HG10006529 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006529
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pathogenesis-related protein PR-4-like
Location	Chr07: 19574989 .. 19575303 (+)
RNA-Seq Expression	HG10006529
Synteny	HG10006529

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAAAAAGTTTGGTGATTTTGTTGTTGGGTTTGTGGGCGAGCCTGCTCGGTGGTGGCAAGGGGCAAAGCGCAAGCAATGTGTGGGCAACCTATAATTTGTACAATCCTCAAACCATAGACTGGAATTATTTAATAGCCAGTGTGTTTTGTGCAACTTGGGATGCTAATAAGCCATTGAATTGGCGCAGCCACTACGGTTGGACTGCCTTTTGTGGCCCCGTCGGCCCTATCGGCCGAGATTCTTGTGGCCGTTGCCTTAAGGTATGCGTCCATCTCTCTCGTATTCGGTTCGGTTCGGTCCAATTTTAA

mRNA sequence

ATGGAGAAAAAAAGTTTGGTGATTTTGTTGTTGGGTTTGTGGGCGAGCCTGCTCGGTGGTGGCAAGGGGCAAAGCGCAAGCAATGTGTGGGCAACCTATAATTTGTACAATCCTCAAACCATAGACTGGAATTATTTAATAGCCAGTGTGTTTTGTGCAACTTGGGATGCTAATAAGCCATTGAATTGGCGCAGCCACTACGGTTGGACTGCCTTTTGTGGCCCCGTCGGCCCTATCGGCCGAGATTCTTGTGGCCGTTGCCTTAAGGTATGCGTCCATCTCTCTCGTATTCGGTTCGGTTCGGTCCAATTTTAA

Coding sequence (CDS)

ATGGAGAAAAAAAGTTTGGTGATTTTGTTGTTGGGTTTGTGGGCGAGCCTGCTCGGTGGTGGCAAGGGGCAAAGCGCAAGCAATGTGTGGGCAACCTATAATTTGTACAATCCTCAAACCATAGACTGGAATTATTTAATAGCCAGTGTGTTTTGTGCAACTTGGGATGCTAATAAGCCATTGAATTGGCGCAGCCACTACGGTTGGACTGCCTTTTGTGGCCCCGTCGGCCCTATCGGCCGAGATTCTTGTGGCCGTTGCCTTAAGGTATGCGTCCATCTCTCTCGTATTCGGTTCGGTTCGGTCCAATTTTAA

Protein sequence

MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKPLNWRSHYGWTAFCGPVGPIGRDSCGRCLKVCVHLSRIRFGSVQF

Homology

[Close]

BLAST of HG10006529 vs. NCBI nr
Match: XP_038891021.1 (pathogenesis-related protein PR-4-like [Benincasa hispida])

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-39
Identity = 73/90 (81.11%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          M++ SL++L+L LWASL+GGG GQSASNV ATYNLYNPQTI+WNYL ASV+CATWDANKP
Sbjct: 1  MKRGSLIVLMLALWASLVGGGNGQSASNVLATYNLYNPQTINWNYLTASVYCATWDANKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          LNWRSHYGWTAFCGP GP GRDSCG CL+V
Sbjct: 61 LNWRSHYGWTAFCGPAGPTGRDSCGCCLRV 90

[Close]

BLAST of HG10006529 vs. NCBI nr
Match: KAA0063601.1 (pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 5.3e-39
Identity = 73/90 (81.11%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          M++ SL++  L LWASLLG GKGQSASNV ATYN YNPQTI WNY+ ASVFCATWDANKP
Sbjct: 1  MKRGSLIVFALALWASLLGSGKGQSASNVIATYNFYNPQTIGWNYMTASVFCATWDANKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          LNWR HYGWTAFCGPVGP GRDSCGRCL+V
Sbjct: 61 LNWRKHYGWTAFCGPVGPTGRDSCGRCLRV 90

[Close]

BLAST of HG10006529 vs. NCBI nr
Match: XP_004139241.1 (pathogenesis-related protein PR-4 [Cucumis sativus] >KGN60802.1 hypothetical protein Csa_019189 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-37
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MEKKSLVILL-LGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANK 60
          M++ SL+I+  L LWASLLG GKGQSASNV ATYN YNPQTI WNY+ ASVFC+TWDANK
Sbjct: 1  MKRGSLIIIFALALWASLLGSGKGQSASNVLATYNFYNPQTIGWNYMTASVFCSTWDANK 60

Query: 61 PLNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          PLNWR HYGWTAFCGPVGP GR+SCGRCL+V
Sbjct: 61 PLNWRKHYGWTAFCGPVGPSGRNSCGRCLRV 91

[Close]

BLAST of HG10006529 vs. NCBI nr
Match: XP_022143159.1 (pathogenesis-related protein PR-4-like [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 2.9e-29
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          ME+  LV+L+LGL   LLG    QSA+NV ATY+LYNPQ I+W+YL ASVFCATWDANKP
Sbjct: 1  MERGILVMLVLGL--CLLGVANAQSATNVRATYHLYNPQNINWDYLRASVFCATWDANKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          L WR  YGWTAFCGPVGP G+ SCGRCL+V
Sbjct: 61 LEWRRRYGWTAFCGPVGPRGQASCGRCLRV 88

[Close]

BLAST of HG10006529 vs. NCBI nr
Match: XP_031129054.1 (pathogenesis-related protein PR-4-like [Ipomoea triloba])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 61/90 (67.78%), Postives = 70/90 (77.78%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          ME+     LLL +  +++GG   QSA+NV ATYN+YNPQ I+W+Y  ASVFCATWD NKP
Sbjct: 1  MERVGAACLLLVV--AMVGGAAAQSATNVRATYNIYNPQNINWDYYRASVFCATWDGNKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          L WR  YGWTAFCGPVGP GRDSCGRCLKV
Sbjct: 61 LEWRRKYGWTAFCGPVGPRGRDSCGRCLKV 88

[Close]

BLAST of HG10006529 vs. ExPASy Swiss-Prot
Match: P09762 (Wound-induced protein WIN2 OS=Solanum tuberosum OX=4113 GN=WIN2 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.1e-26
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 0


Query: 21  GKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKPLNWRSHYGWTAFCGPVGPIG 80
           G+G SA NV ATY++YNPQ + W+    S +C+TWDANKP  WRS YGWTAFCGPVGP G
Sbjct: 74  GQGGSAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRG 133

Query: 81  RDSCGRCLKV 91
           RDSCG+CL+V
Sbjct: 134 RDSCGKCLRV 143

[Close]

BLAST of HG10006529 vs. ExPASy Swiss-Prot
Match: P29062 (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-26
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 24 QSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKPLNWRSHYGWTAFCGPVGPIGRDS 83
          QSA+NV +TY+LYNPQ I+W+   AS FCATWDA+KPL WR  YGWTAFCGP GP G+DS
Sbjct: 26 QSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDS 85

Query: 84 CGRCLKV 91
          CGRCL+V
Sbjct: 86 CGRCLRV 92

[Close]

BLAST of HG10006529 vs. ExPASy Swiss-Prot
Match: P32045 (Pathogenesis-related protein P2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.2e-26
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          ME+ + + +   +   ++     QSA+NV ATY+LYNPQ I+W+   ASV+CATWDA+KP
Sbjct: 1  MERVNKLCVAFFVINMMMAVAAAQSATNVRATYHLYNPQNINWDLRTASVYCATWDADKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          L WR  YGWTAFCGP GP G+ SCGRCL+V
Sbjct: 61 LEWRRRYGWTAFCGPAGPTGQASCGRCLRV 90

[Close]

BLAST of HG10006529 vs. ExPASy Swiss-Prot
Match: P29063 (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-25
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 0


Query: 6  LVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKPLNWRS 65
          L + LL + + ++     QSA+NV +TY+LYNPQ I+W+   AS FCATWDA+KPL WR 
Sbjct: 9  LCVALL-IMSVMMAMAAAQSATNVRSTYHLYNPQNINWDLRAASAFCATWDADKPLAWRQ 68

Query: 66 HYGWTAFCGPVGPIGRDSCGRCLKV 91
           YGWTAFCGP GP G+DSCGRCL+V
Sbjct: 69 KYGWTAFCGPAGPRGQDSCGRCLRV 92

[Close]

BLAST of HG10006529 vs. ExPASy Swiss-Prot
Match: P09761 (Wound-induced protein WIN1 OS=Solanum tuberosum OX=4113 GN=WIN1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-25
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 25  SASNVWATYNLYNPQTIDWNYLIASVFCATWDANKPLNWRSHYGWTAFCGPVGPIGRDSC 84
           SA NV ATY++YNPQ + W+    S +C+TWDANKPL+WR  YGWTAFCGPVGP GRDSC
Sbjct: 79  SAQNVRATYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSC 138

Query: 85  GRCLKV 91
           G+CL+V
Sbjct: 139 GKCLRV 144

[Close]

BLAST of HG10006529 vs. ExPASy TrEMBL
Match: A0A5A7VCZ9 (Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001120 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.6e-39
Identity = 73/90 (81.11%), Postives = 79/90 (87.78%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          M++ SL++  L LWASLLG GKGQSASNV ATYN YNPQTI WNY+ ASVFCATWDANKP
Sbjct: 1  MKRGSLIVFALALWASLLGSGKGQSASNVIATYNFYNPQTIGWNYMTASVFCATWDANKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          LNWR HYGWTAFCGPVGP GRDSCGRCL+V
Sbjct: 61 LNWRKHYGWTAFCGPVGPTGRDSCGRCLRV 90

[Close]

BLAST of HG10006529 vs. ExPASy TrEMBL
Match: A0A0A0LJA9 (Barwin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010370 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.9e-37
Identity = 72/91 (79.12%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MEKKSLVILL-LGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANK 60
          M++ SL+I+  L LWASLLG GKGQSASNV ATYN YNPQTI WNY+ ASVFC+TWDANK
Sbjct: 1  MKRGSLIIIFALALWASLLGSGKGQSASNVLATYNFYNPQTIGWNYMTASVFCSTWDANK 60

Query: 61 PLNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          PLNWR HYGWTAFCGPVGP GR+SCGRCL+V
Sbjct: 61 PLNWRKHYGWTAFCGPVGPSGRNSCGRCLRV 91

[Close]

BLAST of HG10006529 vs. ExPASy TrEMBL
Match: A0A6J1CNH9 (pathogenesis-related protein PR-4-like OS=Momordica charantia OX=3673 GN=LOC111013095 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.4e-29
Identity = 64/90 (71.11%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          ME+  LV+L+LGL   LLG    QSA+NV ATY+LYNPQ I+W+YL ASVFCATWDANKP
Sbjct: 1  MERGILVMLVLGL--CLLGVANAQSATNVRATYHLYNPQNINWDYLRASVFCATWDANKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          L WR  YGWTAFCGPVGP G+ SCGRCL+V
Sbjct: 61 LEWRRRYGWTAFCGPVGPRGQASCGRCLRV 88

[Close]

BLAST of HG10006529 vs. ExPASy TrEMBL
Match: A0A5D3D4G8 (Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001500 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.4e-29
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          MEK S++++L+ L   +L     QSA+NV ATY+LYNPQ I+W+YL ASVFCATWDANKP
Sbjct: 1  MEKGSIMMILV-LALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          L WR  YGWTAFCGPVGP GRDSCGRCL+V
Sbjct: 61 LEWRRRYGWTAFCGPVGPRGRDSCGRCLRV 89

[Close]

BLAST of HG10006529 vs. ExPASy TrEMBL
Match: A0A1S3C3H6 (pathogenesis-related protein PR-4-like OS=Cucumis melo OX=3656 GN=LOC103496070 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.4e-29
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 0


Query: 1  MEKKSLVILLLGLWASLLGGGKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKP 60
          MEK S++++L+ L   +L     QSA+NV ATY+LYNPQ I+W+YL ASVFCATWDANKP
Sbjct: 1  MEKGSIMMILV-LALGVLSLANAQSATNVRATYHLYNPQDINWDYLRASVFCATWDANKP 60

Query: 61 LNWRSHYGWTAFCGPVGPIGRDSCGRCLKV 91
          L WR  YGWTAFCGPVGP GRDSCGRCL+V
Sbjct: 61 LEWRRRYGWTAFCGPVGPRGRDSCGRCLRV 89

[Close]

BLAST of HG10006529 vs. TAIR 10
Match: AT3G04720.1 (pathogenesis-related 4 )

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-24
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 0


Query: 21  GKGQSASNVWATYNLYNPQTIDWNYLIASVFCATWDANKPLNWRSHYGWTAFCGPVGPIG 80
           G G+SASNV ATY+ YNP   +W+    S +C+TWDA+KP  WRS YGWTAFCGP GP G
Sbjct: 69  GPGESASNVRATYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRG 128

Query: 81  RDSCGRCLKV 91
           + SCG+CL+V
Sbjct: 129 QASCGKCLRV 138

The following BLAST results are available for this feature:

BLAST of HG10006529 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891021.1	2.4e-39	81.11	pathogenesis-related protein PR-4-like [Benincasa hispida]	[more]
KAA0063601.1	5.3e-39	81.11	pathogenesis-related protein PR-4-like [Cucumis melo var. makuwa]	[more]
XP_004139241.1	3.8e-37	79.12	pathogenesis-related protein PR-4 [Cucumis sativus] >KGN60802.1 hypothetical pro...	[more]
XP_022143159.1	2.9e-29	71.11	pathogenesis-related protein PR-4-like [Momordica charantia]	[more]
XP_031129054.1	1.1e-28	67.78	pathogenesis-related protein PR-4-like [Ipomoea triloba]	[more]

BLAST of HG10006529 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09762	4.1e-26	67.14	Wound-induced protein WIN2 OS=Solanum tuberosum OX=4113 GN=WIN2 PE=2 SV=1	[more]
P29062	5.4e-26	71.64	Pathogenesis-related protein PR-4A OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
P32045	9.2e-26	55.56	Pathogenesis-related protein P2 OS=Solanum lycopersicum OX=4081 PE=2 SV=1	[more]
P29063	1.2e-25	60.00	Pathogenesis-related protein PR-4B OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
P09761	2.7e-25	68.18	Wound-induced protein WIN1 OS=Solanum tuberosum OX=4113 GN=WIN1 PE=2 SV=1	[more]

BLAST of HG10006529 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCZ9	2.6e-39	81.11	Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0LJA9	1.9e-37	79.12	Barwin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010370 PE=4...	[more]
A0A6J1CNH9	1.4e-29	71.11	pathogenesis-related protein PR-4-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3D4G8	5.4e-29	68.89	Pathogenesis-related protein PR-4-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C3H6	5.4e-29	68.89	pathogenesis-related protein PR-4-like OS=Cucumis melo OX=3656 GN=LOC103496070 P...	[more]

BLAST of HG10006529 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04720.1	4.0e-24	61.43	pathogenesis-related 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001153	Barwin domain	PRINTS	PR00602	BARWIN	coord: 59..77 score: 81.05 coord: 78..96 score: 42.11
IPR001153	Barwin domain	PFAM	PF00967	Barwin	coord: 25..91 e-value: 1.0E-24 score: 86.7
IPR001153	Barwin domain	PROSITE	PS51174	BARWIN_3	coord: 24..104 score: 43.020889
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 24..95 e-value: 1.1E-24 score: 88.6
IPR036908	RlpA-like domain superfamily	SUPERFAMILY	50685	Barwin-like endoglucanases	coord: 24..91
IPR044301	Pathogenesis-related protein-4	PANTHER	PTHR46351	WOUND-INDUCED PROTEIN WIN2	coord: 6..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006529.1	HG10006529.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0090501	RNA phosphodiester bond hydrolysis
biological_process	GO:0006952	defense response
molecular_function	GO:0004540	ribonuclease activity