HG10006650 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006650
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 20724572 .. 20725028 (-)
RNA-Seq Expression	HG10006650
Synteny	HG10006650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGGCTTTGGCAGCTCTCTCAGGAACCGTCATCGTTGTCCTTTCCTTCTGCCTCCATAAATCCCACCCCTCAATTTCCTCTGGTAAGCAATTTTTATCTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAATTCAAAATTTTTATTTGATAATTATTTTTTGGGGTTTTTTTTTCCTTTAGTTGAAGTGGTGAAGAAGAAAGAGATGGAGAAGAAGAAGAAAGGAAGAAAAAGAGTTCATTTTGCTGATGATTTGGCCATTTTTAGTACTGAAGAATTGCAGAGAAAAAAAGGCTTAATTTTGGGACCTTCGCCGCCGAGGGGAAGAGCTCCGGCGCGGCGTTTGACGAGCAACGGTGGAGGAGGAGGCGGAATGCCGGCAAATAGAGTAGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCACAGGATAGCATATTCTCTTTAA

mRNA sequence

ATGGCTATGGCTTTGGCAGCTCTCTCAGGAACCGTCATCGTTGTCCTTTCCTTCTGCCTCCATAAATCCCACCCCTCAATTTCCTCTGTTGAAGTGGTGAAGAAGAAAGAGATGGAGAAGAAGAAGAAAGGAAGAAAAAGAGTTCATTTTGCTGATGATTTGGCCATTTTTAGTACTGAAGAATTGCAGAGAAAAAAAGGCTTAATTTTGGGACCTTCGCCGCCGAGGGGAAGAGCTCCGGCGCGGCGTTTGACGAGCAACGGTGGAGGAGGAGGCGGAATGCCGGCAAATAGAGTAGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCACAGGATAGCATATTCTCTTTAA

Coding sequence (CDS)

ATGGCTATGGCTTTGGCAGCTCTCTCAGGAACCGTCATCGTTGTCCTTTCCTTCTGCCTCCATAAATCCCACCCCTCAATTTCCTCTGTTGAAGTGGTGAAGAAGAAAGAGATGGAGAAGAAGAAGAAAGGAAGAAAAAGAGTTCATTTTGCTGATGATTTGGCCATTTTTAGTACTGAAGAATTGCAGAGAAAAAAAGGCTTAATTTTGGGACCTTCGCCGCCGAGGGGAAGAGCTCCGGCGCGGCGTTTGACGAGCAACGGTGGAGGAGGAGGCGGAATGCCGGCAAATAGAGTAGCGCTGTACAATGGAATCTTAAGGGATCGTTTGGTTCACAGGATAGCATATTCTCTTTAA

Protein sequence

MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL

Homology

[Close]

BLAST of HG10006650 vs. NCBI nr
Match: XP_038890799.1 (uncharacterized protein LOC120080255 [Benincasa hispida])

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 107/118 (90.68%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTE 60
           MAMA AALSGTVIV+LSFCLHKS PSISS  VVKKKEMEKKKKGRKRVHFADDLAIF TE
Sbjct: 11  MAMAFAALSGTVIVILSFCLHKSDPSISS--VVKKKEMEKKKKGRKRVHFADDLAIFGTE 70

Query: 61  ELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL 119
           ELQ KKGLILG SPP GR PARRLTS GGGGGGMPANRVALYNGILRDRLVHRIAYSL
Sbjct: 71  ELQIKKGLILGSSPPPGRGPARRLTSTGGGGGGMPANRVALYNGILRDRLVHRIAYSL 126

[Close]

BLAST of HG10006650 vs. NCBI nr
Match: XP_008457539.1 (PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 2.5e-40
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-S 60
           MAMA AALS GTVIVVLS  LHKSHPSISS  VV+KKEMEKKKKGRKRVHF+DDLAIF S
Sbjct: 12  MAMAFAALSAGTVIVVLSLYLHKSHPSISS--VVEKKEMEKKKKGRKRVHFSDDLAIFSS 71

Query: 61  TEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL 119
           TEEL+RKK +ILG SP  GRA ARRLT NGGGGGGMPANR ALYNGILRDRLVHRIAYSL
Sbjct: 72  TEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLVHRIAYSL 129

[Close]

BLAST of HG10006650 vs. NCBI nr
Match: KGN60682.1 (hypothetical protein Csa_019276 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.0e-37
Identity = 93/119 (78.15%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-ST 60
           MAMA A   GTVIVVLSF LHKSHPSISS  V+KKKE EKKKKGRK+VHF+DDLAIF ST
Sbjct: 11  MAMAFA---GTVIVVLSFYLHKSHPSISS--VMKKKEKEKKKKGRKKVHFSDDLAIFSST 70

Query: 61  EELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL 119
           ++L+RKK ++LG SPP GRAPAR LT++GGGGGG+PANR ALYNGILR+RLVHRIAYSL
Sbjct: 71  KDLKRKKDMMLGSSPPSGRAPARPLTTSGGGGGGLPANRAALYNGILRNRLVHRIAYSL 124

[Close]

BLAST of HG10006650 vs. NCBI nr
Match: XP_022946911.1 (uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata])

HSP 1 Score: 157.5 bits (397), Expect = 6.9e-35
Identity = 89/118 (75.42%), Postives = 96/118 (81.36%), Query Frame = 0


Query: 1   MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTE 60
           MAMA+AALSG V VVLSF   KS  S+SSV       ++KKKKGRKRVHFADD A+ STE
Sbjct: 1   MAMAMAALSGAVAVVLSFRHRKSAASVSSV-------VKKKKKGRKRVHFADDSAVCSTE 60

Query: 61  ELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL 119
           ELQRK GLILGPSPP GRAP   LTS+GGGG GMPANRVALYNGILRDRLVHR+AYSL
Sbjct: 61  ELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 111

[Close]

BLAST of HG10006650 vs. NCBI nr
Match: XP_022946910.1 (uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata])

HSP 1 Score: 153.7 bits (387), Expect = 1.0e-33
Identity = 90/122 (73.77%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKE----MEKKKKGRKRVHFADDLAI 60
           MAMA+AALSG V VVLSF   KS  S+SS    K+K     ++KKKKGRKRVHFADD A+
Sbjct: 1   MAMAMAALSGAVAVVLSFRHRKSAASVSS---GKQKPPIFLVKKKKKGRKRVHFADDSAV 60

Query: 61  FSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAY 119
            STEELQRK GLILGPSPP GRAP   LTS+GGGG GMPANRVALYNGILRDRLVHR+AY
Sbjct: 61  CSTEELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAY 119

[Close]

BLAST of HG10006650 vs. ExPASy TrEMBL
Match: A0A1S3C5Q6 (uncharacterized protein LOC103497202 OS=Cucumis melo OX=3656 GN=LOC103497202 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.2e-40
Identity = 102/120 (85.00%), Postives = 106/120 (88.33%), Query Frame = 0


Query: 1   MAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-S 60
           MAMA AALS GTVIVVLS  LHKSHPSISS  VV+KKEMEKKKKGRKRVHF+DDLAIF S
Sbjct: 12  MAMAFAALSAGTVIVVLSLYLHKSHPSISS--VVEKKEMEKKKKGRKRVHFSDDLAIFSS 71

Query: 61  TEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL 119
           TEEL+RKK +ILG SP  GRA ARRLT NGGGGGGMPANR ALYNGILRDRLVHRIAYSL
Sbjct: 72  TEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLVHRIAYSL 129

[Close]

BLAST of HG10006650 vs. ExPASy TrEMBL
Match: A0A0A0LIY8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006280 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.5e-38
Identity = 93/119 (78.15%), Postives = 105/119 (88.24%), Query Frame = 0


Query: 1   MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-ST 60
           MAMA A   GTVIVVLSF LHKSHPSISS  V+KKKE EKKKKGRK+VHF+DDLAIF ST
Sbjct: 11  MAMAFA---GTVIVVLSFYLHKSHPSISS--VMKKKEKEKKKKGRKKVHFSDDLAIFSST 70

Query: 61  EELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL 119
           ++L+RKK ++LG SPP GRAPAR LT++GGGGGG+PANR ALYNGILR+RLVHRIAYSL
Sbjct: 71  KDLKRKKDMMLGSSPPSGRAPARPLTTSGGGGGGLPANRAALYNGILRNRLVHRIAYSL 124

[Close]

BLAST of HG10006650 vs. ExPASy TrEMBL
Match: A0A6J1G4X1 (uncharacterized protein LOC111450851 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450851 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.4e-35
Identity = 89/118 (75.42%), Postives = 96/118 (81.36%), Query Frame = 0


Query: 1   MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIFSTE 60
           MAMA+AALSG V VVLSF   KS  S+SSV       ++KKKKGRKRVHFADD A+ STE
Sbjct: 1   MAMAMAALSGAVAVVLSFRHRKSAASVSSV-------VKKKKKGRKRVHFADDSAVCSTE 60

Query: 61  ELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL 119
           ELQRK GLILGPSPP GRAP   LTS+GGGG GMPANRVALYNGILRDRLVHR+AYSL
Sbjct: 61  ELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAYSL 111

[Close]

BLAST of HG10006650 vs. ExPASy TrEMBL
Match: A0A6J1G5C3 (uncharacterized protein LOC111450851 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450851 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.9e-34
Identity = 90/122 (73.77%), Postives = 98/122 (80.33%), Query Frame = 0


Query: 1   MAMALAALSGTVIVVLSFCLHKSHPSISSVEVVKKKE----MEKKKKGRKRVHFADDLAI 60
           MAMA+AALSG V VVLSF   KS  S+SS    K+K     ++KKKKGRKRVHFADD A+
Sbjct: 1   MAMAMAALSGAVAVVLSFRHRKSAASVSS---GKQKPPIFLVKKKKKGRKRVHFADDSAV 60

Query: 61  FSTEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAY 119
            STEELQRK GLILGPSPP GRAP   LTS+GGGG GMPANRVALYNGILRDRLVHR+AY
Sbjct: 61  CSTEELQRKNGLILGPSPPVGRAPPPSLTSHGGGGSGMPANRVALYNGILRDRLVHRMAY 119

[Close]

BLAST of HG10006650 vs. ExPASy TrEMBL
Match: A0A5A7V7G5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00290 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.7e-26
Identity = 81/120 (67.50%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1   MAMALAALS-GTVIVVLSFCLHKSHPSISSVEVVKKKEMEKKKKGRKRVHFADDLAIF-S 60
           MAMA AALS GTVIVVLS  LHKSHPSISS                         AIF S
Sbjct: 12  MAMAFAALSAGTVIVVLSLYLHKSHPSISS-------------------------AIFSS 71

Query: 61  TEELQRKKGLILGPSPPRGRAPARRLTSNGGGGGGMPANRVALYNGILRDRLVHRIAYSL 119
           TEEL+RKK +ILG SP  GRA ARRLT NGGGGGGMPANR ALYNGILRDRLVHRIAYSL
Sbjct: 72  TEELKRKKDMILGSSPSPGRAAARRLTRNGGGGGGMPANRAALYNGILRDRLVHRIAYSL 106

The following BLAST results are available for this feature:

BLAST of HG10006650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890799.1	1.3e-46	90.68	uncharacterized protein LOC120080255 [Benincasa hispida]	[more]
XP_008457539.1	2.5e-40	85.00	PREDICTED: uncharacterized protein LOC103497202 [Cucumis melo]	[more]
KGN60682.1	2.0e-37	78.15	hypothetical protein Csa_019276 [Cucumis sativus]	[more]
XP_022946911.1	6.9e-35	75.42	uncharacterized protein LOC111450851 isoform X2 [Cucurbita moschata]	[more]
XP_022946910.1	1.0e-33	73.77	uncharacterized protein LOC111450851 isoform X1 [Cucurbita moschata]	[more]

BLAST of HG10006650 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5Q6	1.2e-40	85.00	uncharacterized protein LOC103497202 OS=Cucumis melo OX=3656 GN=LOC103497202 PE=...	[more]
A0A0A0LIY8	9.5e-38	78.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006280 PE=4 SV=1	[more]
A0A6J1G4X1	3.4e-35	75.42	uncharacterized protein LOC111450851 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1G5C3	4.9e-34	73.77	uncharacterized protein LOC111450851 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7V7G5	3.7e-26	67.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10006650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..95
None	No IPR available	PANTHER	PTHR33564:SF11	OS06G0604600 PROTEIN	coord: 2..117
None	No IPR available	PANTHER	PTHR33564	TRANSMEMBRANE PROTEIN	coord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006650.1	HG10006650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane