HG10006492 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006492
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 19170444 .. 19171028 (-)
RNA-Seq Expression	HG10006492
Synteny	HG10006492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTTTCGATATGGTTTTTTTTGTCGCCCAGACAACAAGAAAATTGAATCACGCCCTGAAGAAAAGAGCAAAACAAGCCATATCTCTGATTCCAAATCTAAGCCAGCTCGTGTCGATGCCGGAGGAAGGCGACAACCTATCTCCGTGCTGCCCGGAACAAGGTATGTTACGACAACCGAGAAATATACTGAAGAAGTTAACTCAAGTACTTCAAGTGGTAACTTCCAACATAACCATATTCTTAACCAGCCTATAGAATTCAATAAACTTATAGCCAAAGGCCAAAAGGAAGCAAGGCAGCCAAAACATGAAATGATTAGCTTAAGTGATCCAATGAATGATATTGAGAAGGCTATGGAGTACTTGAAAGAAGCTGTGAAACTTCACTCTGGCAAAAATAATGCTTCTTCTGCATCAGATCCTCATAAGAAAGATAGTTGCACAAAAACTATTGACAGCAAAGAAGCAGCACGACGGTACGGGAAGTTCGGGGCACCGACTGGCTCGGTGTCGGGTGCCAATGTAGCAACCATTGATTGCAAAGAGGCTGCTAGGAAGTATAAAGGTGCAACCGTGTGA

mRNA sequence

ATGGCTGATTTTCGATATGGTTTTTTTTGTCGCCCAGACAACAAGAAAATTGAATCACGCCCTGAAGAAAAGAGCAAAACAAGCCATATCTCTGATTCCAAATCTAAGCCAGCTCGTGTCGATGCCGGAGGAAGGCGACAACCTATCTCCGTGCTGCCCGGAACAAGGTATGTTACGACAACCGAGAAATATACTGAAGAAGTTAACTCAAGTACTTCAAGTGGTAACTTCCAACATAACCATATTCTTAACCAGCCTATAGAATTCAATAAACTTATAGCCAAAGGCCAAAAGGAAGCAAGGCAGCCAAAACATGAAATGATTAGCTTAAGTGATCCAATGAATGATATTGAGAAGGCTATGGAGTACTTGAAAGAAGCTGTGAAACTTCACTCTGGCAAAAATAATGCTTCTTCTGCATCAGATCCTCATAAGAAAGATAGTTGCACAAAAACTATTGACAGCAAAGAAGCAGCACGACGGTACGGGAAGTTCGGGGCACCGACTGGCTCGGTGTCGGGTGCCAATGTAGCAACCATTGATTGCAAAGAGGCTGCTAGGAAGTATAAAGGTGCAACCGTGTGA

Coding sequence (CDS)

ATGGCTGATTTTCGATATGGTTTTTTTTGTCGCCCAGACAACAAGAAAATTGAATCACGCCCTGAAGAAAAGAGCAAAACAAGCCATATCTCTGATTCCAAATCTAAGCCAGCTCGTGTCGATGCCGGAGGAAGGCGACAACCTATCTCCGTGCTGCCCGGAACAAGGTATGTTACGACAACCGAGAAATATACTGAAGAAGTTAACTCAAGTACTTCAAGTGGTAACTTCCAACATAACCATATTCTTAACCAGCCTATAGAATTCAATAAACTTATAGCCAAAGGCCAAAAGGAAGCAAGGCAGCCAAAACATGAAATGATTAGCTTAAGTGATCCAATGAATGATATTGAGAAGGCTATGGAGTACTTGAAAGAAGCTGTGAAACTTCACTCTGGCAAAAATAATGCTTCTTCTGCATCAGATCCTCATAAGAAAGATAGTTGCACAAAAACTATTGACAGCAAAGAAGCAGCACGACGGTACGGGAAGTTCGGGGCACCGACTGGCTCGGTGTCGGGTGCCAATGTAGCAACCATTGATTGCAAAGAGGCTGCTAGGAAGTATAAAGGTGCAACCGTGTGA

Protein sequence

MADFRYGFFCRPDNKKIESRPEEKSKTSHISDSKSKPARVDAGGRRQPISVLPGTRYVTTTEKYTEEVNSSTSSGNFQHNHILNQPIEFNKLIAKGQKEARQPKHEMISLSDPMNDIEKAMEYLKEAVKLHSGKNNASSASDPHKKDSCTKTIDSKEAARRYGKFGAPTGSVSGANVATIDCKEAARKYKGATV

Homology

[Close]

BLAST of HG10006492 vs. NCBI nr
Match: KGN60838.1 (hypothetical protein Csa_019431 [Cucumis sativus])

HSP 1 Score: 236.9 bits (603), Expect = 1.5e-58
Identity = 135/202 (66.83%), Postives = 151/202 (74.75%), Query Frame = 0


Query: 1   MADFRYGFFCRPDNKKIESRPEE-KSKTSHISDSKSKPARVDAGGRRQPISVLPGTRYVT 60
           MADFRYGFF RPDNKKIES P E KSK  HISD KSKP  +DAGGR+QPI++LP TRYVT
Sbjct: 1   MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60

Query: 61  TTEKYTEEVNS-------STSSGNFQHNHILNQPIEFNKLIAKGQKEARQPKHEMISLSD 120
             EKYTEEV++       ++  G    +  +NQ IEFNKL+A  QKEAR PK+EM  LS+
Sbjct: 61  PIEKYTEEVHTKKYEPVKNSDKGTLNSHLAINQRIEFNKLLANVQKEARLPKYEMRLLSE 120

Query: 121 PMNDIEKAMEYLKEAVKLHSGKNNASSASDPHKKDSCTKTIDSKEAARRYGKFGAPTGSV 180
           PM DI KA+E LKE V L   KNNA +AS   +KDSCTKTIDSKEAARRYGKFGAP   V
Sbjct: 121 PMTDIGKAIECLKEVVNLDCSKNNACAAS-ARRKDSCTKTIDSKEAARRYGKFGAPV-PV 180

Query: 181 SGANVATIDCKEAARKYKGATV 195
           S ANVATIDCKEAARKY GA V
Sbjct: 181 SNANVATIDCKEAARKYNGAAV 200

[Close]

BLAST of HG10006492 vs. NCBI nr
Match: KAA0063635.1 (hypothetical protein E6C27_scaffold329G001480 [Cucumis melo var. makuwa] >TYK18391.1 hypothetical protein E5676_scaffold456G001150 [Cucumis melo var. makuwa])

HSP 1 Score: 236.1 bits (601), Expect = 2.5e-58
Identity = 132/201 (65.67%), Postives = 151/201 (75.12%), Query Frame = 0


Query: 1   MADFRYGFFCRPDNKKIESRPEEKSKTSHISDSKSKPARVDAGGRRQPISVLPGTRYVTT 60
           MADFRYGFF RPDNKKIES PEEKS+  HIS+ KSKP  +DAGGR++P ++LP TRYVT 
Sbjct: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDAGGRQRPTAILPRTRYVTP 60

Query: 61  TEKYTEEVNS-------STSSGNFQHNHILNQPIEFNKLIAKGQKEARQPKHEMISLSDP 120
            EK+TEEV++       ++  G    N  +NQ IEFNKL+AK Q+E R PK+EM  LS+P
Sbjct: 61  IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP 120

Query: 121 MNDIEKAMEYLKEAVKLHSGKNNASSASDPHKKDSCTKTIDSKEAARRYGKFGAPTGSVS 180
           MNDI KA+E LKEAV L   KNNA SAS  H KDSCTKTIDSKEAARRYG FGA  G VS
Sbjct: 121 MNDIGKAIECLKEAVNLDCSKNNACSAS-YHHKDSCTKTIDSKEAARRYGTFGA-LGRVS 180

Query: 181 GANVATIDCKEAARKYKGATV 195
            AN ATI+CKEAARKY GA V
Sbjct: 181 SANEATINCKEAARKYNGAEV 199

[Close]

BLAST of HG10006492 vs. NCBI nr
Match: ADN33904.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 234.6 bits (597), Expect = 7.3e-58
Identity = 131/201 (65.17%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MADFRYGFFCRPDNKKIESRPEEKSKTSHISDSKSKPARVDAGGRRQPISVLPGTRYVTT 60
           MADFRYGFF RPDNKKIES PEEKS+  HIS+ KSKP  +D GGR++P ++LP TRYVT 
Sbjct: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60

Query: 61  TEKYTEEVNS-------STSSGNFQHNHILNQPIEFNKLIAKGQKEARQPKHEMISLSDP 120
            EK+TEEV++       ++  G    N  +NQ IEFNKL+AK Q+E R PK+EM  LS+P
Sbjct: 61  IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP 120

Query: 121 MNDIEKAMEYLKEAVKLHSGKNNASSASDPHKKDSCTKTIDSKEAARRYGKFGAPTGSVS 180
           MNDI KA+E LKEAV L   KNNA SAS  H KDSCTKTIDSKEAARRYG FGA  G VS
Sbjct: 121 MNDIGKAIECLKEAVNLDCSKNNACSAS-YHHKDSCTKTIDSKEAARRYGTFGA-LGRVS 180

Query: 181 GANVATIDCKEAARKYKGATV 195
            AN ATI+CKEAARKY GA V
Sbjct: 181 SANEATINCKEAARKYNGAEV 199

[Close]

BLAST of HG10006492 vs. NCBI nr
Match: KAG6599284.1 (putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-49
Identity = 123/216 (56.94%), Postives = 140/216 (64.81%), Query Frame = 0


Query: 1   MADFRYGFFCRPDNKKIESRPEEKSKTSHISDSKSKPARVDAGGRRQPISVLPGTRYVTT 60
           MADFRYGFFCRPDNK +E + EEK+ TSHI D K KPA VDAGGRR P  VLP  RYVTT
Sbjct: 1   MADFRYGFFCRPDNKNLEPQQEEKNTTSHIPDPKYKPAHVDAGGRRLPTVVLPRPRYVTT 60

Query: 61  TEKYTEEVNSSTSSGNFQHNH------------------------ILNQPIEFNKLIAKG 120
           TE YTEE  S++  G FQ++H                         LN+P EFN+L+ K 
Sbjct: 61  TETYTEEFYSNSRDG-FQYSHTKNSEPVKSYGLHHDKGIRHPSRPALNRPTEFNRLLVKV 120

Query: 121 QKEARQPKHEMISLSDPMNDIEKAMEYLKEAVKLHSGKNNASSASDPHKKDSCTKTIDSK 180
           + E  Q KHEM  +S PMNDIEKA+E+ KEAV L   KNNA  A D  KKD  TKTIDS 
Sbjct: 121 EMEEDQVKHEM-RISKPMNDIEKAIEFFKEAVNLPYCKNNACHAPDHPKKDGYTKTIDSN 180

Query: 181 EAARRYGKFGAPTGSVSGANVATIDCKEAARKYKGA 193
           EAARR+G FG P   V  AN ATI+CKEAARKYK +
Sbjct: 181 EAARRFGNFGVPP-PVPSANGATINCKEAARKYKAS 213

[Close]

BLAST of HG10006492 vs. NCBI nr
Match: XP_022743270.1 (uncharacterized protein LOC111294277 [Durio zibethinus] >XP_022743271.1 uncharacterized protein LOC111294277 [Durio zibethinus])

HSP 1 Score: 62.4 bits (150), Expect = 5.0e-06
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 109 SLSDPMNDIEKAMEYLKEAVKLHSG-----KNNASSASDPHKKDSCTKTIDSKEAARRYG 168
           +LS+P +DI  A+ YLKEAV   SG          +AS   K+++  +TIDSKEA RRYG
Sbjct: 174 NLSEPTSDINTAIGYLKEAVNPSSGITPPPSRYTGTASTRPKRNTYPETIDSKEAERRYG 233

Query: 169 KF---GAPTGSVSGANVATIDCKEAARKYKGATV 195
            F     PT + +     TID +EAARKY+G TV
Sbjct: 234 NFNFSSRPTDNYT----RTIDSREAARKYRGTTV 263

[Close]

BLAST of HG10006492 vs. ExPASy TrEMBL
Match: A0A0A0LG87 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G012700 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 7.2e-59
Identity = 135/202 (66.83%), Postives = 151/202 (74.75%), Query Frame = 0


Query: 1   MADFRYGFFCRPDNKKIESRPEE-KSKTSHISDSKSKPARVDAGGRRQPISVLPGTRYVT 60
           MADFRYGFF RPDNKKIES P E KSK  HISD KSKP  +DAGGR+QPI++LP TRYVT
Sbjct: 1   MADFRYGFFVRPDNKKIESNPAELKSKAGHISDPKSKPPYLDAGGRQQPIAILPRTRYVT 60

Query: 61  TTEKYTEEVNS-------STSSGNFQHNHILNQPIEFNKLIAKGQKEARQPKHEMISLSD 120
             EKYTEEV++       ++  G    +  +NQ IEFNKL+A  QKEAR PK+EM  LS+
Sbjct: 61  PIEKYTEEVHTKKYEPVKNSDKGTLNSHLAINQRIEFNKLLANVQKEARLPKYEMRLLSE 120

Query: 121 PMNDIEKAMEYLKEAVKLHSGKNNASSASDPHKKDSCTKTIDSKEAARRYGKFGAPTGSV 180
           PM DI KA+E LKE V L   KNNA +AS   +KDSCTKTIDSKEAARRYGKFGAP   V
Sbjct: 121 PMTDIGKAIECLKEVVNLDCSKNNACAAS-ARRKDSCTKTIDSKEAARRYGKFGAPV-PV 180

Query: 181 SGANVATIDCKEAARKYKGATV 195
           S ANVATIDCKEAARKY GA V
Sbjct: 181 SNANVATIDCKEAARKYNGAAV 200

[Close]

BLAST of HG10006492 vs. ExPASy TrEMBL
Match: A0A5A7VCJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001150 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.2e-58
Identity = 132/201 (65.67%), Postives = 151/201 (75.12%), Query Frame = 0


Query: 1   MADFRYGFFCRPDNKKIESRPEEKSKTSHISDSKSKPARVDAGGRRQPISVLPGTRYVTT 60
           MADFRYGFF RPDNKKIES PEEKS+  HIS+ KSKP  +DAGGR++P ++LP TRYVT 
Sbjct: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDAGGRQRPTAILPRTRYVTP 60

Query: 61  TEKYTEEVNS-------STSSGNFQHNHILNQPIEFNKLIAKGQKEARQPKHEMISLSDP 120
            EK+TEEV++       ++  G    N  +NQ IEFNKL+AK Q+E R PK+EM  LS+P
Sbjct: 61  IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP 120

Query: 121 MNDIEKAMEYLKEAVKLHSGKNNASSASDPHKKDSCTKTIDSKEAARRYGKFGAPTGSVS 180
           MNDI KA+E LKEAV L   KNNA SAS  H KDSCTKTIDSKEAARRYG FGA  G VS
Sbjct: 121 MNDIGKAIECLKEAVNLDCSKNNACSAS-YHHKDSCTKTIDSKEAARRYGTFGA-LGRVS 180

Query: 181 GANVATIDCKEAARKYKGATV 195
            AN ATI+CKEAARKY GA V
Sbjct: 181 SANEATINCKEAARKYNGAEV 199

[Close]

BLAST of HG10006492 vs. ExPASy TrEMBL
Match: E5GBR2 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 3.6e-58
Identity = 131/201 (65.17%), Postives = 150/201 (74.63%), Query Frame = 0


Query: 1   MADFRYGFFCRPDNKKIESRPEEKSKTSHISDSKSKPARVDAGGRRQPISVLPGTRYVTT 60
           MADFRYGFF RPDNKKIES PEEKS+  HIS+ KSKP  +D GGR++P ++LP TRYVT 
Sbjct: 1   MADFRYGFFVRPDNKKIESNPEEKSRAGHISNPKSKPPNLDVGGRQRPTAILPRTRYVTP 60

Query: 61  TEKYTEEVNS-------STSSGNFQHNHILNQPIEFNKLIAKGQKEARQPKHEMISLSDP 120
            EK+TEEV++       ++  G    N  +NQ IEFNKL+AK Q+E R PK+EM  LS+P
Sbjct: 61  IEKHTEEVHTKKYEPMKNSDKGTLDSNLAINQRIEFNKLLAKAQEEVRLPKYEMRLLSEP 120

Query: 121 MNDIEKAMEYLKEAVKLHSGKNNASSASDPHKKDSCTKTIDSKEAARRYGKFGAPTGSVS 180
           MNDI KA+E LKEAV L   KNNA SAS  H KDSCTKTIDSKEAARRYG FGA  G VS
Sbjct: 121 MNDIGKAIECLKEAVNLDCSKNNACSAS-YHHKDSCTKTIDSKEAARRYGTFGA-LGRVS 180

Query: 181 GANVATIDCKEAARKYKGATV 195
            AN ATI+CKEAARKY GA V
Sbjct: 181 SANEATINCKEAARKYNGAEV 199

[Close]

BLAST of HG10006492 vs. ExPASy TrEMBL
Match: A0A6P5YSZ0 (uncharacterized protein LOC111294277 OS=Durio zibethinus OX=66656 GN=LOC111294277 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 109 SLSDPMNDIEKAMEYLKEAVKLHSG-----KNNASSASDPHKKDSCTKTIDSKEAARRYG 168
           +LS+P +DI  A+ YLKEAV   SG          +AS   K+++  +TIDSKEA RRYG
Sbjct: 174 NLSEPTSDINTAIGYLKEAVNPSSGITPPPSRYTGTASTRPKRNTYPETIDSKEAERRYG 233

Query: 169 KF---GAPTGSVSGANVATIDCKEAARKYKGATV 195
            F     PT + +     TID +EAARKY+G TV
Sbjct: 234 NFNFSSRPTDNYT----RTIDSREAARKYRGTTV 263

[Close]

BLAST of HG10006492 vs. ExPASy TrEMBL
Match: A0A1R3JVS0 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13630 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.2e-06
Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 109 SLSDPMNDIEKAMEYLKEAVKLHSG-------KNNASSASDPHKKDSCTKTIDSKEAARR 168
           +L +P +DI  A+E+LKE VK  SG       + +    S   K+DS  + IDSKEAARR
Sbjct: 306 NLGNPTSDINTAVEFLKEVVKPSSGITSHQPYRYSIPVTSTGPKRDSYPEIIDSKEAARR 365

Query: 169 YGKFG-APTGSVSGANVATIDCKEAARKYKGATV 195
           YG +  A T  +      TID +EAARKY G TV
Sbjct: 366 YGNYNFAATRPMDNNYTTTIDSREAARKYGGTTV 399

The following BLAST results are available for this feature:

BLAST of HG10006492 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60838.1	1.5e-58	66.83	hypothetical protein Csa_019431 [Cucumis sativus]	[more]
KAA0063635.1	2.5e-58	65.67	hypothetical protein E6C27_scaffold329G001480 [Cucumis melo var. makuwa] >TYK183...	[more]
ADN33904.1	7.3e-58	65.17	hypothetical protein [Cucumis melo subsp. melo]	[more]
KAG6599284.1	1.3e-49	56.94	putative nucleolar protein 5-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022743270.1	5.0e-06	45.74	uncharacterized protein LOC111294277 [Durio zibethinus] >XP_022743271.1 uncharac...	[more]

BLAST of HG10006492 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG87	7.2e-59	66.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G012700 PE=4 SV=1	[more]
A0A5A7VCJ6	1.2e-58	65.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GBR2	3.6e-58	65.17	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6P5YSZ0	2.4e-06	45.74	uncharacterized protein LOC111294277 OS=Durio zibethinus OX=66656 GN=LOC11129427...	[more]
A0A1R3JVS0	3.2e-06	44.68	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_13630 PE=4 SV=1	[more]

BLAST of HG10006492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006492.1	HG10006492.1	mRNA