HG10006549 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006549
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	VQ domain-containing protein
Location	Chr07: 19749841 .. 19750227 (+)
RNA-Seq Expression	HG10006549
Synteny	HG10006549

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGTGTGGAGAGAATCCATACAACAACCAAAGCCAAAACCCTACAAAAGTTCAAAGGAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGACACTCCGACTCGCCGGAGGAACCATAAATCGCCTTCCAACGGTGCCCGAACTCCATCTTCAACGTTTCATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCTGATGACATGGCGTCGCTCCTCCAATTTGACGATCAAGGTTGTTTTGCAACACACAATAATAATATTCTTCCCAACAATGACATTATGGGATTTCAATCTTCTTATTTTTTTCAATAG

mRNA sequence

ATGGGGAAGTGTGGAGAGAATCCATACAACAACCAAAGCCAAAACCCTACAAAAGTTCAAAGGAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGACACTCCGACTCGCCGGAGGAACCATAAATCGCCTTCCAACGGTGCCCGAACTCCATCTTCAACGTTTCATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCTGATGACATGGCGTCGCTCCTCCAATTTGACGATCAAGGTTGTTTTGCAACACACAATAATAATATTCTTCCCAACAATGACATTATGGGATTTCAATCTTCTTATTTTTTTCAATAG

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATCCATACAACAACCAAAGCCAAAACCCTACAAAAGTTCAAAGGAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCGACTCCGACACTCCGACTCGCCGGAGGAACCATAAATCGCCTTCCAACGGTGCCCGAACTCCATCTTCAACGTTTCATGCAGATCATGAAATGGAAGTTTTGAAGTTCTCTGATGACATGGCGTCGCTCCTCCAATTTGACGATCAAGGTTGTTTTGCAACACACAATAATAATATTCTTCCCAACAATGACATTATGGGATTTCAATCTTCTTATTTTTTTCAATAG

Protein sequence

MGKCGENPYNNQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSDDMASLLQFDDQGCFATHNNNILPNNDIMGFQSSYFFQ

Homology

[Close]

BLAST of HG10006549 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 4.7e-45
Identity = 110/140 (78.57%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MGKCGENPYNN--------QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGEN Y N        Q+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSDD--MASLLQFDDQGCFAT-H 120
           FDS+TPTRRRN K  S+ ARTPS+ FHAD HEMEVLKFSDD  M SLLQFD QGCF T +
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 NNNILPNNDIMGFQSSYFFQ 129
           NNNILPNN IM FQSS FFQ
Sbjct: 121 NNNILPNN-IMEFQSSCFFQ 139

[Close]

BLAST of HG10006549 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 167.5 bits (423), Expect = 7.3e-38
Identity = 92/131 (70.23%), Postives = 106/131 (80.92%), Query Frame = 0


Query: 1   MGKCGENPYNN--QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTP 60
           MGKCGEN + +  QSQNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTGF S +P
Sbjct: 1   MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSP 60

Query: 61  TRRRNHKSPSNGARTPS-STFHADHEMEVLKFSDDMASLLQFDDQGCFATHNNNILPNND 120
           TRR NHK P + A+TPS ST HA+ +ME LK SD+M+SLL+FDD+ CF T  +N+L NN 
Sbjct: 61  TRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVT-LDNVLTNN- 120

Query: 121 IMGFQSSYFFQ 129
            MGFQ+S  FQ
Sbjct: 121 FMGFQASCLFQ 129

[Close]

BLAST of HG10006549 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 2.5e-22
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 33  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSD 92
           MMIKAS+ALEFRAIVQQLTGFDS+ TPTRRRN KS S+ ARTPSS FHAD EMEVLKFSD
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 60

Query: 93  D-MASLLQFDDQGC 105
           D MASLLQFDDQGC
Sbjct: 61  DHMASLLQFDDQGC 74

[Close]

BLAST of HG10006549 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 77.4 bits (189), Expect = 9.9e-11
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 0


Query: 11  NQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNG 70
           ++S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +SD         +    
Sbjct: 29  HKSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVGEPSNVPTTLPEE 88

Query: 71  ARTPSSTFHAD------HEMEVL-KFSDDMASLLQFDDQGCFATHNNNILPNNDIMGFQS 128
           A    S FH D       +  +L  F DDM+S L+FD+   +       +P N + GFQS
Sbjct: 89  ANQVHSPFHVDSPPAKVDDKSLLDTFQDDMSS-LEFDEGFLW-----RAVPEN-LFGFQS 145

[Close]

BLAST of HG10006549 vs. NCBI nr
Match: OMO71983.1 (VQ motif-containing protein [Corchorus capsularis])

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-09
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 0


Query: 12  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGA 71
           +S+NPTKV++ PIKV YI SP M+K SNA EFRAIVQ+LTG +SDT  +  N    +   
Sbjct: 16  KSKNPTKVKKNPIKVTYIDSPTMVKVSNADEFRAIVQELTGRNSDTREQHSNDVHTTTIP 75

Query: 72  RTPSSTFH-----ADHEMEVLKFSDDMASLLQFDDQGCFATHNNNILPNNDIMGFQSS 125
           +  ++  H      D  + +  F  DM+S L+FD+   +           D++GFQSS
Sbjct: 76  KEEANQVHDSSAKVDDRILLDSFPVDMSS-LEFDEDFTWRG------VQEDLLGFQSS 126

[Close]

BLAST of HG10006549 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.3e-45
Identity = 110/140 (78.57%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MGKCGENPYNN--------QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGEN Y N        Q+QNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSDTPTRRRNHKSPSNGARTPSSTFHAD-HEMEVLKFSDD--MASLLQFDDQGCFAT-H 120
           FDS+TPTRRRN K  S+ ARTPS+ FHAD HEMEVLKFSDD  M SLLQFD QGCF T +
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 NNNILPNNDIMGFQSSYFFQ 129
           NNNILPNN IM FQSS FFQ
Sbjct: 121 NNNILPNN-IMEFQSSCFFQ 139

[Close]

BLAST of HG10006549 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.2e-22
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 0


Query: 33  MMIKASNALEFRAIVQQLTGFDSD-TPTRRRNHKSPSNGARTPSSTFHADHEMEVLKFSD 92
           MMIKAS+ALEFRAIVQQLTGFDS+ TPTRRRN KS S+ ARTPSS FHAD EMEVLKFSD
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADREMEVLKFSD 60

Query: 93  D-MASLLQFDDQGC 105
           D MASLLQFDDQGC
Sbjct: 61  DHMASLLQFDDQGC 74

[Close]

BLAST of HG10006549 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.8e-11
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 0


Query: 11  NQSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNG 70
           ++S+NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +SD         +    
Sbjct: 29  HKSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVGEPSNVPTTLPEE 88

Query: 71  ARTPSSTFHAD------HEMEVL-KFSDDMASLLQFDDQGCFATHNNNILPNNDIMGFQS 128
           A    S FH D       +  +L  F DDM+S L+FD+   +       +P N + GFQS
Sbjct: 89  ANQVHSPFHVDSPPAKVDDKSLLDTFQDDMSS-LEFDEGFLW-----RAVPEN-LFGFQS 145

[Close]

BLAST of HG10006549 vs. ExPASy TrEMBL
Match: A0A1R3HNT0 (VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18001 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.0e-09
Identity = 48/118 (40.68%), Postives = 68/118 (57.63%), Query Frame = 0


Query: 12  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGA 71
           +S+NPTKV++ PIKV YI SP M+K SNA EFRAIVQ+LTG +SDT  +  N    +   
Sbjct: 16  KSKNPTKVKKNPIKVTYIDSPTMVKVSNADEFRAIVQELTGRNSDTREQHSNDVHTTTIP 75

Query: 72  RTPSSTFH-----ADHEMEVLKFSDDMASLLQFDDQGCFATHNNNILPNNDIMGFQSS 125
           +  ++  H      D  + +  F  DM+S L+FD+   +           D++GFQSS
Sbjct: 76  KEEANQVHDSSAKVDDRILLDSFPVDMSS-LEFDEDFTWRG------VQEDLLGFQSS 126

[Close]

BLAST of HG10006549 vs. ExPASy TrEMBL
Match: A0A1R3JNE3 (VQ motif-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_15410 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 6.5e-08
Identity = 47/124 (37.90%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 12  QSQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSDTPTRRRNHKSPSNGA 71
           +S+NP KV++ PIKV YI+SP M+K SNA EFRAIVQ+LTG +SDT  +  N    +   
Sbjct: 17  KSKNPIKVKKNPIKVTYIASPTMVKVSNADEFRAIVQELTGRNSDTREQHSNDVHTTTIP 76

Query: 72  RTPSSTFH-----------ADHEMEVLKFSDDMASLLQFDDQGCFATHNNNILPNNDIMG 125
           +  ++  H            D  + +  F  DM+S L+FD+   +           D+ G
Sbjct: 77  KEDANQVHDFHFQVDSSAKVDDRIMLDTFPVDMSS-LEFDEDFTWRG------VQEDLFG 133

The following BLAST results are available for this feature:

BLAST of HG10006549 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60779.1	4.7e-45	78.57	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
KAG6599333.1	7.3e-38	70.23	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0063578.1	2.5e-22	86.49	hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]	[more]
XP_021282108.1	9.9e-11	43.55	uncharacterized protein LOC110414990 [Herrania umbratica]	[more]
OMO71983.1	4.2e-09	40.68	VQ motif-containing protein [Corchorus capsularis]	[more]

BLAST of HG10006549 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006549 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	2.3e-45	78.57	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A5A7V7M1	1.2e-22	86.49	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1A533	4.8e-11	43.55	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A1R3HNT0	2.0e-09	40.68	VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18001 P...	[more]
A0A1R3JNE3	6.5e-08	37.90	VQ motif-containing protein OS=Corchorus olitorius OX=93759 GN=COLO4_15410 PE=4 ...	[more]

BLAST of HG10006549 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 29..56 e-value: 8.2E-9 score: 34.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 10..113
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 10..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006549.1	HG10006549.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity