HG10006462 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006462
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	TMV resistance protein N-like
Location	Chr07: 18777783 .. 18778025 (-)
RNA-Seq Expression	HG10006462
Synteny	HG10006462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTTAGTAACAACTTCTTCTCTAGCATGGGGATCCATGGAGGTGCAGGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACATGATGAGGTTAATATAACTATAAGAAGCTGTGGTCTCCATGTCACTGAAGAGATCCATGGGATACAAACGGATTCCAAGTGGCCGGTGGTAAATTATGCTGATTTTTATCAACCGGAGAAATTGCCAACTTTGCAAGTGAGCCTACATCATTCCTAG

mRNA sequence

ATGTGGTTAGTAACAACTTCTTCTCTAGCATGGGGATCCATGGAGGTGCAGGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACATGATGAGGTTAATATAACTATAAGAAGCTGTGGTCTCCATGTCACTGAAGAGATCCATGGGATACAAACGGATTCCAAGTGGCCGGTGGTAAATTATGCTGATTTTTATCAACCGGAGAAATTGCCAACTTTGCAAGTGAGCCTACATCATTCCTAG

Coding sequence (CDS)

ATGTGGTTAGTAACAACTTCTTCTCTAGCATGGGGATCCATGGAGGTGCAGGATTGGAATAAAGTTTTGGTCTGGTTTGAAGCACATGATGAGGTTAATATAACTATAAGAAGCTGTGGTCTCCATGTCACTGAAGAGATCCATGGGATACAAACGGATTCCAAGTGGCCGGTGGTAAATTATGCTGATTTTTATCAACCGGAGAAATTGCCAACTTTGCAAGTGAGCCTACATCATTCCTAG

Protein sequence

MWLVTTSSLAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVNYADFYQPEKLPTLQVSLHHS

Homology

[Close]

BLAST of HG10006462 vs. NCBI nr
Match: KAA0063682.1 (TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.3e-26
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MWLVTTSSLAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVN 60
           MWLVTT SLA  SMEVQDWNKVLVWFEA DEVN+T+RSCG+HVTEE+HG+QTD  WPVV 
Sbjct: 114 MWLVTT-SLARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVT 173

Query: 61  YADFYQPEKLPTL 74
           +ADFYQPEKLP L
Sbjct: 174 FADFYQPEKLPDL 185

[Close]

BLAST of HG10006462 vs. NCBI nr
Match: TYK18345.1 (TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.3e-26
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MWLVTTSSLAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVN 60
           MWLVTT SLA  SMEVQDWNKVLVWFEA DEVN+T+RSCG+HVTEE+HG+QTD  WPVV 
Sbjct: 114 MWLVTT-SLARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVT 173

Query: 61  YADFYQPEKLPTL 74
           +ADFYQPEKLP L
Sbjct: 174 FADFYQPEKLPDL 185

[Close]

BLAST of HG10006462 vs. NCBI nr
Match: XP_008454602.1 (PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 4.0e-26
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MWLVTTSSLAWGSMEVQDWNKVLVWFE---AHDEVNITIRSCGLHVTEEIHGIQTDSKWP 60
           MWL+TT SLAWGSMEVQDWNKVLVWFE   A DEV ++IR CG+HVTEE+HGIQTD KWP
Sbjct: 706 MWLITT-SLAWGSMEVQDWNKVLVWFEVVDADDEVKVSIRRCGVHVTEELHGIQTDVKWP 765

Query: 61  VVNYADFYQPEKLPTLQV 76
           VVNYADFYQ EKL  L +
Sbjct: 766 VVNYADFYQVEKLQNLDI 782

[Close]

BLAST of HG10006462 vs. NCBI nr
Match: XP_008455151.1 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 5.8e-25
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1    MWLVTTSSLAWGSMEVQDWNKVLVWF---EAHDEVNITIRSCGLHVTEEIHGIQTDSKWP 60
            MWLVTT SLAWGSMEV DWNKVLVWF   EAH EVN TI  CG+HVTEE+HGIQ D KWP
Sbjct: 1119 MWLVTT-SLAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWP 1178

Query: 61   VVNYADFYQPEKLPTLQV 76
            +VNYADFYQ EKL +L +
Sbjct: 1179 MVNYADFYQLEKLQSLDI 1195

[Close]

BLAST of HG10006462 vs. NCBI nr
Match: XP_038877835.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 5.8e-25
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1    MWLVTTSSLAWGSMEVQDWNKVLVWFEAHD---EVNITIRSCGLHVTEEIHGIQTDSKWP 60
            MWLVTT SLAWGSMEVQDWNKVLV FE H+   EVN+TIRS G+HVTEE+HG+QTD KWP
Sbjct: 1091 MWLVTT-SLAWGSMEVQDWNKVLVRFEVHEEHVEVNVTIRSYGIHVTEELHGMQTDLKWP 1150

Query: 61   VVNYADFYQPEKLPTLQV 76
            VVNYADFYQ EKL  L +
Sbjct: 1151 VVNYADFYQMEKLQNLDI 1167

[Close]

BLAST of HG10006462 vs. ExPASy TrEMBL
Match: A0A5D3D473 (TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00600 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MWLVTTSSLAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVN 60
           MWLVTT SLA  SMEVQDWNKVLVWFEA DEVN+T+RSCG+HVTEE+HG+QTD  WPVV 
Sbjct: 114 MWLVTT-SLARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVT 173

Query: 61  YADFYQPEKLPTL 74
           +ADFYQPEKLP L
Sbjct: 174 FADFYQPEKLPDL 185

[Close]

BLAST of HG10006462 vs. ExPASy TrEMBL
Match: A0A5A7V617 (TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002010 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 59/73 (80.82%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MWLVTTSSLAWGSMEVQDWNKVLVWFEAHDEVNITIRSCGLHVTEEIHGIQTDSKWPVVN 60
           MWLVTT SLA  SMEVQDWNKVLVWFEA DEVN+T+RSCG+HVTEE+HG+QTD  WPVV 
Sbjct: 114 MWLVTT-SLARESMEVQDWNKVLVWFEAQDEVNVTMRSCGVHVTEELHGLQTDLNWPVVT 173

Query: 61  YADFYQPEKLPTL 74
           +ADFYQPEKLP L
Sbjct: 174 FADFYQPEKLPDL 185

[Close]

BLAST of HG10006462 vs. ExPASy TrEMBL
Match: A0A1S3BZ02 (LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=3656 GN=LOC103494972 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 60/78 (76.92%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MWLVTTSSLAWGSMEVQDWNKVLVWFE---AHDEVNITIRSCGLHVTEEIHGIQTDSKWP 60
           MWL+TT SLAWGSMEVQDWNKVLVWFE   A DEV ++IR CG+HVTEE+HGIQTD KWP
Sbjct: 706 MWLITT-SLAWGSMEVQDWNKVLVWFEVVDADDEVKVSIRRCGVHVTEELHGIQTDVKWP 765

Query: 61  VVNYADFYQPEKLPTLQV 76
           VVNYADFYQ EKL  L +
Sbjct: 766 VVNYADFYQVEKLQNLDI 782

[Close]

BLAST of HG10006462 vs. ExPASy TrEMBL
Match: A0A1S3C088 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1    MWLVTTSSLAWGSMEVQDWNKVLVWF---EAHDEVNITIRSCGLHVTEEIHGIQTDSKWP 60
            MWLVTT SLAWGSMEV DWNKVLVWF   EAH EVN TI  CG+HVTEE+HGIQ D KWP
Sbjct: 1119 MWLVTT-SLAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWP 1178

Query: 61   VVNYADFYQPEKLPTLQV 76
            +VNYADFYQ EKL +L +
Sbjct: 1179 MVNYADFYQLEKLQSLDI 1195

[Close]

BLAST of HG10006462 vs. ExPASy TrEMBL
Match: A0A1S3C093 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495388 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1    MWLVTTSSLAWGSMEVQDWNKVLVWF---EAHDEVNITIRSCGLHVTEEIHGIQTDSKWP 60
            MWLVTT SLAWGSMEV DWNKVLVWF   EAH EVN TI  CG+HVTEE+HGIQ D KWP
Sbjct: 932  MWLVTT-SLAWGSMEVNDWNKVLVWFEVHEAHSEVNATITRCGVHVTEELHGIQMDVKWP 991

Query: 61   VVNYADFYQPEKLPTLQV 76
            +VNYADFYQ EKL +L +
Sbjct: 992  MVNYADFYQLEKLQSLDI 1008

The following BLAST results are available for this feature:

BLAST of HG10006462 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063682.1	2.3e-26	80.82	TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa]	[more]
TYK18345.1	2.3e-26	80.82	TMV resistance protein N-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_008454602.1	4.0e-26	76.92	PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis me...	[more]
XP_008455151.1	5.8e-25	75.64	PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo]	[more]
XP_038877835.1	5.8e-25	76.92	LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida]	[more]

BLAST of HG10006462 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D473	1.1e-26	80.82	TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V617	1.1e-26	80.82	TMV resistance protein N-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BZ02	1.9e-26	76.92	LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=365...	[more]
A0A1S3C088	2.8e-25	75.64	TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495388...	[more]
A0A1S3C093	2.8e-25	75.64	TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495388...	[more]

BLAST of HG10006462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006462.1	HG10006462.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity