HG10006408 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006408
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Lipoxygenase
Location	Chr07: 18219959 .. 18220213 (+)
RNA-Seq Expression	HG10006408
Synteny	HG10006408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGAAAGATTCTAGGAGATGCCCTTAAAGCCACCGGCGATGCCCTTAGAACGACCGGGGACATTGCCGGGTCCGTCATAAATGCTAGAGGGAACTTTATCGATCGTGCTAGCGATGTCGGTCGGCTCAGGAAGACGAAGATCAAAAGGAAAGTGATTCTGATGAGTAGCAATGTCTTAGATTTCACTGAGTTTCATTCCATTGTTCTTGATGGTTTCAGTGAGCTATTGGGCAGTGGAATTGTATTGTAA

mRNA sequence

ATGATTGGAAAGATTCTAGGAGATGCCCTTAAAGCCACCGGCGATGCCCTTAGAACGACCGGGGACATTGCCGGGTCCGTCATAAATGCTAGAGGGAACTTTATCGATCGTGCTAGCGATGTCGGTCGGCTCAGGAAGACGAAGATCAAAAGGAAAGTGATTCTGATGAGTAGCAATGTCTTAGATTTCACTGAGTTTCATTCCATTGTTCTTGATGGTTTCAGTGAGCTATTGGGCAGTGGAATTGTATTGTAA

Coding sequence (CDS)

ATGATTGGAAAGATTCTAGGAGATGCCCTTAAAGCCACCGGCGATGCCCTTAGAACGACCGGGGACATTGCCGGGTCCGTCATAAATGCTAGAGGGAACTTTATCGATCGTGCTAGCGATGTCGGTCGGCTCAGGAAGACGAAGATCAAAAGGAAAGTGATTCTGATGAGTAGCAATGTCTTAGATTTCACTGAGTTTCATTCCATTGTTCTTGATGGTTTCAGTGAGCTATTGGGCAGTGGAATTGTATTGTAA

Protein sequence

MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNVLDFTEFHSIVLDGFSELLGSGIVL

Homology

[Close]

BLAST of HG10006408 vs. NCBI nr
Match: XP_038890817.1 (probable linoleate 9S-lipoxygenase 5 [Benincasa hispida])

HSP 1 Score: 137.5 bits (345), Expect = 5.3e-29
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNV 60
          M GKI+GDALK TGDALRTTGD+AGSVINA GNFIDRASD+GRL K KIK K+I+M +NV
Sbjct: 1  MFGKIIGDALKTTGDALRTTGDVAGSVINAGGNFIDRASDIGRLGKKKIKGKMIMMRNNV 60

Query: 61 LDFTEFHSIVLDGFSELLGSGIVL 85
          LDFTEFHS VLDGF+ELLGSGIVL
Sbjct: 61 LDFTEFHSSVLDGFTELLGSGIVL 84

[Close]

BLAST of HG10006408 vs. NCBI nr
Match: XP_022946174.1 (probable linoleate 9S-lipoxygenase 5 [Cucurbita moschata])

HSP 1 Score: 132.1 bits (331), Expect = 2.2e-27
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNV 60
          M GKI+GDALK TGDALRTTGD+AGSV+NA GN IDRA+D+GR+   KIK KVILM SNV
Sbjct: 1  MFGKIIGDALKTTGDALRTTGDVAGSVVNAGGNVIDRATDIGRIGNRKIKGKVILMRSNV 60

Query: 61 LDFTEFHSIVLDGFSELLGSGIVL 85
          LDF EFHS VLDGF+ELLGSGIVL
Sbjct: 61 LDFNEFHSTVLDGFTELLGSGIVL 84

[Close]

BLAST of HG10006408 vs. NCBI nr
Match: XP_023545238.1 (probable linoleate 9S-lipoxygenase 5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.1 bits (331), Expect = 2.2e-27
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNV 60
          M GKI+GDALK TGDALRTTGD+AGSV+NA GN IDRA+D+GR+   KIK KVILM SNV
Sbjct: 1  MFGKIIGDALKTTGDALRTTGDVAGSVVNAGGNVIDRATDIGRIGNRKIKGKVILMRSNV 60

Query: 61 LDFTEFHSIVLDGFSELLGSGIVL 85
          LDF EFHS VLDGF+ELLGSGIVL
Sbjct: 61 LDFNEFHSTVLDGFTELLGSGIVL 84

[Close]

BLAST of HG10006408 vs. NCBI nr
Match: KAG6599220.1 (putative linoleate 9S-lipoxygenase 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-27
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNV 60
          M GKI+GDALK TGDALRTTGD+AGSV+NA GN IDRA+D+GR+   KIK KVILM SNV
Sbjct: 1  MFGKIIGDALKTTGDALRTTGDVAGSVVNAGGNVIDRATDIGRIGNRKIKGKVILMRSNV 60

Query: 61 LDFTEFHSIVLDGFSELLGSGIVL 85
          LDF EFHS VLDGF+E+LGSGIVL
Sbjct: 61 LDFNEFHSTVLDGFTEVLGSGIVL 84

[Close]

BLAST of HG10006408 vs. NCBI nr
Match: XP_022999017.1 (probable linoleate 9S-lipoxygenase 5 [Cucurbita maxima])

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-26
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNV 60
          M GKI+GDALK TGDALRTTGD+AGSV+NA GN IDRA+D+G +   KIK KVILM SNV
Sbjct: 1  MFGKIIGDALKTTGDALRTTGDVAGSVVNAGGNVIDRATDIGWIGNRKIKGKVILMRSNV 60

Query: 61 LDFTEFHSIVLDGFSELLGSGIVL 85
          LDF EFHS VLDGF+ELLGSGIVL
Sbjct: 61 LDFNEFHSTVLDGFTELLGSGIVL 84

[Close]

BLAST of HG10006408 vs. ExPASy TrEMBL
Match: A0A6J1G320 (Lipoxygenase OS=Cucurbita moschata OX=3662 GN=LOC111450336 PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNV 60
          M GKI+GDALK TGDALRTTGD+AGSV+NA GN IDRA+D+GR+   KIK KVILM SNV
Sbjct: 1  MFGKIIGDALKTTGDALRTTGDVAGSVVNAGGNVIDRATDIGRIGNRKIKGKVILMRSNV 60

Query: 61 LDFTEFHSIVLDGFSELLGSGIVL 85
          LDF EFHS VLDGF+ELLGSGIVL
Sbjct: 61 LDFNEFHSTVLDGFTELLGSGIVL 84

[Close]

BLAST of HG10006408 vs. ExPASy TrEMBL
Match: A0A6J1K9N0 (Lipoxygenase OS=Cucurbita maxima OX=3661 GN=LOC111493533 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 9.1e-27
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNV 60
          M GKI+GDALK TGDALRTTGD+AGSV+NA GN IDRA+D+G +   KIK KVILM SNV
Sbjct: 1  MFGKIIGDALKTTGDALRTTGDVAGSVVNAGGNVIDRATDIGWIGNRKIKGKVILMRSNV 60

Query: 61 LDFTEFHSIVLDGFSELLGSGIVL 85
          LDF EFHS VLDGF+ELLGSGIVL
Sbjct: 61 LDFNEFHSTVLDGFTELLGSGIVL 84

[Close]

BLAST of HG10006408 vs. ExPASy TrEMBL
Match: A0A0A0LGD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G028500 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.9e-26
Identity = 65/84 (77.38%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 1  MIGKILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSNV 60
          MIGKILGDALK  GDA RTT DIAGSVINA GNF+DRASD+ RL K KIK KV+LM SNV
Sbjct: 1  MIGKILGDALKTAGDARRTTRDIAGSVINAGGNFLDRASDIRRLGKKKIKGKVVLMRSNV 60

Query: 61 LDFTEFHSIVLDGFSELLGSGIVL 85
          LDFTEFHS +LD  +ELLGSGIV+
Sbjct: 61 LDFTEFHSTILDNIAELLGSGIVI 84

[Close]

BLAST of HG10006408 vs. ExPASy TrEMBL
Match: A0A1S4E045 (probable linoleate 9S-lipoxygenase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494845 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 64/85 (75.29%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MIGK-ILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSN 60
          MIGK ILGDALK TG+ LRTTGD+AGS++NA GNFIDRASD+G+L K KIK KVIL+ SN
Sbjct: 1  MIGKIILGDALKITGNVLRTTGDVAGSIVNAGGNFIDRASDIGQLGKKKIKGKVILIRSN 60

Query: 61 VLDFTEFHSIVLDGFSELLGSGIVL 85
          VL+ TEFHS +LDGF+ELLGSGIV+
Sbjct: 61 VLNITEFHSSILDGFTELLGSGIVM 85

[Close]

BLAST of HG10006408 vs. ExPASy TrEMBL
Match: A0A5D3CPU3 (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00740 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 64/85 (75.29%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MIGK-ILGDALKATGDALRTTGDIAGSVINARGNFIDRASDVGRLRKTKIKRKVILMSSN 60
          MIGK ILGDALK TG+ LRTTGD+AGS++NA GNFIDRASD+G+L K KIK KVIL+ SN
Sbjct: 1  MIGKIILGDALKITGNVLRTTGDVAGSIVNAGGNFIDRASDIGQLGKKKIKGKVILIRSN 60

Query: 61 VLDFTEFHSIVLDGFSELLGSGIVL 85
          VL+ TEFHS +LDGF+ELLGSGIV+
Sbjct: 61 VLNITEFHSSILDGFTELLGSGIVM 85

The following BLAST results are available for this feature:

BLAST of HG10006408 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890817.1	5.3e-29	82.14	probable linoleate 9S-lipoxygenase 5 [Benincasa hispida]	[more]
XP_022946174.1	2.2e-27	78.57	probable linoleate 9S-lipoxygenase 5 [Cucurbita moschata]	[more]
XP_023545238.1	2.2e-27	78.57	probable linoleate 9S-lipoxygenase 5 [Cucurbita pepo subsp. pepo]	[more]
KAG6599220.1	5.0e-27	77.38	putative linoleate 9S-lipoxygenase 5, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022999017.1	1.9e-26	77.38	probable linoleate 9S-lipoxygenase 5 [Cucurbita maxima]	[more]

BLAST of HG10006408 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G320	1.1e-27	78.57	Lipoxygenase OS=Cucurbita moschata OX=3662 GN=LOC111450336 PE=3 SV=1	[more]
A0A6J1K9N0	9.1e-27	77.38	Lipoxygenase OS=Cucurbita maxima OX=3661 GN=LOC111493533 PE=3 SV=1	[more]
A0A0A0LGD8	5.9e-26	77.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G028500 PE=4 SV=1	[more]
A0A1S4E045	1.3e-25	75.29	probable linoleate 9S-lipoxygenase 5 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3CPU3	1.3e-25	75.29	Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00740 P...	[more]

BLAST of HG10006408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006408.1	HG10006408.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0031408	oxylipin biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen