HG10006542 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006542
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	flowering locus K homology domain
Location	Chr07: 19657903 .. 19658475 (+)
RNA-Seq Expression	HG10006542
Synteny	HG10006542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCATTGGTCATGACGTTAAATATAATTTGAGGGACTTGGACATTTTTCAATTCAAGGACCCAAGACAAAAATTAAAAATTCAAAACATTGTTACACTTTTTAAAGTTTGGGACAAAATAGTGAGTTCGTAATTTTACCAAAAAAAAAAAAGAAAGAAAAAGAAAACATTCTGTACGAACAAAAGGTCGGGTGGCTCTAACAGTTGACATTGTATAATTCCTTCTTTTCAATTATTCTTTTTGGAGATAATTCACGTCTATAAGTTTTCTGATGTGGTGGTGTCCTTTTTAGACCTGATTAATTTTGATTGGAAGGCAACATTACTAGTCTGGTCTTCGTCTTTGGTGCAATGTACAGCCTTTAAATATCCTTATTTAATTGTGTTGCAGAATTTTATGGCCGGTGCTGGAGCTCCAGCCCAACCTCAAGCTGGGGTTTCGACAGACCAAAGCTACAACTCATATGCTGCTCATGGTTCAGTTTACGCGTCTCCCCCTGCAAACCCAGCAGCTCATGCTGGTCATGCTGGAGGCTATGGCTCTGTTTACGGTACGAATTATGGGTACTAA

mRNA sequence

ATGCCCATTGGTCATGACGTTAAATATAATTTGAGGGACTTGGACATTTTTCAATTCAAGGACCCAAGACAAAAATTAAAAATTCAAAACATTGTTACACTTTTTAAAGTTTGGGACAAAATAAATTTTATGGCCGGTGCTGGAGCTCCAGCCCAACCTCAAGCTGGGGTTTCGACAGACCAAAGCTACAACTCATATGCTGCTCATGGTTCAGTTTACGCGTCTCCCCCTGCAAACCCAGCAGCTCATGCTGGTCATGCTGGAGGCTATGGCTCTGTTTACGGTACGAATTATGGGTACTAA

Coding sequence (CDS)

ATGCCCATTGGTCATGACGTTAAATATAATTTGAGGGACTTGGACATTTTTCAATTCAAGGACCCAAGACAAAAATTAAAAATTCAAAACATTGTTACACTTTTTAAAGTTTGGGACAAAATAAATTTTATGGCCGGTGCTGGAGCTCCAGCCCAACCTCAAGCTGGGGTTTCGACAGACCAAAGCTACAACTCATATGCTGCTCATGGTTCAGTTTACGCGTCTCCCCCTGCAAACCCAGCAGCTCATGCTGGTCATGCTGGAGGCTATGGCTCTGTTTACGGTACGAATTATGGGTACTAA

Protein sequence

MPIGHDVKYNLRDLDIFQFKDPRQKLKIQNIVTLFKVWDKINFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY

Homology

[Close]

BLAST of HG10006542 vs. NCBI nr
Match: XP_038877255.1 (flowering locus K homology domain isoform X1 [Benincasa hispida] >XP_038877256.1 flowering locus K homology domain isoform X1 [Benincasa hispida] >XP_038877257.1 flowering locus K homology domain isoform X1 [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQPQ GVSTDQ YNSYAAHGSVYASPPANPAAHAGHAGGYG+VYGTNYGY
Sbjct: 428 NFMAGAGAPAQPQTGVSTDQGYNSYAAHGSVYASPPANPAAHAGHAGGYGNVYGTNYGY 486

[Close]

BLAST of HG10006542 vs. NCBI nr
Match: XP_038877258.1 (flowering locus K homology domain isoform X2 [Benincasa hispida])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQPQ GVSTDQ YNSYAAHGSVYASPPANPAAHAGHAGGYG+VYGTNYGY
Sbjct: 427 NFMAGAGAPAQPQTGVSTDQGYNSYAAHGSVYASPPANPAAHAGHAGGYGNVYGTNYGY 485

[Close]

BLAST of HG10006542 vs. NCBI nr
Match: XP_022143057.1 (flowering locus K homology domain [Momordica charantia] >XP_022143058.1 flowering locus K homology domain [Momordica charantia])

HSP 1 Score: 108.6 bits (270), Expect = 3.1e-20
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSY-AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQ QAG +TDQ YNSY AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
Sbjct: 423 NFMAGAGAPAQAQAGATTDQGYNSYAAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 482

[Close]

BLAST of HG10006542 vs. NCBI nr
Match: XP_008456234.1 (PREDICTED: flowering locus K homology domain isoform X2 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 5.3e-20
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Sbjct: 427 NFMAGAGAPAQPQAGVSTDQGYNSYAAHGSVYASPPANPAA---HAGGYGSVYGTNYGY 482

[Close]

BLAST of HG10006542 vs. NCBI nr
Match: XP_011648742.1 (flowering locus K homology domain isoform X2 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 5.3e-20
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Sbjct: 427 NFMAGAGAPAQPQAGVSTDQGYNSYAAHGSVYASPPANPAA---HAGGYGSVYGTNYGY 482

[Close]

BLAST of HG10006542 vs. ExPASy Swiss-Prot
Match: Q9SR13 (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-07
Identity = 33/61 (54.10%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 42  NFM--AGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYG 101
           NFM  AGA APAQPQ      Q YN YA HGSVYA+ P NP       GGY + Y + YG
Sbjct: 523 NFMAEAGAPAPAQPQTVAPEQQGYNPYATHGSVYAAAPTNP------PGGYATDYSSGYG 577

[Close]

BLAST of HG10006542 vs. ExPASy TrEMBL
Match: A0A6J1CPP3 (flowering locus K homology domain OS=Momordica charantia OX=3673 GN=LOC111013036 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.5e-20
Identity = 55/60 (91.67%), Postives = 56/60 (93.33%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSY-AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQ QAG +TDQ YNSY AAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY
Sbjct: 423 NFMAGAGAPAQAQAGATTDQGYNSYAAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 482

[Close]

BLAST of HG10006542 vs. ExPASy TrEMBL
Match: A0A5D3D4G7 (Flowering locus K-like proteiny domain isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001640 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-20
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Sbjct: 428 NFMAGAGAPAQPQAGVSTDQGYNSYAAHGSVYASPPANPAA---HAGGYGSVYGTNYGY 483

[Close]

BLAST of HG10006542 vs. ExPASy TrEMBL
Match: A0A0A0LJ91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010230 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-20
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Sbjct: 454 NFMAGAGAPAQPQAGVSTDQGYNSYAAHGSVYASPPANPAA---HAGGYGSVYGTNYGY 509

[Close]

BLAST of HG10006542 vs. ExPASy TrEMBL
Match: A0A1S3C3F3 (flowering locus K homology domain isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496231 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-20
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Sbjct: 427 NFMAGAGAPAQPQAGVSTDQGYNSYAAHGSVYASPPANPAA---HAGGYGSVYGTNYGY 482

[Close]

BLAST of HG10006542 vs. ExPASy TrEMBL
Match: A0A1S3C2U6 (flowering locus K homology domain isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496231 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.6e-20
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 42  NFMAGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYGY 101
           NFMAGAGAPAQPQAGVSTDQ YNSYAAHGSVYASPPANPAA   HAGGYGSVYGTNYGY
Sbjct: 428 NFMAGAGAPAQPQAGVSTDQGYNSYAAHGSVYASPPANPAA---HAGGYGSVYGTNYGY 483

[Close]

BLAST of HG10006542 vs. TAIR 10
Match: AT3G04610.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 33/61 (54.10%), Postives = 36/61 (59.02%), Query Frame = 0


Query: 42  NFM--AGAGAPAQPQAGVSTDQSYNSYAAHGSVYASPPANPAAHAGHAGGYGSVYGTNYG 101
           NFM  AGA APAQPQ      Q YN YA HGSVYA+ P NP       GGY + Y + YG
Sbjct: 523 NFMAEAGAPAPAQPQTVAPEQQGYNPYATHGSVYAAAPTNP------PGGYATDYSSGYG 577

The following BLAST results are available for this feature:

BLAST of HG10006542 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877255.1	1.5e-22	94.92	flowering locus K homology domain isoform X1 [Benincasa hispida] >XP_038877256.1...	[more]
XP_038877258.1	1.5e-22	94.92	flowering locus K homology domain isoform X2 [Benincasa hispida]	[more]
XP_022143057.1	3.1e-20	91.67	flowering locus K homology domain [Momordica charantia] >XP_022143058.1 flowerin...	[more]
XP_008456234.1	5.3e-20	93.22	PREDICTED: flowering locus K homology domain isoform X2 [Cucumis melo]	[more]
XP_011648742.1	5.3e-20	93.22	flowering locus K homology domain isoform X2 [Cucumis sativus]	[more]

BLAST of HG10006542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR13	2.4e-07	54.10	Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV...	[more]

BLAST of HG10006542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPP3	1.5e-20	91.67	flowering locus K homology domain OS=Momordica charantia OX=3673 GN=LOC111013036...	[more]
A0A5D3D4G7	2.6e-20	93.22	Flowering locus K-like proteiny domain isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A0A0LJ91	2.6e-20	93.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010230 PE=4 SV=1	[more]
A0A1S3C3F3	2.6e-20	93.22	flowering locus K homology domain isoform X2 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A1S3C2U6	2.6e-20	93.22	flowering locus K homology domain isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]

BLAST of HG10006542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04610.1	1.7e-08	54.10	RNA-binding KH domain-containing protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006542.1	HG10006542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding