HG10006427 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10006427
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTMV resistance protein N-like
LocationChr07: 18481693 .. 18481962 (+)
RNA-Seq ExpressionHG10006427
SyntenyHG10006427
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTGATAGTACTTTATCCTCATAGAGATTTTGACCCAAAAATTTGGAATGATATTATGGAGACATCACCGGAGATTGATCTACGTCAACCAAGTTTTAGGATCAATTCAAGGGAATTGGACTACAATAATGAAGATGATGAGGATGATTGTACTTCTTCTGGGGAAAGTATTAGGAAGAAAGTTACGGTTTCATTTGAGTTGCGTTTCAATTTTTATGAAGTGAGTATAAATAGATGTGGTGTTCATGTTATCATGGAGGAATGA

mRNA sequence

ATGTGGTTGATAGTACTTTATCCTCATAGAGATTTTGACCCAAAAATTTGGAATGATATTATGGAGACATCACCGGAGATTGATCTACGTCAACCAAGTTTTAGGATCAATTCAAGGGAATTGGACTACAATAATGAAGATGATGAGGATGATTGTACTTCTTCTGGGGAAAGTATTAGGAAGAAAGTTACGGTTTCATTTGAGTTGCGTTTCAATTTTTATGAAGTGAGTATAAATAGATGTGGTGTTCATGTTATCATGGAGGAATGA

Coding sequence (CDS)

ATGTGGTTGATAGTACTTTATCCTCATAGAGATTTTGACCCAAAAATTTGGAATGATATTATGGAGACATCACCGGAGATTGATCTACGTCAACCAAGTTTTAGGATCAATTCAAGGGAATTGGACTACAATAATGAAGATGATGAGGATGATTGTACTTCTTCTGGGGAAAGTATTAGGAAGAAAGTTACGGTTTCATTTGAGTTGCGTTTCAATTTTTATGAAGTGAGTATAAATAGATGTGGTGTTCATGTTATCATGGAGGAATGA

Protein sequence

MWLIVLYPHRDFDPKIWNDIMETSPEIDLRQPSFRINSRELDYNNEDDEDDCTSSGESIRKKVTVSFELRFNFYEVSINRCGVHVIMEE
Homology
BLAST of HG10006427 vs. NCBI nr
Match: XP_038876369.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-13
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 1   MWLIVLYPHRDFDPKIWNDIMETSPEIDLRQPSFRINSRELDYNNEDDEDDCTSSGESIR 60
           MWLIVL PHRDF  + W+D+ME SPEID   P F  NS E+D N  +  DD    G SI 
Sbjct: 765 MWLIVLNPHRDF-YQDWDDLMEKSPEIDPSMPCFGSNSMEMDDNIPN--DDWNYVGRSIW 824

Query: 61  KKVTVSFELRFNFYE--VSINRCGVHVIMEE 90
           KK TVSFEL   F +  +SI  CGVHVIMEE
Sbjct: 825 KKFTVSFELNPMFTDTIISITSCGVHVIMEE 852

BLAST of HG10006427 vs. NCBI nr
Match: XP_031737216.1 (TMV resistance protein N isoform X3 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 1   MWLIVLYPHRDFDPKIWNDIMETSPE-IDLRQPSFRINSRELDYNNEDDEDDCTSS-GES 60
           MWL+VLYPH DF P    DI++ S E  +L QPSF INS   D NN + +DD  +  GES
Sbjct: 629 MWLLVLYPHIDF-PLNSEDIVKRSQEYFNLHQPSFGINSMGRDNNNCNVDDDRRNHFGES 688

Query: 61  IRKKVTVSFEL--RFNFYEVSINRCGVHVIMEE 90
           I +K TVSF +  +F   +VSI RCGVHVIMEE
Sbjct: 689 IWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 720

BLAST of HG10006427 vs. NCBI nr
Match: XP_011648801.1 (TMV resistance protein N isoform X2 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-11
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 1   MWLIVLYPHRDFDPKIWNDIMETSPE-IDLRQPSFRINSRELDYNNEDDEDDCTSS-GES 60
           MWL+VLYPH DF P    DI++ S E  +L QPSF INS   D NN + +DD  +  GES
Sbjct: 724 MWLLVLYPHIDF-PLNSEDIVKRSQEYFNLHQPSFGINSMGRDNNNCNVDDDRRNHFGES 783

Query: 61  IRKKVTVSFEL--RFNFYEVSINRCGVHVIMEE 90
           I +K TVSF +  +F   +VSI RCGVHVIMEE
Sbjct: 784 IWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 815

BLAST of HG10006427 vs. NCBI nr
Match: XP_008465653.2 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 1   MWLIVLYPHRDFDPKIWNDIMETSPEIDLRQPSFRI-NSRELDYNNEDDEDDCTSS-GES 60
           MWL+VLYPH DF P   +DI++ S EI+L QPSF I NS   D NN + +DD  +  GES
Sbjct: 393 MWLLVLYPHIDF-PLNSDDIIKRSQEINLHQPSFGISNSMGRDNNNCNVDDDRRNHFGES 452

Query: 61  IRKKVTVSFEL--RFNFYEVSINRCGVHVIMEE 90
              K TVSF +  ++   EVSI RCGVHVIMEE
Sbjct: 453 TWSKFTVSFGVNSKYKDSEVSIKRCGVHVIMEE 484

BLAST of HG10006427 vs. NCBI nr
Match: XP_008455000.2 (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 5.3e-11
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 1   MWLIVLYPHRDFDPKIWNDIMETSPEIDLRQPSFRINSRELDYNNEDDEDDCTSS--GES 60
           MWL+VLYPH +F     +DI+  S EI+L QPSF INS   D NN + +DD   +  GES
Sbjct: 891 MWLLVLYPHINFRLNS-DDIINRSQEINLHQPSFGINSIGRDNNNCNVDDDYRRNHIGES 950

Query: 61  IRKKVTVSFEL--RFNFYEVSINRCGVHVIMEE 90
           I +K TVSF +  +F   E+SI  CGVHVIMEE
Sbjct: 951 IWRKFTVSFGVTSKFKDSELSIKTCGVHVIMEE 982

BLAST of HG10006427 vs. ExPASy TrEMBL
Match: A0A0A0LFP7 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021510 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 1    MWLIVLYPHRDFDPKIWNDIMETSPE-IDLRQPSFRINSRELDYNNEDDEDDCTSS-GES 60
            MWL+VLYPH DF P    DI++ S E  +L QPSF INS   D NN + +DD  +  GES
Sbjct: 960  MWLLVLYPHIDF-PLNSEDIVKRSQEYFNLHQPSFGINSMGRDNNNCNVDDDRRNHFGES 1019

Query: 61   IRKKVTVSFEL--RFNFYEVSINRCGVHVIMEE 90
            I +K TVSF +  +F   +VSI RCGVHVIMEE
Sbjct: 1020 IWRKFTVSFGVNSKFKDSQVSIKRCGVHVIMEE 1051

BLAST of HG10006427 vs. ExPASy TrEMBL
Match: A0A1S3CPD4 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103503294 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 0

Query: 1   MWLIVLYPHRDFDPKIWNDIMETSPEIDLRQPSFRI-NSRELDYNNEDDEDDCTSS-GES 60
           MWL+VLYPH DF P   +DI++ S EI+L QPSF I NS   D NN + +DD  +  GES
Sbjct: 393 MWLLVLYPHIDF-PLNSDDIIKRSQEINLHQPSFGISNSMGRDNNNCNVDDDRRNHFGES 452

Query: 61  IRKKVTVSFEL--RFNFYEVSINRCGVHVIMEE 90
              K TVSF +  ++   EVSI RCGVHVIMEE
Sbjct: 453 TWSKFTVSFGVNSKYKDSEVSIKRCGVHVIMEE 484

BLAST of HG10006427 vs. ExPASy TrEMBL
Match: D9I8I6 (TIR-CC-NBS-AAA+ATPase class resistance protein OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 47/89 (52.81%), Postives = 53/89 (59.55%), Query Frame = 0

Query: 2   WLIVLYPHRDFDPKIWNDIMETSPEIDLRQPSFRINSRELDYNNEDDEDDCTSSGESIRK 61
           W IVL PHRDF    W+D+ME SPE DL Q  F INS E+D N  +D+    S G SI K
Sbjct: 905 WFIVLNPHRDFSLDDWDDMMERSPETDLSQLCFGINSMEMDRNRSNDK--WNSIGGSIWK 964

Query: 62  KVTVSFELR--FNFYEVSINRCGVHVIME 89
             TV FE R       +SI  CGVHVIME
Sbjct: 965 NFTVLFEPRPLSPDTTISIKGCGVHVIME 991

BLAST of HG10006427 vs. ExPASy TrEMBL
Match: A0A1S4DZW3 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495278 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 1    MWLIVLYPHRDFDPKIWNDIMETSPEIDLRQPSFRINSRELDYNNEDDEDDCTSS--GES 60
            MWL+VLYPH +F     +DI+  S EI+L QPSF INS   D NN + +DD   +  GES
Sbjct: 994  MWLLVLYPHINFRLNS-DDIINRSQEINLHQPSFGINSIGRDNNNCNVDDDYRRNHIGES 1053

Query: 61   IRKKVTVSFEL--RFNFYEVSINRCGVHVIMEE 90
            I +K TVSF +  +F   E+SI  CGVHVIMEE
Sbjct: 1054 IWRKFTVSFGVTSKFKDSELSIKTCGVHVIMEE 1085

BLAST of HG10006427 vs. ExPASy TrEMBL
Match: A0A1S3C131 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495278 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.6e-11
Identity = 49/93 (52.69%), Postives = 61/93 (65.59%), Query Frame = 0

Query: 1   MWLIVLYPHRDFDPKIWNDIMETSPEIDLRQPSFRINSRELDYNNEDDEDDCTSS--GES 60
           MWL+VLYPH +F     +DI+  S EI+L QPSF INS   D NN + +DD   +  GES
Sbjct: 891 MWLLVLYPHINFRLNS-DDIINRSQEINLHQPSFGINSIGRDNNNCNVDDDYRRNHIGES 950

Query: 61  IRKKVTVSFEL--RFNFYEVSINRCGVHVIMEE 90
           I +K TVSF +  +F   E+SI  CGVHVIMEE
Sbjct: 951 IWRKFTVSFGVTSKFKDSELSIKTCGVHVIMEE 982

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038876369.11.5e-1357.14LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida][more]
XP_031737216.12.4e-1154.84TMV resistance protein N isoform X3 [Cucumis sativus][more]
XP_011648801.12.4e-1154.84TMV resistance protein N isoform X2 [Cucumis sativus][more]
XP_008465653.24.0e-1154.84PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
XP_008455000.25.3e-1152.69PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LFP71.1e-1154.84TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G021510 PE=4 SV... [more]
A0A1S3CPD42.0e-1154.84TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103503294 PE=4 SV=1[more]
D9I8I62.6e-1152.81TIR-CC-NBS-AAA+ATPase class resistance protein OS=Cucumis sativus OX=3659 PE=4 S... [more]
A0A1S4DZW32.6e-1152.69TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495278... [more]
A0A1S3C1312.6e-1152.69TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495278... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10006427.1HG10006427.1mRNA