HG10006494 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006494
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	WD repeat-containing protein 48
Location	Chr07: 19194567 .. 19196233 (-)
RNA-Seq Expression	HG10006494
Synteny	HG10006494

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGTGGGTGATTTACAAGGTCTGCCAACCGTTTGTGTTTTTAATTTATATCAGGACCTAGTCTTTTGCGTTAATCTGCTACAGGATTGCCAACACAGAGTTGCATCCAGTCACCTGACAATCTACTGTGTAATTTCTAGTGCACTTGATTACTTGTTGCTGAAATTTAGTTTACGTACGTCTGTTGAAGAATTTTAAATATGAAATGTGGGTTATAAAATACAGGTCGATTGAATGTGATATTGAACCCATTTTCCTTTTAATAATGTAGGTTGTAAATTATGTCATAGAGAAGATGGTTCTTGACAAGCCATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTGGACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTATAGAAATCTTATGCAATAATCAGGTAAATGAAACTACATTGTCTCGTCCGTGTGGAGGAATATACAATGTTGCCTTTTTGCTAGGCGTTTAGGCACTCAAAAGAGTTGCAGTACTGAGTTGTATTAGAGGTTTCTTATTTAACTCACGTTGAATTATAATTACTGTTTTGTTTCATTTTCCATTTTTTCTTACTTTACACCCTCCTTTTAAAATTGGAAGCACAAACTTTTCATAGAAATAATTTTATCAAAAAACTTTTCATAGAAATAATGAAAAGAGATTAGTGCTCAGACTACAAGGATACTAAAAGTAATGAAAATAAGCCAAACTAAACCATAGACAAAGTACGGCAAACAAAGAACTATGCTGGAAAAATAAAGGCCTTCCAATTTAAACCTTACTTTAACTGTTAAGATACTCTGGTAACTAGATTTGAATCTAGATGGCGCAGGCCATTTTTCATAATCATCTCATCTGCATTGTTTGTTTTGCCGCCAAGTTTCTTTCATAATCATCTGCATTGCTTGTTTTGCATATTCATCCTTTGTTTTTAATCAAAGGAAAATTATCTCTTTCTGAAGTGCAGAATGAATGAATTTGGGTCTCTTTTGAAAACTAGATAAAATTGTGCTTCTAGTCTAGTCAGTTTTACCTTCGTTTCTCATCTCTCTGAATGAATGTGGGTGCTGAAGTTCATTTTTGCTGTTTCATGTATCTAAGTACCTTTGTATTTTGTATATTTAGTATCTATTTATATAGCTTACTTGCTCAAAGAAGGAATGCATTAAAATCTTTATATGTTTTGGGATCTTACAAAGTGGAAAAGCTGAGATTGTATGGGATCTTACAAAGTGGAAAAGCTGAGATTGTATTGGGTTTGGAGCTTTTATGCTCATTTTGTAACGCTTAACAACTGATCCTGGACAACATCATACAGTCAATAATTAAGGGCTTCTGGCTTGTTTTTTCAATCTTTCAGAGTCTTGGCATTAAATTCCGTACACACGGTTTGTGGTATTTTTTGGTGTTGTATTTAGCAGCTCTTCTTACACACATTTTTTTTTTTGGTTACATTACAGGTCTTGTCTCCTGATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTTCAAGGCAGGTGA

mRNA sequence

ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGTTGTAAATTATGTCATAGAGAAGATGGTTCTTGACAAGCCATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTGGACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTATAGAAATCTTATGCAATAATCAGGTCTTGTCTCCTGATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTTCAAGGCAGGTGA

Coding sequence (CDS)

ATGGATAATTTATGGGCAGAAGGGAAATTTTATGTCCAACCCAACCCTCTTACTGCGTTGGGCTTGGAGGTTGTAAATTATGTCATAGAGAAGATGGTTCTTGACAAGCCATTGGATAATGTAAATCCGGATGTTCCTTTTGGTCCTGGACTCTCTTCGACAGTTGGAGACGGATCATTTCGATCTGGTTTAAAGCCTTGGCAAAAGCTTAAGCCTTCTATAGAAATCTTATGCAATAATCAGGTCTTGTCTCCTGATATGAGTTTAGCCACAGTTAGGAATTACATCTGGAAGAAGCCAGAGGATTTGGTTCTCAATTACAGAGTGGTTCAAGGCAGGTGA

Protein sequence

MDNLWAEGKFYVQPNPLTALGLEVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR

Homology

[Close]

BLAST of HG10006494 vs. NCBI nr
Match: XP_038890074.1 (WD repeat-containing protein 48 [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.3e-43
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDN  PDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 667 KVVNYVIEKMVLDKPLDNATPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 726

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 727 LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of HG10006494 vs. NCBI nr
Match: ADN33906.1 (nucleotide binding protein [Cucumis melo subsp. melo])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 615 KVVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQV 674

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 675 LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 705

[Close]

BLAST of HG10006494 vs. NCBI nr
Match: XP_022999257.1 (WD repeat-containing protein 48-like [Cucurbita maxima])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 666 KVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 725

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQ 112
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQ
Sbjct: 726 LSPDMSLATVRNYIWKKPEDLVLNYRVVQ 754

[Close]

BLAST of HG10006494 vs. NCBI nr
Match: XP_004139215.1 (WD repeat-containing protein 48 [Cucumis sativus] >KGN60837.1 hypothetical protein Csa_019327 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 667 KVVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQV 726

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 727 LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of HG10006494 vs. NCBI nr
Match: KAA0063633.1 (WD repeat-containing protein 48 [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 667 KVVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQV 726

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 727 LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of HG10006494 vs. ExPASy Swiss-Prot
Match: Q16MY0 (WD repeat-containing protein 48 homolog OS=Aedes aegypti OX=7159 GN=AAEL012158 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 27/88 (30.68%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKL--KPSIEILCNN 82
           +V  +V+EK+        +  D+P   G S++  + S         ++  +  IE+LCN+
Sbjct: 576 KVCEHVLEKV--------LGADLPASTGNSNSSQNNSQSDANSEGSQVPAEERIELLCND 635

Query: 83  QVLSPDMSLATVRNYIWKKPEDLVLNYR 109
            +  P+M L TVR++IWK+  DL  +YR
Sbjct: 636 VICDPNMDLRTVRHFIWKQSSDLTFHYR 655

[Close]

BLAST of HG10006494 vs. ExPASy Swiss-Prot
Match: Q32PG3 (WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-05
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 74  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR 109
           IE+LC +QVL P+M L TV+++IWK   DL L+YR
Sbjct: 639 IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673

[Close]

BLAST of HG10006494 vs. ExPASy Swiss-Prot
Match: Q5F3K4 (WD repeat-containing protein 48 OS=Gallus gallus OX=9031 GN=WDR48 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-05
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 74  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR 109
           IE+LC +QVL P+M L TV+++IWK   DL L+YR
Sbjct: 640 IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 674

[Close]

BLAST of HG10006494 vs. ExPASy Swiss-Prot
Match: Q8TAF3 (WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-05
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 74  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR 109
           IE+LC +QVL P+M L TV+++IWK   DL L+YR
Sbjct: 639 IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673

[Close]

BLAST of HG10006494 vs. ExPASy Swiss-Prot
Match: Q4R2Z6 (WD repeat-containing protein 48 OS=Macaca fascicularis OX=9541 GN=WDR48 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.4e-05
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0


Query: 74  IEILCNNQVLSPDMSLATVRNYIWKKPEDLVLNYR 109
           IE+LC +QVL P+M L TV+++IWK   DL L+YR
Sbjct: 584 IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 618

[Close]

BLAST of HG10006494 vs. ExPASy TrEMBL
Match: A0A6J1KAE3 (WD repeat-containing protein 48-like OS=Cucurbita maxima OX=3661 GN=LOC111493682 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 666 KVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 725

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQ 112
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQ
Sbjct: 726 LSPDMSLATVRNYIWKKPEDLVLNYRVVQ 754

[Close]

BLAST of HG10006494 vs. ExPASy TrEMBL
Match: A0A5D3D4C5 (WD repeat-containing protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001170 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 667 KVVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQV 726

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 727 LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of HG10006494 vs. ExPASy TrEMBL
Match: A0A5A7V6A0 (WD repeat-containing protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001460 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 667 KVVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQV 726

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 727 LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of HG10006494 vs. ExPASy TrEMBL
Match: E5GBR4 (Nucleotide binding protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 615 KVVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQV 674

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 675 LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 705

[Close]

BLAST of HG10006494 vs. ExPASy TrEMBL
Match: A0A0A0LJF0 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G012680 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.1e-43
Identity = 88/91 (96.70%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPDVPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCNNQV 82
           +VVNYVIEKMVLDKPLDN+NPDVPFGPGLSSTVGD SFRSGLKPWQKLKPSIEILCNNQV
Sbjct: 667 KVVNYVIEKMVLDKPLDNLNPDVPFGPGLSSTVGDVSFRSGLKPWQKLKPSIEILCNNQV 726

Query: 83  LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR
Sbjct: 727 LSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 757

[Close]

BLAST of HG10006494 vs. TAIR 10
Match: AT3G05090.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-29
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCN 82
           +V NYV+EKMVLD PLD++  D   V  G       G+G  +SGLKPWQKL+PSIEILCN
Sbjct: 660 KVTNYVVEKMVLDNPLDSLAIDAASVSGGQPQPLFSGNGLLQSGLKPWQKLRPSIEILCN 719

Query: 83  NQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           +QVLSPDMSLATVR Y+WKKPEDL+LNYRV   R
Sbjct: 720 SQVLSPDMSLATVRAYVWKKPEDLILNYRVAIAR 753

[Close]

BLAST of HG10006494 vs. TAIR 10
Match: AT3G05090.2 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-29
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 23  EVVNYVIEKMVLDKPLDNVNPD---VPFGPGLSSTVGDGSFRSGLKPWQKLKPSIEILCN 82
           +V NYV+EKMVLD PLD++  D   V  G       G+G  +SGLKPWQKL+PSIEILCN
Sbjct: 660 KVTNYVVEKMVLDNPLDSLAIDAASVSGGQPQPLFSGNGLLQSGLKPWQKLRPSIEILCN 719

Query: 83  NQVLSPDMSLATVRNYIWKKPEDLVLNYRVVQGR 114
           +QVLSPDMSLATVR Y+WKKPEDL+LNYRV   R
Sbjct: 720 SQVLSPDMSLATVRAYVWKKPEDLILNYRVAIAR 753

The following BLAST results are available for this feature:

BLAST of HG10006494 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890074.1	1.3e-43	96.70	WD repeat-containing protein 48 [Benincasa hispida]	[more]
ADN33906.1	2.3e-43	96.70	nucleotide binding protein [Cucumis melo subsp. melo]	[more]
XP_022999257.1	2.3e-43	98.88	WD repeat-containing protein 48-like [Cucurbita maxima]	[more]
XP_004139215.1	2.3e-43	96.70	WD repeat-containing protein 48 [Cucumis sativus] >KGN60837.1 hypothetical prote...	[more]
KAA0063633.1	2.3e-43	96.70	WD repeat-containing protein 48 [Cucumis melo var. makuwa]	[more]

BLAST of HG10006494 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q16MY0	3.3e-05	30.68	WD repeat-containing protein 48 homolog OS=Aedes aegypti OX=7159 GN=AAEL012158 P...	[more]
Q32PG3	4.4e-05	57.14	WD repeat-containing protein 48 OS=Bos taurus OX=9913 GN=WDR48 PE=2 SV=1	[more]
Q5F3K4	4.4e-05	57.14	WD repeat-containing protein 48 OS=Gallus gallus OX=9031 GN=WDR48 PE=2 SV=1	[more]
Q8TAF3	4.4e-05	57.14	WD repeat-containing protein 48 OS=Homo sapiens OX=9606 GN=WDR48 PE=1 SV=1	[more]
Q4R2Z6	4.4e-05	57.14	WD repeat-containing protein 48 OS=Macaca fascicularis OX=9541 GN=WDR48 PE=2 SV=...	[more]

BLAST of HG10006494 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KAE3	1.1e-43	98.88	WD repeat-containing protein 48-like OS=Cucurbita maxima OX=3661 GN=LOC111493682...	[more]
A0A5D3D4C5	1.1e-43	96.70	WD repeat-containing protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V6A0	1.1e-43	96.70	WD repeat-containing protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
E5GBR4	1.1e-43	96.70	Nucleotide binding protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A0A0LJF0	1.1e-43	96.70	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]

BLAST of HG10006494 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05090.1	4.4e-29	65.96	Transducin/WD40 repeat-like superfamily protein	[more]
AT3G05090.2	4.4e-29	65.96	Transducin/WD40 repeat-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.20.90		coord: 63..110 e-value: 6.5E-6 score: 27.9
None	No IPR available	PANTHER	PTHR19862	WD REPEAT-CONTAINING PROTEIN 48	coord: 23..110
None	No IPR available	PANTHER	PTHR19862:SF19	BNAC03G34120D PROTEIN	coord: 23..110
IPR021772	WDR48/Bun107	PFAM	PF11816	DUF3337	coord: 25..108 e-value: 6.2E-14 score: 52.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006494.1	HG10006494.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0016579	protein deubiquitination
molecular_function	GO:0043130	ubiquitin binding