HG10006531 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006531
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	PSII 6.1 kDa protein
Location	Chr07: 19582995 .. 19584013 (-)
RNA-Seq Expression	HG10006531
Synteny	HG10006531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACTCTGCTTTCTCACTCCAGGCTTCTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAGCAATGGCAGCTCACAGTAAGTTTCTTCAATTCCAAACAGCTTTTTCACTACTTTTTATTACCCAATTACAGAAAAAGCTTCAACTTTCTTTCTCTTCATTTGAAGAACTGAACTGGGTTTTGACTCAATGTTCTGTTTTTATAGTTTAATTATCATTTTGGTTAAATTGAATCTGGTTGTAAAAATAGCATTATAGTTCCTATAATTCAGTTATTACAGCTTTTCCAGATGTCCATGTTGTTTAGTTTCTCATCAGTTGACATGTTTTGATTAGATATGGTAAGAATAGGTTATAAATTTAGATTTGATGAAGAATATATGTGAAAGGTTAAATTGGGTTGACTTTTGTTCATCCTGCCTTTTCCCTTTTCCCTTTTGTTAACCGCTCCTCGATCGGGACCGAGGTTTAGGTCACGAAGGCCATTAAGTTTGGATCCATGTAAATAAATAGAGAACATCATATTCATTATCGAATAAGGAGGAAATAGGTAAGAGTGAGTCCGGTACACATTTTTGTCCGAACATAGCTCAACTGGTTTAGGCATATCTTTTCAACTGATTTAACGAATCCGTTAGTTGATAAGTTGAGTTTATTATGGGAAAGAAAACTGAAACGGGAGTATTTTTTTCAGGGTTGCCTATGTTGCAAAAGATGAAGAAGGGAGGGATAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCAGGCACGGTGGTGGCGGTGGCGATGGCTGCATTGGCGGCAGCAGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTATATTTTATCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTCTGA

mRNA sequence

ATGGCTTCCACTCTGCTTTCTCACTCCAGGCTTCTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAGCAATGGCAGCTCACAGGTTGCCTATGTTGCAAAAGATGAAGAAGGGAGGGATAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCAGGCACGGTGGTGGCGGTGGCGATGGCTGCATTGGCGGCAGCAGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTATATTTTATCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTCTGA

Coding sequence (CDS)

ATGGCTTCCACTCTGCTTTCTCACTCCAGGCTTCTACTCAAAGGATCATCCAAGGTTCTTCCATCCCCAGCAATGGCAGCTCACAGGTTGCCTATGTTGCAAAAGATGAAGAAGGGAGGGATAAAGTGTAGGGTGGAAGAGAAGGCAGAAGGAAAGAAGTCAGAAGAAAGCATGGTTTCAGGCACGGTGGTGGCGGTGGCGATGGCTGCATTGGCGGCAGCAGGACCCGCGGTGGCGCTGGTGGATGAGAGGTTGAGCACAGAAGGAACAGGGCTGCCTTTTGGTTTAAGCAACAACCTTCTTGGGTGGATTCTGGCTGGGGTGTTTGGTTTAATTTGGGCTCTATATTTTATCTATGCTTCATCCTTGGATGAGGATGAAGATTCTGGTTTGTCACTCTGA

Protein sequence

MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL

Homology

[Close]

BLAST of HG10006531 vs. NCBI nr
Match: XP_038890119.1 (photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 235.7 bits (600), Expect = 2.3e-58
Identity = 125/133 (93.98%), Postives = 129/133 (96.99%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVS 60
           MASTLLSHSRLLLKGSSKVLPSP +AAHRLPMLQKMKKGGIKCRVEEK EGKKSEES+VS
Sbjct: 1   MASTLLSHSRLLLKGSSKVLPSPPVAAHRLPMLQKMKKGGIKCRVEEKPEGKKSEESLVS 60

Query: 61  GTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYA 120
           GT+ AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVF LIWALYF+YA
Sbjct: 61  GTMAAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFALIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of HG10006531 vs. NCBI nr
Match: XP_008456049.1 (PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 1.7e-53
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVS 60
           MASTLL HSRLLLKGSSK+LPS  MAA RLP LQKMK G IKC+VEEK EGKKSEESMV 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYA 120
           GTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILAG+FGLIWALYF+YA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of HG10006531 vs. NCBI nr
Match: XP_004139238.1 (photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60797.1 hypothetical protein Csa_019406 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 4.9e-53
Identity = 121/134 (90.30%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMV 60
           MASTLL HSRLLLKGSSK+L SP MAAHRLP LQKMKKGGIKC VEEK EGKK SEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  SGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIY 120
            GTV AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILA VF LIWALYF+Y
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 134
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of HG10006531 vs. NCBI nr
Match: XP_023521133.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023537055.1 photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.8 bits (530), Expect = 3.0e-50
Identity = 108/133 (81.20%), Postives = 120/133 (90.23%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVS 60
           MASTLLSHS + LKGS K+LP P MAAHRL ++QKMKKGGIKCR+EEK EGK+S+ESM+S
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLSVVQKMKKGGIKCRLEEKQEGKRSKESMIS 60

Query: 61  GTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYA 120
           GTV AVA   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+FG IWALYF+YA
Sbjct: 61  GTVAAVATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of HG10006531 vs. NCBI nr
Match: XP_022937622.1 (photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata] >KAG6586311.1 Photosystem II reaction center W protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021160.1 Photosystem II reaction center W protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.4 bits (529), Expect = 3.9e-50
Identity = 106/133 (79.70%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVS 60
           MASTLLSHS + LKGS K+LP P MAAHRLP++QKMKKGGIKC++EEK EGK+S+ES++S
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYA 120
           GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+FG IWALYF+YA
Sbjct: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of HG10006531 vs. ExPASy Swiss-Prot
Match: Q39194 (Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBW PE=1 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 2.0e-25
Identity = 72/134 (53.73%), Postives = 92/134 (68.66%), Query Frame = 0


Query: 2   ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSG 61
           AST+ +    LL   +  + +P +    LP + K KKGG++C +E     K+   S++  
Sbjct: 8   ASTVSAARPALLLKPTVAISAPVLG---LPPMGK-KKGGVRCSMET----KQGNVSVMGA 67

Query: 62  TVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIY 121
            V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIW  +F+Y
Sbjct: 68  GVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 127

Query: 122 ASSLDEDEDSGLSL 134
            SSL+EDE+SGLSL
Sbjct: 128 TSSLEEDEESGLSL 133

[Close]

BLAST of HG10006531 vs. ExPASy Swiss-Prot
Match: Q41387 (Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=3562 GN=psbW PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.5e-24
Identity = 67/135 (49.63%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK--SEESM 60
           +A   L H+  +   SS +L  P+M           K+  + C +E K    +  +  + 
Sbjct: 13  VARASLVHNSRVGVSSSPILGLPSMT----------KRSKVTCSIENKPSTTETTTTTNK 72

Query: 61  VSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFI 120
             G  +  A AA   + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIWALYF+
Sbjct: 73  SMGASLLAAAAAATISNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFV 132

Query: 121 YASSLDEDEDSGLSL 134
           YAS L+EDE+SGLSL
Sbjct: 133 YASGLEEDEESGLSL 137

[Close]

BLAST of HG10006531 vs. ExPASy Swiss-Prot
Match: Q5ZBY9 (Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PSBW PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-19
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 30  LPMLQKMKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEG 89
           LP ++  +   ++C   ++A    +       +++A+A    A A PA+ALVDER+STEG
Sbjct: 24  LPQMRARRSERVRCNYSKEAATPAAAVKGAGASLLAMA----ATAAPAMALVDERMSTEG 83

Query: 90  TGLPFGLSNNLLGWILAGVFGLIWALYFIYASSLDEDEDSG 131
           TGL  GLSNNLLGWIL GVFGLIW+LY IY S L+EDE+SG
Sbjct: 84  TGLSLGLSNNLLGWILLGVFGLIWSLYTIYTSDLEEDEESG 120

[Close]

BLAST of HG10006531 vs. ExPASy Swiss-Prot
Match: Q9SPI9 (Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=psbW PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 36  MKKGGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFG 95
           + + G +  V    +       +     +   + A  AA PA ALVDER++ +GTG PFG
Sbjct: 16  VSRSGARSAVTVVCKATTVRSEVAKKVAMLSTLPATLAAHPAFALVDERMNGDGTGRPFG 75

Query: 96  LSNNLLGWILAGVFGLIWALYFIYASSLD--EDEDSGLSL 134
           +++ +LGW+L GVFG +WA++FI    L   ED D GL L
Sbjct: 76  VNDPVLGWVLLGVFGTMWAIWFIGQKDLGDFEDADDGLKL 115

[Close]

BLAST of HG10006531 vs. ExPASy TrEMBL
Match: A0A1S3C2B0 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.1e-54
Identity = 118/133 (88.72%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVS 60
           MASTLL HSRLLLKGSSK+LPS  MAA RLP LQKMK G IKC+VEEK EGKKSEESMV 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPRLPTLQKMKMGRIKCKVEEKPEGKKSEESMVP 60

Query: 61  GTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYA 120
           GTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSNNLLGWILAG+FGLIWALYF+YA
Sbjct: 61  GTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSNNLLGWILAGMFGLIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDEDEDSGLSL
Sbjct: 121 SSLDEDEDSGLSL 133

[Close]

BLAST of HG10006531 vs. ExPASy TrEMBL
Match: A0A0A0LJA2 (PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.4e-53
Identity = 121/134 (90.30%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKK-SEESMV 60
           MASTLL HSRLLLKGSSK+L SP MAAHRLP LQKMKKGGIKC VEEK EGKK SEESMV
Sbjct: 1   MASTLLPHSRLLLKGSSKLLTSPTMAAHRLPTLQKMKKGGIKCSVEEKPEGKKLSEESMV 60

Query: 61  SGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIY 120
            GTV AVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILA VF LIWALYF+Y
Sbjct: 61  PGTVGAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAVVFALIWALYFVY 120

Query: 121 ASSLDEDEDSGLSL 134
           ASSLDEDEDSGLSL
Sbjct: 121 ASSLDEDEDSGLSL 134

[Close]

BLAST of HG10006531 vs. ExPASy TrEMBL
Match: A0A6J1FBR0 (PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.9e-50
Identity = 106/133 (79.70%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVS 60
           MASTLLSHS + LKGS K+LP P MAAHRLP++QKMKKGGIKC++EEK EGK+S+ES++S
Sbjct: 1   MASTLLSHSGITLKGSPKLLPPPLMAAHRLPVVQKMKKGGIKCKLEEKQEGKRSKESLIS 60

Query: 61  GTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYA 120
           GTV A+A   +A AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAG+FG IWALYF+YA
Sbjct: 61  GTVAAMATTVVAMAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGMFGFIWALYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSL+EDEDSGLSL
Sbjct: 121 SSLEEDEDSGLSL 133

[Close]

BLAST of HG10006531 vs. ExPASy TrEMBL
Match: A0A1S4E257 (PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.7e-49
Identity = 117/155 (75.48%), Postives = 122/155 (78.71%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHR----------------------LPMLQKMKK 60
           MASTLL HSRLLLKGSSK+LPS  MAA                        LP LQKMK 
Sbjct: 1   MASTLLPHSRLLLKGSSKLLPSSTMAAPTFSLLLSVLMDRQISLSNKEEIGLPTLQKMKM 60

Query: 61  GGIKCRVEEKAEGKKSEESMVSGTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSN 120
           G IKC+VEEK EGKKSEESMV GTV AVAMAALAAAGPAVALVDER+STEGTGLPFGLSN
Sbjct: 61  GRIKCKVEEKPEGKKSEESMVPGTVAAVAMAALAAAGPAVALVDERMSTEGTGLPFGLSN 120

Query: 121 NLLGWILAGVFGLIWALYFIYASSLDEDEDSGLSL 134
           NLLGWILAG+FGLIWALYF+YASSLDEDEDSGLSL
Sbjct: 121 NLLGWILAGMFGLIWALYFVYASSLDEDEDSGLSL 155

[Close]

BLAST of HG10006531 vs. ExPASy TrEMBL
Match: A0A6J1KED2 (PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111493586 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.0e-48
Identity = 108/133 (81.20%), Postives = 119/133 (89.47%), Query Frame = 0


Query: 1   MASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVS 60
           MAS+LLS SR+LLKGSS +LPSP MAAHRLP   KMK+  IKC+ EEK EGK+SEE MVS
Sbjct: 1   MASSLLSPSRILLKGSSMILPSPLMAAHRLP---KMKRRAIKCKAEEKREGKRSEERMVS 60

Query: 61  GTVVAVAMAALAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIYA 120
           GTV AVAMA +AAAGPAVALVDERLSTEGTGLPFGLSNNLLGWIL G+FGLIW+LYF+YA
Sbjct: 61  GTVAAVAMATMAAAGPAVALVDERLSTEGTGLPFGLSNNLLGWILVGMFGLIWSLYFVYA 120

Query: 121 SSLDEDEDSGLSL 134
           SSLDED+DSGLSL
Sbjct: 121 SSLDEDDDSGLSL 130

[Close]

BLAST of HG10006531 vs. TAIR 10
Match: AT2G30570.1 (photosystem II reaction center W )

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26
Identity = 72/134 (53.73%), Postives = 92/134 (68.66%), Query Frame = 0


Query: 2   ASTLLSHSRLLLKGSSKVLPSPAMAAHRLPMLQKMKKGGIKCRVEEKAEGKKSEESMVSG 61
           AST+ +    LL   +  + +P +    LP + K KKGG++C +E     K+   S++  
Sbjct: 8   ASTVSAARPALLLKPTVAISAPVLG---LPPMGK-KKGGVRCSMET----KQGNVSVMGA 67

Query: 62  TVVAVAMAALAA--AGPAVALVDERLSTEGTGLPFGLSNNLLGWILAGVFGLIWALYFIY 121
            V A A AAL A  + PA+ALVDER+STEGTGLPFGLSNNLLGWIL GVFGLIW  +F+Y
Sbjct: 68  GVSAAATAALTAVMSNPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTFFFVY 127

Query: 122 ASSLDEDEDSGLSL 134
            SSL+EDE+SGLSL
Sbjct: 128 TSSLEEDEESGLSL 133

The following BLAST results are available for this feature:

BLAST of HG10006531 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890119.1	2.3e-58	93.98	photosystem II reaction center W protein, chloroplastic-like [Benincasa hispida]	[more]
XP_008456049.1	1.7e-53	88.72	PREDICTED: photosystem II reaction center W protein, chloroplastic-like isoform ...	[more]
XP_004139238.1	4.9e-53	90.30	photosystem II reaction center W protein, chloroplastic [Cucumis sativus] >KGN60...	[more]
XP_023521133.1	3.0e-50	81.20	photosystem II reaction center W protein, chloroplastic-like [Cucurbita pepo sub...	[more]
XP_022937622.1	3.9e-50	79.70	photosystem II reaction center W protein, chloroplastic-like [Cucurbita moschata...	[more]

BLAST of HG10006531 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39194	2.0e-25	53.73	Photosystem II reaction center W protein, chloroplastic OS=Arabidopsis thaliana ...	[more]
Q41387	6.5e-24	49.63	Photosystem II reaction center W protein, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q5ZBY9	1.3e-19	51.49	Photosystem II reaction center W protein, chloroplastic OS=Oryza sativa subsp. j...	[more]
Q9SPI9	1.4e-10	38.00	Photosystem II reaction center W protein, chloroplastic OS=Chlamydomonas reinhar...	[more]

BLAST of HG10006531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2B0	8.1e-54	88.72	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A0A0LJA2	2.4e-53	90.30	PSII 6.1 kDa protein OS=Cucumis sativus OX=3659 GN=Csa_2G010330 PE=3 SV=1	[more]
A0A6J1FBR0	1.9e-50	79.70	PSII 6.1 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111443974 PE=3 SV=1	[more]
A0A1S4E257	2.7e-49	75.48	PSII 6.1 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496095 PE=3 SV=1	[more]
A0A6J1KED2	1.0e-48	81.20	PSII 6.1 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111493586 PE=3 SV=1	[more]

BLAST of HG10006531 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30570.1	1.4e-26	53.73	photosystem II reaction center W	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009806	Photosystem II PsbW, class 2	PFAM	PF07123	PsbW	coord: 27..133 e-value: 4.1E-43 score: 146.6
IPR009806	Photosystem II PsbW, class 2	PANTHER	PTHR34552	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC	coord: 2..133
None	No IPR available	PANTHER	PTHR34552:SF5	PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC-LIKE	coord: 2..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006531.1	HG10006531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042549	photosystem II stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009507	chloroplast