HG10006439 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006439
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Cyclin
Location	Chr07: 18588689 .. 18589818 (+)
RNA-Seq Expression	HG10006439
Synteny	HG10006439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCATTGGACAATATATCGATCGCATCTTGAAGTACACATGTTGTGGCACTTCCTGCTTAGTTGTTGCCTACATATACATTGAAAGGTATCTTCAAAAGATGGATGCTTACCTAACTAATTTGAACATCCACCGCCTTCTGATCACCAGCATCATGGTTGCAGCGAAGTTTATCGATGCCGGGTAAGTTCTAATGTCGCTTAGTTACCGTGGCCCTGTTGTAATTCACTTAACATGAAAAGATTTCGAGCTTGGTTAATATTCTGCAGTTTAGTTTTTTCAGTTCACACCACACTAACTTTATTTCAGTTGCCTTCCCGTGCATCCATTGAACTGAGATCATGAGGAGGAATCCATAAGTTCAAGTTTATATAGCTGACATTTTTTTCAGTGAAAAATGAGCTAAATATATGATTCAATCCCTCATGTTTGGTTCATTTTTCAAATTTGTCCATAATCTAGAGGTTTCTGATTTTCTGTTCCTTTAACAAGTCTTCGTTTTATCACAAAAATGTTAAAATTTATAGATGAAGAACTGATGTCGAAATACACTCACGCTCACACTCACACGGCTTAGGTATACATTGTTCTTCTTTTAAAGTTAAATAGTGCTAAGTACTTGATTGAAACAATTCCATGTATAAAAGACAAAATTGAAAATTTTAAATGATTCTATACAAAATGTAATAGTGACTCAAACACTGCTTAGAAAGATATCAACAACCAGAGACCTTTTGTTCGATGCTGCTATATCGATATCGTGCATCTGATCTGTCATATTTCGAGATCCCTGAAAATTTTCTTCCAATTTCTTGGATGTTATAAAAATACTTTTTATGTATACACAACTTAATGTGTTAAGATGCTATGCAATGCAGATGCTATAACAATACTTTTTATGCCAAAGTTGGAGGAGTGAGCACAAAAGAAATGAACAGCTTGGAGATAGAATTTCTGTTCAATTTGGACTTCAGACTTCATGTCACTGCTGATGTTTTCAGTACTCACTGTTTGCAGCTCCAAAAGGAAGTTCTTGGGGTGGAGAATCAAGCCGATCGTCGAGCCGGTAACAAAGCTCGAACTAAATGTTTACCTCAAATTACAGGCTACACTTGCAGTGCCATTTGA

mRNA sequence

ATGAGCATTGGACAATATATCGATCGCATCTTGAAGTACACATGTTGTGGCACTTCCTGCTTAGTTGTTGCCTACATATACATTGAAAGGTATCTTCAAAAGATGGATGCTTACCTAACTAATTTGAACATCCACCGCCTTCTGATCACCAGCATCATGGTTGCAGCGAAGTTTATCGATGCCGGATGCTATAACAATACTTTTTATGCCAAAGTTGGAGGAGTGAGCACAAAAGAAATGAACAGCTTGGAGATAGAATTTCTGTTCAATTTGGACTTCAGACTTCATGTCACTGCTGATGTTTTCAGTACTCACTGTTTGCAGCTCCAAAAGGAAGTTCTTGGGGTGGAGAATCAAGCCGATCGTCGAGCCGGTAACAAAGCTCGAACTAAATGTTTACCTCAAATTACAGGCTACACTTGCAGTGCCATTTGA

Coding sequence (CDS)

ATGAGCATTGGACAATATATCGATCGCATCTTGAAGTACACATGTTGTGGCACTTCCTGCTTAGTTGTTGCCTACATATACATTGAAAGGTATCTTCAAAAGATGGATGCTTACCTAACTAATTTGAACATCCACCGCCTTCTGATCACCAGCATCATGGTTGCAGCGAAGTTTATCGATGCCGGATGCTATAACAATACTTTTTATGCCAAAGTTGGAGGAGTGAGCACAAAAGAAATGAACAGCTTGGAGATAGAATTTCTGTTCAATTTGGACTTCAGACTTCATGTCACTGCTGATGTTTTCAGTACTCACTGTTTGCAGCTCCAAAAGGAAGTTCTTGGGGTGGAGAATCAAGCCGATCGTCGAGCCGGTAACAAAGCTCGAACTAAATGTTTACCTCAAATTACAGGCTACACTTGCAGTGCCATTTGA

Protein sequence

MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFIDAGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQADRRAGNKARTKCLPQITGYTCSAI

Homology

[Close]

BLAST of HG10006439 vs. NCBI nr
Match: XP_038886918.1 (cyclin-P3-1 [Benincasa hispida] >XP_038886919.1 cyclin-P3-1 [Benincasa hispida] >XP_038886920.1 cyclin-P3-1 [Benincasa hispida] >XP_038886922.1 cyclin-P3-1 [Benincasa hispida] >XP_038886923.1 cyclin-P3-1 [Benincasa hispida])

HSP 1 Score: 278.9 bits (712), Expect = 2.5e-71
Identity = 135/144 (93.75%), Postives = 136/144 (94.44%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           M IGQYIDRILKYTCCGT CLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID
Sbjct: 73  MGIGQYIDRILKYTCCGTPCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTAD+FS HCLQLQKE LG ENQ 
Sbjct: 133 AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADIFSNHCLQLQKEALGGENQV 192

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           D RAGNK RTKCLPQITGYTCSAI
Sbjct: 193 DHRAGNKTRTKCLPQITGYTCSAI 216

[Close]

BLAST of HG10006439 vs. NCBI nr
Match: XP_004139180.1 (cyclin-P3-1 isoform X1 [Cucumis sativus] >XP_011648813.1 cyclin-P3-1 isoform X1 [Cucumis sativus] >XP_011648815.1 cyclin-P3-1 isoform X1 [Cucumis sativus] >XP_011648816.1 cyclin-P3-1 isoform X1 [Cucumis sativus] >XP_031737277.1 cyclin-P3-1 isoform X1 [Cucumis sativus] >KGN60902.1 hypothetical protein Csa_023421 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-71
Identity = 134/144 (93.06%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           M IGQYIDRILKYTCCGT+CLVVAYIYIERYLQK D YLT+LN+HRLLITSIMVAAKFID
Sbjct: 73  MGIGQYIDRILKYTCCGTACLVVAYIYIERYLQKTDVYLTSLNVHRLLITSIMVAAKFID 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLG ENQ 
Sbjct: 133 AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGAENQV 192

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           +RR GNKARTKCLPQITGYTCSAI
Sbjct: 193 ERRPGNKARTKCLPQITGYTCSAI 216

[Close]

BLAST of HG10006439 vs. NCBI nr
Match: XP_008454704.1 (PREDICTED: cyclin-P3-1 [Cucumis melo] >XP_008454712.1 PREDICTED: cyclin-P3-1 [Cucumis melo] >XP_008454721.1 PREDICTED: cyclin-P3-1 [Cucumis melo] >XP_008454727.1 PREDICTED: cyclin-P3-1 [Cucumis melo] >XP_008454735.1 PREDICTED: cyclin-P3-1 [Cucumis melo] >XP_016901631.1 PREDICTED: cyclin-P3-1 [Cucumis melo] >ABR67416.1 cyclin-dependent kinase [Cucumis melo subsp. melo])

HSP 1 Score: 277.3 bits (708), Expect = 7.3e-71
Identity = 133/144 (92.36%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           M IGQYIDRILKYTCCGT+CL+VAYIYIERYLQKMD YLT+LN+HRLLITSIMVAAKF D
Sbjct: 73  MGIGQYIDRILKYTCCGTACLIVAYIYIERYLQKMDVYLTSLNVHRLLITSIMVAAKFTD 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLG ENQ 
Sbjct: 133 AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGGENQV 192

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           +RR GNKARTKCLPQITGYTCSAI
Sbjct: 193 ERRPGNKARTKCLPQITGYTCSAI 216

[Close]

BLAST of HG10006439 vs. NCBI nr
Match: KAA0047963.1 (cyclin-P3-1 [Cucumis melo var. makuwa] >TYK18312.1 cyclin-P3-1 [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 7.3e-71
Identity = 133/144 (92.36%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           M IGQYIDRILKYTCCGT+CL+VAYIYIERYLQKMD YLT+LN+HRLLITSIMVAAKF D
Sbjct: 70  MGIGQYIDRILKYTCCGTACLIVAYIYIERYLQKMDVYLTSLNVHRLLITSIMVAAKFTD 129

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLG ENQ 
Sbjct: 130 AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGGENQV 189

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           +RR GNKARTKCLPQITGYTCSAI
Sbjct: 190 ERRPGNKARTKCLPQITGYTCSAI 213

[Close]

BLAST of HG10006439 vs. NCBI nr
Match: XP_022946012.1 (cyclin-P3-1-like [Cucurbita moschata] >XP_022946013.1 cyclin-P3-1-like [Cucurbita moschata] >XP_023521765.1 cyclin-P3-1-like [Cucurbita pepo subsp. pepo] >XP_023545675.1 cyclin-P3-1 [Cucurbita pepo subsp. pepo] >XP_023545676.1 cyclin-P3-1 [Cucurbita pepo subsp. pepo] >KAG7030248.1 Cyclin-P3-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 123/144 (85.42%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           MS GQYIDRI KYTCCGT CLVVAYIYIERYLQKM AYLT+LN+HRLLITSIMVAAKF D
Sbjct: 73  MSTGQYIDRISKYTCCGTPCLVVAYIYIERYLQKMGAYLTSLNVHRLLITSIMVAAKFND 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNN FYAKVGGVSTKEMNS+EIE LFNLDFRLHVTADVF  HCLQLQKE LG ENQ 
Sbjct: 133 AGCYNNAFYAKVGGVSTKEMNSMEIELLFNLDFRLHVTADVFRAHCLQLQKEGLG-ENQI 192

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           DRR GNK RT+CLPQI  YTC AI
Sbjct: 193 DRRPGNKTRTRCLPQIASYTCRAI 215

[Close]

BLAST of HG10006439 vs. ExPASy Swiss-Prot
Match: Q75HV0 (Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.5e-34
Identity = 72/156 (46.15%), Postives = 100/156 (64.10%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           +SI  Y +RI KY+ C  SC V+A IY+ERYLQ+   Y+T+L++HRLLITS++VAAKF D
Sbjct: 77  LSIKLYAERIFKYSECSPSCFVLALIYMERYLQQPHVYMTSLSVHRLLITSVVVAAKFTD 136

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVL------ 120
              +NN FYA+VGG+ST EMN LE++ LFNLDFRL V  + F ++CLQL+KE +      
Sbjct: 137 DAFFNNAFYARVGGISTVEMNRLELDLLFNLDFRLKVDLETFGSYCLQLEKETMVLVIDR 196

Query: 121 ------GVENQADRRAGNKARTKCLPQITGYTCSAI 145
                 GV +  D    +     C  ++  Y+  A+
Sbjct: 197 PIQQVHGVNSTKDLSRNSSIDESCKSELMRYSSQAL 232

[Close]

BLAST of HG10006439 vs. ExPASy Swiss-Prot
Match: Q8LB60 (Cyclin-U3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU3-1 PE=1 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 9.1e-32
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           +SI  Y+DRI KY+CC  SC V+A+IYI+ +L K  A L  LN+HRL+IT++M+AAK  D
Sbjct: 73  ISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRALLKPLNVHRLIITTVMLAAKVFD 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKE 113
              +NN +YA+VGGV+T+E+N LE+E LF LDF+L V    F THC QL+K+
Sbjct: 133 DRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQ 184

[Close]

BLAST of HG10006439 vs. ExPASy Swiss-Prot
Match: Q9LY16 (Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.5e-30
Identity = 58/115 (50.43%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAY-LTNLNIHRLLITSIMVAAKFI 60
           +SI  Y++RI KY  C  SC +VAYIY++R++QK     + + N+HRL+ITS++V+AKF+
Sbjct: 62  ISIRSYMERIFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFM 121

Query: 61  DAGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVL 115
           D  CYNN FYAKVGG++T+EMN LE++FLF + F+L+VT   ++ +C  LQ+E++
Sbjct: 122 DDLCYNNAFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMV 176

[Close]

BLAST of HG10006439 vs. ExPASy Swiss-Prot
Match: O80513 (Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.2e-29
Identity = 60/114 (52.63%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAY-LTNLNIHRLLITSIMVAAKFI 60
           ++I  Y++RI KY  C  SC VVAY+Y++R+  +  +  + + N+HRLLITS+MVAAKF+
Sbjct: 52  ITIQSYLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFL 111

Query: 61  DAGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEV 114
           D   YNN +YAKVGG+STKEMN LE++FLF L F L+VT + F+ +   LQKE+
Sbjct: 112 DDLYYNNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEM 165

[Close]

BLAST of HG10006439 vs. ExPASy Swiss-Prot
Match: Q7XC35 (Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-28
Identity = 61/135 (45.19%), Postives = 91/135 (67.41%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAY-LTNLNIHRLLITSIMVAAKFI 60
           +SIG Y++RI ++  C  SC VVAYIY++R+L++  A  + + N+HRLLITS++ A KF+
Sbjct: 55  ISIGGYLERIFRFANCSPSCYVVAYIYLDRFLRRRPALAVDSFNVHRLLITSVLTAVKFV 114

Query: 61  DAGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQ 120
           D  CYNN ++A+VGG+S  EMN LE++FLF + F L+VT   F+++C  LQ E+  +E  
Sbjct: 115 DDICYNNAYFARVGGISLMEMNYLEVDFLFGIAFDLNVTPAAFASYCAVLQSEMTYLEQP 174

Query: 121 ADRRAGNKARTKCLP 135
               A +  R  C P
Sbjct: 175 P---AVDLPRLHCCP 186

[Close]

BLAST of HG10006439 vs. ExPASy TrEMBL
Match: A0A0A0LJL5 (Cyclin OS=Cucumis sativus OX=3659 GN=Csa_2G021730 PE=3 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 1.6e-71
Identity = 134/144 (93.06%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           M IGQYIDRILKYTCCGT+CLVVAYIYIERYLQK D YLT+LN+HRLLITSIMVAAKFID
Sbjct: 73  MGIGQYIDRILKYTCCGTACLVVAYIYIERYLQKTDVYLTSLNVHRLLITSIMVAAKFID 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLG ENQ 
Sbjct: 133 AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGAENQV 192

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           +RR GNKARTKCLPQITGYTCSAI
Sbjct: 193 ERRPGNKARTKCLPQITGYTCSAI 216

[Close]

BLAST of HG10006439 vs. ExPASy TrEMBL
Match: A0A1S3C004 (cyclin-P3-1 OS=Cucumis melo OX=3656 GN=LOC103495057 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-71
Identity = 133/144 (92.36%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           M IGQYIDRILKYTCCGT+CL+VAYIYIERYLQKMD YLT+LN+HRLLITSIMVAAKF D
Sbjct: 73  MGIGQYIDRILKYTCCGTACLIVAYIYIERYLQKMDVYLTSLNVHRLLITSIMVAAKFTD 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLG ENQ 
Sbjct: 133 AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGGENQV 192

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           +RR GNKARTKCLPQITGYTCSAI
Sbjct: 193 ERRPGNKARTKCLPQITGYTCSAI 216

[Close]

BLAST of HG10006439 vs. ExPASy TrEMBL
Match: A0A5A7TWJ7 (Cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00220 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-71
Identity = 133/144 (92.36%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           M IGQYIDRILKYTCCGT+CL+VAYIYIERYLQKMD YLT+LN+HRLLITSIMVAAKF D
Sbjct: 70  MGIGQYIDRILKYTCCGTACLIVAYIYIERYLQKMDVYLTSLNVHRLLITSIMVAAKFTD 129

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLG ENQ 
Sbjct: 130 AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGGENQV 189

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           +RR GNKARTKCLPQITGYTCSAI
Sbjct: 190 ERRPGNKARTKCLPQITGYTCSAI 213

[Close]

BLAST of HG10006439 vs. ExPASy TrEMBL
Match: A6YTD1 (Cyclin-dependent kinase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.6e-71
Identity = 133/144 (92.36%), Postives = 138/144 (95.83%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           M IGQYIDRILKYTCCGT+CL+VAYIYIERYLQKMD YLT+LN+HRLLITSIMVAAKF D
Sbjct: 73  MGIGQYIDRILKYTCCGTACLIVAYIYIERYLQKMDVYLTSLNVHRLLITSIMVAAKFTD 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLG ENQ 
Sbjct: 133 AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGGENQV 192

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           +RR GNKARTKCLPQITGYTCSAI
Sbjct: 193 ERRPGNKARTKCLPQITGYTCSAI 216

[Close]

BLAST of HG10006439 vs. ExPASy TrEMBL
Match: A0A6J1G2L7 (Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111450231 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.9e-63
Identity = 123/144 (85.42%), Postives = 127/144 (88.19%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           MS GQYIDRI KYTCCGT CLVVAYIYIERYLQKM AYLT+LN+HRLLITSIMVAAKF D
Sbjct: 73  MSTGQYIDRISKYTCCGTPCLVVAYIYIERYLQKMGAYLTSLNVHRLLITSIMVAAKFND 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLGVENQA 120
           AGCYNN FYAKVGGVSTKEMNS+EIE LFNLDFRLHVTADVF  HCLQLQKE LG ENQ 
Sbjct: 133 AGCYNNAFYAKVGGVSTKEMNSMEIELLFNLDFRLHVTADVFRAHCLQLQKEGLG-ENQI 192

Query: 121 DRRAGNKARTKCLPQITGYTCSAI 145
           DRR GNK RT+CLPQI  YTC AI
Sbjct: 193 DRRPGNKTRTRCLPQIASYTCRAI 215

[Close]

BLAST of HG10006439 vs. TAIR 10
Match: AT3G63120.1 (cyclin p1;1 )

HSP 1 Score: 137.9 bits (346), Expect = 6.5e-33
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAYLTNLNIHRLLITSIMVAAKFID 60
           +SI  Y+DRI KY+CC  SC V+A+IYI+ +L K  A L  LN+HRL+IT++M+AAK  D
Sbjct: 73  ISIAHYLDRIFKYSCCSPSCFVIAHIYIDHFLHKTRALLKPLNVHRLIITTVMLAAKVFD 132

Query: 61  AGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKE 113
              +NN +YA+VGGV+T+E+N LE+E LF LDF+L V    F THC QL+K+
Sbjct: 133 DRYFNNAYYARVGGVTTRELNRLEMELLFTLDFKLQVDPQTFHTHCCQLEKQ 184

[Close]

BLAST of HG10006439 vs. TAIR 10
Match: AT3G05327.1 (Cyclin family protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-32
Identity = 67/137 (48.91%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDA-----YLTNLNIHRLLITSIMVA 60
           +SI +Y +RI +Y  C   C V A+ YI RYLQ+ +A      LT+LN+HRLLITS++VA
Sbjct: 73  LSIYRYTERIHRYAQCSPVCFVAAFAYILRYLQRPEATSTARRLTSLNVHRLLITSLLVA 132

Query: 61  AKFIDAGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVLG 120
           AKF++  CYNN +YAK+GGVST+EMN LE  FL ++DFRL++T + F  HCL LQKE + 
Sbjct: 133 AKFLERQCYNNAYYAKIGGVSTEEMNRLERTFLVDVDFRLYITTETFEKHCLMLQKETVP 192

Query: 121 VENQADRRAGNKARTKC 133
            +++  R    +    C
Sbjct: 193 CDSRKLRTVLGEIACSC 209

[Close]

BLAST of HG10006439 vs. TAIR 10
Match: AT5G07450.1 (cyclin p4;3 )

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-31
Identity = 58/115 (50.43%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAY-LTNLNIHRLLITSIMVAAKFI 60
           +SI  Y++RI KY  C  SC +VAYIY++R++QK     + + N+HRL+ITS++V+AKF+
Sbjct: 62  ISIRSYMERIFKYADCSDSCYIVAYIYLDRFIQKQPLLPIDSSNVHRLIITSVLVSAKFM 121

Query: 61  DAGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEVL 115
           D  CYNN FYAKVGG++T+EMN LE++FLF + F+L+VT   ++ +C  LQ+E++
Sbjct: 122 DDLCYNNAFYAKVGGITTEEMNLLELDFLFGIGFQLNVTISTYNDYCSSLQREMV 176

[Close]

BLAST of HG10006439 vs. TAIR 10
Match: AT2G44740.1 (cyclin p4;1 )

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-30
Identity = 60/114 (52.63%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAY-LTNLNIHRLLITSIMVAAKFI 60
           ++I  Y++RI KY  C  SC VVAY+Y++R+  +  +  + + N+HRLLITS+MVAAKF+
Sbjct: 52  ITIQSYLERIFKYANCSPSCFVVAYVYLDRFTHRQPSLPINSFNVHRLLITSVMVAAKFL 111

Query: 61  DAGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEV 114
           D   YNN +YAKVGG+STKEMN LE++FLF L F L+VT + F+ +   LQKE+
Sbjct: 112 DDLYYNNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAYFSYLQKEM 165

[Close]

BLAST of HG10006439 vs. TAIR 10
Match: AT5G61650.1 (CYCLIN P4;2 )

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 55/114 (48.25%), Postives = 84/114 (73.68%), Query Frame = 0


Query: 1   MSIGQYIDRILKYTCCGTSCLVVAYIYIERYLQKMDAY-LTNLNIHRLLITSIMVAAKFI 60
           +SI  Y++RI +Y  C  SC +VAYIY++R+++K     + + N+HRL+ITS++V+AKF+
Sbjct: 60  ISIRSYLERIFEYANCSYSCYIVAYIYLDRFVKKQPFLPINSFNVHRLIITSVLVSAKFM 119

Query: 61  DAGCYNNTFYAKVGGVSTKEMNSLEIEFLFNLDFRLHVTADVFSTHCLQLQKEV 114
           D   YNN +YAKVGG+S +EMN LE++FLF + F L+VT   F+ +C  LQ+E+
Sbjct: 120 DDLSYNNEYYAKVGGISREEMNMLELDFLFGIGFELNVTVSTFNNYCCFLQREM 173

The following BLAST results are available for this feature:

BLAST of HG10006439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886918.1	2.5e-71	93.75	cyclin-P3-1 [Benincasa hispida] >XP_038886919.1 cyclin-P3-1 [Benincasa hispida] ...	[more]
XP_004139180.1	3.3e-71	93.06	cyclin-P3-1 isoform X1 [Cucumis sativus] >XP_011648813.1 cyclin-P3-1 isoform X1 ...	[more]
XP_008454704.1	7.3e-71	92.36	PREDICTED: cyclin-P3-1 [Cucumis melo] >XP_008454712.1 PREDICTED: cyclin-P3-1 [Cu...	[more]
KAA0047963.1	7.3e-71	92.36	cyclin-P3-1 [Cucumis melo var. makuwa] >TYK18312.1 cyclin-P3-1 [Cucumis melo var...	[more]
XP_022946012.1	1.6e-62	85.42	cyclin-P3-1-like [Cucurbita moschata] >XP_022946013.1 cyclin-P3-1-like [Cucurbit...	[more]

BLAST of HG10006439 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q75HV0	7.5e-34	46.15	Cyclin-P3-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP3-1 PE=3 SV=1	[more]
Q8LB60	9.1e-32	54.46	Cyclin-U3-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU3-1 PE=1 SV=2	[more]
Q9LY16	6.5e-30	50.43	Cyclin-U4-2 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-2 PE=1 SV=1	[more]
O80513	7.2e-29	52.63	Cyclin-U4-1 OS=Arabidopsis thaliana OX=3702 GN=CYCU4-1 PE=1 SV=1	[more]
Q7XC35	4.7e-28	45.19	Cyclin-P4-1 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCP4-1 PE=2 SV=1	[more]

BLAST of HG10006439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJL5	1.6e-71	93.06	Cyclin OS=Cucumis sativus OX=3659 GN=Csa_2G021730 PE=3 SV=1	[more]
A0A1S3C004	3.6e-71	92.36	cyclin-P3-1 OS=Cucumis melo OX=3656 GN=LOC103495057 PE=3 SV=1	[more]
A0A5A7TWJ7	3.6e-71	92.36	Cyclin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00220 PE=3 SV...	[more]
A6YTD1	3.6e-71	92.36	Cyclin-dependent kinase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A6J1G2L7	7.9e-63	85.42	Cyclin OS=Cucurbita moschata OX=3662 GN=LOC111450231 PE=3 SV=1	[more]

BLAST of HG10006439 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63120.1	6.5e-33	54.46	cyclin p1;1	[more]
AT3G05327.1	1.1e-32	48.91	Cyclin family protein	[more]
AT5G07450.1	4.6e-31	50.43	cyclin p4;3	[more]
AT2G44740.1	5.1e-30	52.63	cyclin p4;1	[more]
AT5G61650.1	1.6e-28	48.25	CYCLIN P4;2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 1..140 e-value: 2.2E-41 score: 143.7
None	No IPR available	PANTHER	PTHR15615	UNCHARACTERIZED	coord: 1..128
None	No IPR available	PANTHER	PTHR15615:SF80	CYCLIN	coord: 1..128
IPR013922	Cyclin PHO80-like	PFAM	PF08613	Cyclin	coord: 2..95 e-value: 4.3E-29 score: 102.0
IPR012389	Cyclin P/U	PIRSF	PIRSF027110	PREG	coord: 1..137 e-value: 4.3E-54 score: 181.4
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 7..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006439.1	HG10006439.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000079	regulation of cyclin-dependent protein serine/threonine kinase activity
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0019901	protein kinase binding