATTTTTTTTATAATGGCGCTGATTAGCATAATCATGGTTCCATTTGCATTCAGATATTAAAATAATGACAAGACTGGTCTGCAATGCTTAGTTCCATGGTCTATGTTTTGTTGTATGACGAGGATATGAAGTTGTTAAATTCTTTTATATATTCATTATTTGTTAGATTGGTTACCTGTTTACCTTAAATGAAAAGGTATAAGTTAGCCTTCTTCTACCACCATGGAACTCAATGAATTTCTGATTTTGTTTCTCCAAGAGCTTCTTGAATAGTTATTGTAACTTTGGCCTCATCAGATTGAGATATTGCTGGGGAAAACCGAAAACTTCGATGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGGGAGATAGGCGATGCAGATGAGCAGCATTAA

mRNA sequence

ATGGAAGAAATTGTAGAAGGCGTGAATTCCATGAACTTGGGTTCCGATTCATATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAATCTCGCTAAGAGGTACATGCAGCAGCATGAGGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACGGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGATGACTTGCATCAAATCTACAGAGATTGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATTGAGATATTGCTGGGGAAAACCGAAAACTTCGATGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGGGAGATAGGCGATGCAGATGAGCAGCATTAA

Coding sequence (CDS)

ATGGAAGAAATTGTAGAAGGCGTGAATTCCATGAACTTGGGTTCCGATTCATATAAGAAGAATCGGATTCAGGTCTCCAACACCAAGAAACCATTGTTCTTCTATGTCAATCTCGCTAAGAGGTACATGCAGCAGCATGAGGAGGTTGAACTTTCTGCTCTGGGAATGGCAATTGCCACGGTTGTTACAGTTGCTGAAATTTTGAAAAACAATGGATTGGCTGTTGAGAAGATGACTTGCATCAAATCTACAGAGATTGCAACCTCAACTGTTGATATCAAGGATGACTCAAGAGGAAGACCTGTCCAGAAGGCTAAGATTGAGATATTGCTGGGGAAAACCGAAAACTTCGATGAATTGATGGCCGCTGCTGCTGAGGAAAGGGGGGAGATAGGCGATGCAGATGAGCAGCATTAA

Protein sequence

MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELMAAAAEERGEIGDADEQH

Homology

[Close]

BLAST of HG10006664 vs. NCBI nr
Match: XP_008457716.1 (PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0061596.1 DNA/RNA-binding protein Alba-like protein [Cucumis melo var. makuwa] >TYJ97805.1 DNA/RNA-binding protein Alba-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-56
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGLAVEK       +IATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL
Sbjct: 61  VVTVAEILKNNGLAVEK-------KIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEERGEIGDADEQ
Sbjct: 121 MAAAAEERGEIGDADEQ 130

[Close]

BLAST of HG10006664 vs. NCBI nr
Match: XP_004139317.1 (uncharacterized protein At2g34160 [Cucumis sativus] >KAE8651529.1 hypothetical protein Csa_019360 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-55
Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGLA+EK       +IATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL
Sbjct: 61  VVTVAEILKNNGLALEK-------KIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEERGEIG+ADEQ
Sbjct: 121 MAAAAEERGEIGEADEQ 130

[Close]

BLAST of HG10006664 vs. NCBI nr
Match: XP_038890892.1 (uncharacterized protein At2g34160-like [Benincasa hispida])

HSP 1 Score: 225.3 bits (573), Expect = 3.2e-55
Identity = 125/140 (89.29%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGS---DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMA 60
           MEEIVEGVNSMNL S   DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMA
Sbjct: 1   MEEIVEGVNSMNLSSDSYDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMA 60

Query: 61  IATVVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENF 120
           IATVVTVAEILKNNGLA+EK       +IATSTVDIKDDSRGRPVQKAKIEILLGKT+NF
Sbjct: 61  IATVVTVAEILKNNGLAIEK-------KIATSTVDIKDDSRGRPVQKAKIEILLGKTKNF 120

Query: 121 DELMAAAAEERGEIGDADEQ 138
           DELMAAAAEERGEIGDADEQ
Sbjct: 121 DELMAAAAEERGEIGDADEQ 133

[Close]

BLAST of HG10006664 vs. NCBI nr
Match: KAG6599408.1 (hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 224.6 bits (571), Expect = 5.4e-55
Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 266 MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 325

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGLAVEK       +I TSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL
Sbjct: 326 VVTVAEILKNNGLAVEK-------KITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 385

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEER E GDADEQ
Sbjct: 386 MAAAAEERAETGDADEQ 395

[Close]

BLAST of HG10006664 vs. NCBI nr
Match: XP_022946216.1 (uncharacterized protein At2g34160-like [Cucurbita moschata] >KAG7030395.1 hypothetical protein SDJN02_08742 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.6 bits (571), Expect = 5.4e-55
Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGLAVEK       +I TSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL
Sbjct: 61  VVTVAEILKNNGLAVEK-------KITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEER E GDADEQ
Sbjct: 121 MAAAAEERAETGDADEQ 130

[Close]

BLAST of HG10006664 vs. ExPASy Swiss-Prot
Match: O22969 (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.2e-46
Identity = 101/128 (78.91%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEI +GVN+MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTV EILKNNG AVEK       +I TSTVDIKDD+RGRPVQKAKIEI L K+E FDEL
Sbjct: 61  VVTVTEILKNNGFAVEK-------KIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDEL 120

Query: 121 MAAAAEER 129
           MAAA EE+
Sbjct: 121 MAAANEEK 121

[Close]

BLAST of HG10006664 vs. ExPASy TrEMBL
Match: A0A5D3BH52 (DNA/RNA-binding protein Alba-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00150 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.1e-57
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGLAVEK       +IATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL
Sbjct: 61  VVTVAEILKNNGLAVEK-------KIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEERGEIGDADEQ
Sbjct: 121 MAAAAEERGEIGDADEQ 130

[Close]

BLAST of HG10006664 vs. ExPASy TrEMBL
Match: A0A1S3C651 (uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103497344 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 8.1e-57
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NL SDS+KKNRIQVSNTKKPLFFYVNLAKRYMQQH+EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSINLSSDSFKKNRIQVSNTKKPLFFYVNLAKRYMQQHDEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGLAVEK       +IATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL
Sbjct: 61  VVTVAEILKNNGLAVEK-------KIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEERGEIGDADEQ
Sbjct: 121 MAAAAEERGEIGDADEQ 130

[Close]

BLAST of HG10006664 vs. ExPASy TrEMBL
Match: A0A6J1G312 (uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC111450368 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.6e-55
Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGLAVEK       +I TSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL
Sbjct: 61  VVTVAEILKNNGLAVEK-------KITTSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEER E GDADEQ
Sbjct: 121 MAAAAEERAETGDADEQ 130

[Close]

BLAST of HG10006664 vs. ExPASy TrEMBL
Match: A0A6J1CNW3 (uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC111012990 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.8e-55
Identity = 121/137 (88.32%), Postives = 124/137 (90.51%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGVNS+NLG D YKKNRIQVSNTKKPLFFYVNLAKRYMQQH EVELSALGMAIAT
Sbjct: 1   MEEIVEGVNSLNLGPDGYKKNRIQVSNTKKPLFFYVNLAKRYMQQHNEVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGL VEK       +IATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL
Sbjct: 61  VVTVAEILKNNGLVVEK-------KIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEERG+ GD DEQ
Sbjct: 121 MAAAAEERGDTGDTDEQ 130

[Close]

BLAST of HG10006664 vs. ExPASy TrEMBL
Match: A0A6J1KJN4 (uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC111493796 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 7.6e-55
Identity = 122/137 (89.05%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEIVEGV+SMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQH+ VELSALGMAIAT
Sbjct: 1   MEEIVEGVDSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHDVVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNGLAVEK       +I TSTVDIKDDSRGRPVQKAKIEI LGKTENFDEL
Sbjct: 61  VVTVAEILKNNGLAVEK-------KITTSTVDIKDDSRGRPVQKAKIEIFLGKTENFDEL 120

Query: 121 MAAAAEERGEIGDADEQ 138
           MAAAAEER E GDADEQ
Sbjct: 121 MAAAAEERAETGDADEQ 130

[Close]

BLAST of HG10006664 vs. TAIR 10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 189.1 bits (479), Expect = 2.3e-48
Identity = 107/138 (77.54%), Postives = 116/138 (84.06%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEI EGVN+MNL  D+ KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTVAEILKNNG AVEK       +I TSTVDIKDDSRGRPVQKAKIEI L K+E FDEL
Sbjct: 61  VVTVAEILKNNGFAVEK-------KIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDEL 120

Query: 121 MAAAAEERGEIGDADEQH 139
           MAAA EE+ E  +A EQ+
Sbjct: 121 MAAANEEK-EAAEAQEQN 130

[Close]

BLAST of HG10006664 vs. TAIR 10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 184.9 bits (468), Expect = 4.4e-47
Identity = 101/128 (78.91%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 1   MEEIVEGVNSMNLGSDSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIAT 60
           MEEI +GVN+MNL +DS KKNRIQVSNTKKPLFFYVNLAKRYMQQ+ +VELSALGMAIAT
Sbjct: 1   MEEITDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIAT 60

Query: 61  VVTVAEILKNNGLAVEKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDEL 120
           VVTV EILKNNG AVEK       +I TSTVDIKDD+RGRPVQKAKIEI L K+E FDEL
Sbjct: 61  VVTVTEILKNNGFAVEK-------KIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDEL 120

Query: 121 MAAAAEER 129
           MAAA EE+
Sbjct: 121 MAAANEEK 121

[Close]

BLAST of HG10006664 vs. TAIR 10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein )

HSP 1 Score: 143.7 bits (361), Expect = 1.1e-34
Identity = 74/106 (69.81%), Postives = 91/106 (85.85%), Query Frame = 0


Query: 16  DSYKKNRIQVSNTKKPLFFYVNLAKRYMQQHEEVELSALGMAIATVVTVAEILKNNGLAV 75
           +++KKNRIQVSNTKKPLFFYVNLAKRY+QQH EVELSALGMAI TVVT++EILKNNGLA 
Sbjct: 33  ETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLAT 92

Query: 76  EKMTCIKSTEIATSTVDIKDDSRGRPVQKAKIEILLGKTENFDELM 122
           EK       ++ TSTV +KD+++G+ VQKAKIEI+LGK++ FD L+
Sbjct: 93  EK-------KVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131

The following BLAST results are available for this feature:

BLAST of HG10006664 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457716.1	1.7e-56	91.24	PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo] >KAA0061596.1 D...	[more]
XP_004139317.1	1.1e-55	89.78	uncharacterized protein At2g34160 [Cucumis sativus] >KAE8651529.1 hypothetical p...	[more]
XP_038890892.1	3.2e-55	89.29	uncharacterized protein At2g34160-like [Benincasa hispida]	[more]
KAG6599408.1	5.4e-55	89.78	hypothetical protein SDJN03_09186, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022946216.1	5.4e-55	89.78	uncharacterized protein At2g34160-like [Cucurbita moschata] >KAG7030395.1 hypoth...	[more]

BLAST of HG10006664 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22969	6.2e-46	78.91	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of HG10006664 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BH52	8.1e-57	91.24	DNA/RNA-binding protein Alba-like protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C651	8.1e-57	91.24	uncharacterized protein At2g34160-like OS=Cucumis melo OX=3656 GN=LOC103497344 P...	[more]
A0A6J1G312	2.6e-55	89.78	uncharacterized protein At2g34160-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1CNW3	5.8e-55	88.32	uncharacterized protein At2g34160-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1KJN4	7.6e-55	89.05	uncharacterized protein At2g34160-like OS=Cucurbita maxima OX=3661 GN=LOC1114937...	[more]

BLAST of HG10006664 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29250.1	2.3e-48	77.54	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	4.4e-47	78.91	Alba DNA/RNA-binding protein	[more]
AT3G04620.1	1.1e-34	69.81	Alba DNA/RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..138 e-value: 3.4E-57 score: 190.6
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PANTHER	PTHR31947	DNA/RNA-BINDING PROTEIN ALBA 3	coord: 1..137
IPR036882	Alba-like domain superfamily	GENE3D	3.30.110.20		coord: 19..137 e-value: 2.4E-52 score: 177.7
IPR036882	Alba-like domain superfamily	SUPERFAMILY	82704	AlbA-like	coord: 20..122
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 21..74 e-value: 5.5E-13 score: 48.5
None	No IPR available	PANTHER	PTHR31947:SF32	SUBFAMILY NOT NAMED	coord: 1..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006664.1	HG10006664.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding