HG10006385 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10006385
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr07: 17964663 .. 17964884 (+)
RNA-Seq ExpressionHG10006385
SyntenyHG10006385
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTAGGTATAAAGGCTGTCAGATTGTCGATGCTCGTGCCAGCCGATGCAAAAGTGACACCTGTTTTCACATCATCATCTGACAGTTTAGGATCTAAAAATGGAGGAACAAGCTCATTTATCCCCAACCTACAGGCCAACATATCAGGAATGAGTTTTCTATCGCTGAAACTTCCACTACTAACATGTCCAGGATATTTTTTGCCATATGGAAAGTAA

mRNA sequence

ATGACTCTAGGTATAAAGGCTGTCAGATTGTCGATGCTCGTGCCAGCCGATGCAAAAGTGACACCTGTTTTCACATCATCATCTGACAGTTTAGGATCTAAAAATGGAGGAACAAGCTCATTTATCCCCAACCTACAGGCCAACATATCAGGAATGAGTTTTCTATCGCTGAAACTTCCACTACTAACATGTCCAGGATATTTTTTGCCATATGGAAAGTAA

Coding sequence (CDS)

ATGACTCTAGGTATAAAGGCTGTCAGATTGTCGATGCTCGTGCCAGCCGATGCAAAAGTGACACCTGTTTTCACATCATCATCTGACAGTTTAGGATCTAAAAATGGAGGAACAAGCTCATTTATCCCCAACCTACAGGCCAACATATCAGGAATGAGTTTTCTATCGCTGAAACTTCCACTACTAACATGTCCAGGATATTTTTTGCCATATGGAAAGTAA

Protein sequence

MTLGIKAVRLSMLVPADAKVTPVFTSSSDSLGSKNGGTSSFIPNLQANISGMSFLSLKLPLLTCPGYFLPYGK
Homology
[Close]
BLAST of HG10006385 vs. NCBI nr
Match: THG20953.1 (hypothetical protein TEA_006628 [Camellia sinensis var. sinensis])

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-04
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 15  PADAKVTPVFTSSSDSLGSKNGGTSSFIPNLQANISGMSFLSLKLPLLT 64
           PADAK+TPV +SSSD  GS+NGGT S IPN+ A  SG SF     P+ T
Sbjct: 173 PADAKLTPVLSSSSDRFGSRNGGTMSLIPNMVATKSGTSFPFENRPVAT 221

[Close]
BLAST of HG10006385 vs. ExPASy TrEMBL
Match: A0A4S4EVH4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_006628 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 0 

Query: 15  PADAKVTPVFTSSSDSLGSKNGGTSSFIPNLQANISGMSFLSLKLPLLT 64
           PADAK+TPV +SSSD  GS+NGGT S IPN+ A  SG SF     P+ T
Sbjct: 173 PADAKLTPVLSSSSDRFGSRNGGTMSLIPNMVATKSGTSFPFENRPVAT 221

The following BLAST results are available for this feature:
BLAST of HG10006385 vs. NCBI nr
Match NameE-valueIdentityDescription
THG20953.13.0e-0459.18hypothetical protein TEA_006628 [Camellia sinensis var. sinensis][more]
BLAST of HG10006385 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10006385 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4S4EVH41.5e-0459.18Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0066... [more]
BLAST of HG10006385 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10006385.1HG10006385.1mRNA