HG10006372 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006372
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pre-mRNA-splicing factor 38
Location	Chr07: 17781694 .. 17785280 (+)
RNA-Seq Expression	HG10006372
Synteny	HG10006372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATCAGGGGAACGAACCCGCAGAATCTGGTGGAGAAGATTCTTCGCTCAAAGATCTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTGACGGCGGAGACATTGGTGGATAAAGCCATGGAGCTCGATCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCTACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTAATCGAGTTCATCAAGAACGAAGACTACAAGTAATTGTTCTTGTCATTTTGGTTTTCATTAAACAGAACTCTGAATTTTGGTTACCTAGAAGCGTTTAGGAGTAGGGTTAATTGGAAGGAATATTTCAATTGTTTGTTTTATGGAGTTTAAAGAAACCATGGTTTTGGGAACTTACTGCGAAACTTATGAAAACTAAATACTTGTAGGTGAGAGAGTTTTTGCAGTTGATCAGTGAATCGGAAATTAGGATAGTGAATAAGTTTAGAATTTCTTGATGGGCACCCTCTTTGTTAATTGTGATTTTATAAGCAAAAGAAATGGATGGACTATTAAGCTTATGGTTGAGCTAACTGAAGTACATTGCAAATGCGTTCTGTATCTCGTGGTTTTCTATCGTTCTTAAAGTTGTTGCTCACTCGCCTTAGCTTGAGATGATTGCTTTGCTTTTATACTGTATGGTCTTGAAAATGCCTTTTCTGCTTGGATCTTAATCATTTGTCTGTCAAATAATAACTACGTTGTCTTAGTGAAAACTCTCTCTCTCGTAATTTCCTGAGAATGGTATGTTTGTTTTCTAGCCTTTTTCAAGCATACTTTTGAAGTTACATTTTTCTTTTGTGACATAGATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAACCTCTGTACAATGACTATCGGAAATTGAGGAGAAAATTACCTGATGGATGTAAGCTTCTGGGCCTTTTTTTAAAAAACTTTATCTTACTAGTTATTAGGAAAACTAATTGATTTTACATTCTTGTTACTATAATGTATTTCTAGTTATATCTCCTCTCTAAAAAGAAGTTACAAACTCGATCTTATTTTTATTAGGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGACATAGCGCTGCCACGTGTCAAAAAGAGGTATGGTACTGATTGCTCATGTGGCTATTTTCAGTCGATTTATTTTTCAAGCGGAAGTTGATAATCTATTATAAAAATCAGGGCATTAGGAGAAATATGCATTATTCATTGTTTGACAAACAGAAGTACATGGATCACAAGTTCTACATATTGCCAGTGTTCAGTTTTGAATGTGATGCTTCTTTTGAAGTAACCTAAATAAGATACACTTTGTAATGGCAGATGGACCCTTGAATCTTCTGGATCATTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGAGGTTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGTGAAGGTATAAACACATTCTCTGTTTGCATGCAAAAGAATCTAGTCTGCATTTTCTTATTCTTGGCAACCTGTTTGATACCTTGCATCTGCAGAATTATTATCGAGGGAGGAGTCCTGTGCGGGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGTCTGATCCCCCGTCTTCTGTTTTTGTTTTTTTCATTTCTTCTCCCTCCTTTGCCTAAACATTCACAAATTCAGAAAGAGCTTCACAGTTGCATGGCATCCATAAAAATGAGAGGCAAGGGAGGGTGTCATTATTTGATATCTCCACTCTATTAGTTGCCTTCATTTTGTAAATCACATAATTTTTTGTTGAATGTGAATAATGATGTCCGAGGCCAAAATCAACAATCTTGAAGTCAAAATTTGTGTTTTACGTTTTACTCTAGTCTTTTTGTTGCCAATTCAATTCTCTTAGTAGAGTTGGTGTTGATGAACGTTGAACAATTAGATTGAACAAAATTAGGAGATGAATGGGAGAATGGATGTCGTGGTGTGGCATGAAGTTGTTAGCTTGGTCTGGAAAAATCCAAACTCTTGCCTATCTTGGGATTGGGTTTAGTTGCTTCAACCTTCTAAGATCTTTGCCCTTTTGACCACCATGTGTAGGTCAAGCTGAGTCCTAAGTTGGTTGGTTTTTGACCATGCTACTTCTGTGAGTGTTACGTTGATTTTGGTGTTTGACAACATGCCTTCTTTGAGAACAAAGATATTATTTTCTTTTTGTTTCTGACATGATAGGTTATTTAAATAAAATGAATCCTGATTTGATCTGGCTCTTTTTAAACTGATTTTGATGCACTCTGGGGAAAAAATCAGTCTTGTTTTGTTTTGTTCTTTTTTTTTTTTCTAAATTACTTAGCTGGAAGCAGTTGGATCTGTTATTCTTGGATTACTATATCCTTACTGGTCAATTAACATTCGCATGTTTTTCTGTCACAACCATGGTATTTCAAGCCACTGGTTGCTTGCTGCTTCCTACAGTAAATTCTCAAGATCCTGCCAGGTTTCTCTGTACTGACAGTGTGCAGCTGAGAAGTATGATGGATCGTACATATATTTGTCATAGTGATCTCATTTTTACTTTTTACCACATCGAAAAATTATCTTTGGTGACTATAGCTGAGAACTACTCATATGCTTTTCCATTTATATTTTCCTTTAGCTTTTTGGTGAAAAAGCTAATTTGATTCTTTTTCCAGGCACCACCGAGTTTATATATGGTGTTCTTCCTAAACGTTAAGCCTTTCTGCCACTTCTGCTTTTTCTATGAGATTACTTGTTTATGCATTCAGCATAGGATAATACATTATTCTCCATCTTTTGATCCTGAAACTCTTGTCTATGATGCGTTACTTAGATGCATTTATGAGCTGTCTTACTACATGCATTGAGGGAAAAATATTGATCTCTCGACACACCACACTTTCTTTTGTTTAATCACAGGGACCGAGACAATGATAGAGACCGGGACTATGACAGAGACTATGATAGAGATCGGGGACGTGGAAGAGATAGAGATAGAGATCGAGAAAGGGATCGGGATCGGGATAGAGATCGAGATCGAGATCGGGACAGGGACAGGGACAGAGATAGGGATAGGGACAGGGATCGCTATCGCCTGAGGGATGAGAAGGAATATGGAAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGACAGAGATCGTGGTAGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCCTTAGTCCTAGAAGAAGGGATGGAGCGGAGGATAGAGAGGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAGGAAGCTGGAGCAGGCGAGGAAGATCCCGAGATCGCCGAATGGAATAGGATTCGTGCATCTCTTGGATTGGCACCTCTCAAGTAG

mRNA sequence

ATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATCAGGGGAACGAACCCGCAGAATCTGGTGGAGAAGATTCTTCGCTCAAAGATCTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTGACGGCGGAGACATTGGTGGATAAAGCCATGGAGCTCGATCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCTACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTAATCGAGTTCATCAAGAACGAAGACTACAAATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAACCTCTGTACAATGACTATCGGAAATTGAGGAGAAAATTACCTGATGGATGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGACATAGCGCTGCCACGTGTCAAAAAGAGATGGACCCTTGAATCTTCTGGATCATTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGAGGTTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGTGAAGAATTATTATCGAGGGAGGAGTCCTGTGCGGGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGGACCGAGACAATGATAGAGACCGGGACTATGACAGAGACTATGATAGAGATCGGGGACGTGGAAGAGATAGAGATAGAGATCGAGAAAGGGATCGGGATCGGGATAGAGATCGAGATCGAGATCGGGACAGGGACAGGGACAGAGATAGGGATAGGGACAGGGATCGCTATCGCCTGAGGGATGAGAAGGAATATGGAAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGACAGAGATCGTGGTAGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCCTTAGTCCTAGAAGAAGGGATGGAGCGGAGGATAGAGAGGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAGGAAGCTGGAGCAGGCGAGGAAGATCCCGAGATCGCCGAATGGAATAGGATTCGTGCATCTCTTGGATTGGCACCTCTCAAGTAG

Coding sequence (CDS)

ATGGCTAATCGTACGGACCCAGCTGCGAAAAGCATCAGGGGAACGAACCCGCAGAATCTGGTGGAGAAGATTCTTCGCTCAAAGATCTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTGACGGCGGAGACATTGGTGGATAAAGCCATGGAGCTCGATCATCTCGGTGGTACATATGGTGGCAACCGCAAGCCTACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTAATCGAGTTCATCAAGAACGAAGACTACAAATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTGTATCGTTACCTGGAACCTCTGTACAATGACTATCGGAAATTGAGGAGAAAATTACCTGATGGATGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGACATAGCGCTGCCACGTGTCAAAAAGAGATGGACCCTTGAATCTTCTGGATCATTGCCTGCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAAGAGGAGGTTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGTGAAGAATTATTATCGAGGGAGGAGTCCTGTGCGGGAGAGAGACAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGGACCGAGACAATGATAGAGACCGGGACTATGACAGAGACTATGATAGAGATCGGGGACGTGGAAGAGATAGAGATAGAGATCGAGAAAGGGATCGGGATCGGGATAGAGATCGAGATCGAGATCGGGACAGGGACAGGGACAGAGATAGGGATAGGGACAGGGATCGCTATCGCCTGAGGGATGAGAAGGAATATGGAAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGACAGAGATCGTGGTAGGAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAGGATGGGGAGTACCGGAAGAGACACACCCGTAGCAGCCTTAGTCCTAGAAGAAGGGATGGAGCGGAGGATAGAGAGGAGCCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAGGAAGCTGGAGCAGGCGAGGAAGATCCCGAGATCGCCGAATGGAATAGGATTCGTGCATCTCTTGGATTGGCACCTCTCAAGTAG

Protein sequence

MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPARKSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRDNDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGAEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK

Homology

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BLAST of HG10006372 vs. NCBI nr
Match: XP_038890973.1 (pre-mRNA-splicing factor 38 [Benincasa hispida])

HSP 1 Score: 700.7 bits (1807), Expect = 7.5e-198
Identity = 390/405 (96.30%), Postives = 397/405 (98.02%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCF+LSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFALSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEE EPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRE--RDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRD 300
            DRDRDYDRDYDRDRGRGR+RDRDRE  RDRDRDRDRDRDRDRDRDRDRDRDRDR+RLRD
Sbjct: 241 YDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRDRHRLRD 300

Query: 301 EKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRD 360
           EKEYGRDRDREREGRERERRDRDRGRRRSHS+SRSRSKDREDGEYRKRH+RSS+SPRRRD
Sbjct: 301 EKEYGRDRDREREGRERERRDRDRGRRRSHSKSRSRSKDREDGEYRKRHSRSSVSPRRRD 360

Query: 361 GAEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           GAEDREEP+KKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 GAEDREEPRKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 403

[Close]

BLAST of HG10006372 vs. NCBI nr
Match: XP_031737285.1 (pre-mRNA-splicing factor 38 [Cucumis sativus] >KAE8651621.1 hypothetical protein Csa_021262 [Cucumis sativus])

HSP 1 Score: 699.5 bits (1804), Expect = 1.7e-197
Identity = 390/409 (95.35%), Postives = 395/409 (96.58%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSLSHVDEVIDELLTKDYSCD+ALPRVKKRWTLES+GSLP R
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEE EPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERD------RDRDRDRDRDRDRDRDRDRDRDRDRY 300
            DRDRDYDRDYDRDRGRGR+RDRDRERD      RDRDRDRDRDRDRDRDRDRDRDRDRY
Sbjct: 241 YDRDRDYDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRY 300

Query: 301 RLRDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSP 360
           RLRDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SP
Sbjct: 301 RLRDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSP 360

Query: 361 RRRDGAEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           RRRDGAEDREEPKKKKEKKEKKE GAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 RRRDGAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 407

[Close]

BLAST of HG10006372 vs. NCBI nr
Match: XP_008453888.1 (PREDICTED: pre-mRNA-splicing factor 38 [Cucumis melo])

HSP 1 Score: 691.0 bits (1782), Expect = 6.0e-195
Identity = 384/403 (95.29%), Postives = 390/403 (96.77%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLP R
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEE EPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEK 300
            DRDRDYDRDYDRDRGRGR+RDRDRE    RDRDR+RDRDRDR+R+RDRDRDRYRLRDEK
Sbjct: 241 YDRDRDYDRDYDRDRGRGRERDRDRE----RDRDRERDRDRDRERERDRDRDRYRLRDEK 300

Query: 301 EYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGA 360
           EYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SPRRRDG 
Sbjct: 301 EYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGV 360

Query: 361 EDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           EDREEPKKKKEKKEKKE GAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 EDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 397

[Close]

BLAST of HG10006372 vs. NCBI nr
Match: XP_023545282.1 (pre-mRNA-splicing factor 38-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 681.8 bits (1758), Expect = 3.6e-192
Identity = 380/407 (93.37%), Postives = 389/407 (95.58%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKE+VEPINDSLEDDIH KNYYRGRSPVRERDRDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEK 300
            +RDRD DRDYDRDRGRG      RERDRDR+RDRDRDRDRDRDRDRDRDRDRY LRDEK
Sbjct: 241 YERDRDNDRDYDRDRGRG------RERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEK 300

Query: 301 EYGRDRDREREG----RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRR 360
           EYGRDRDREREG    RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRR
Sbjct: 301 EYGRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRR 360

Query: 361 RDGAEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           R+GAEDREEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 RNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 401

[Close]

BLAST of HG10006372 vs. NCBI nr
Match: KAG7030134.1 (Pre-mRNA-splicing factor 38 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 676.4 bits (1744), Expect = 1.5e-190
Identity = 380/409 (92.91%), Postives = 389/409 (95.11%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKE+VEPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEK 300
            +RDRD DRDYDRDRGRGR+RDRDRE    RDRDRDRDRDRDRDRDRDRDRDRY LRDEK
Sbjct: 241 YERDRDNDRDYDRDRGRGRERDRDRE----RDRDRDRDRDRDRDRDRDRDRDRYHLRDEK 300

Query: 301 EYGRDRDREREG------RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSP 360
           EYGRDRDREREG      RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SP
Sbjct: 301 EYGRDRDREREGRERERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISP 360

Query: 361 RRRDGAEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           RRR+GAEDREEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 RRRNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 403

[Close]

BLAST of HG10006372 vs. ExPASy Swiss-Prot
Match: Q8LB54 (Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1)

HSP 1 Score: 458.0 bits (1177), Expect = 1.1e-127
Identity = 278/406 (68.47%), Postives = 310/406 (76.35%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK+R+KL DG FSL+HVDEVI+ELLTKDYSCDIA+PR+KKRWTLE +G L  R
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KS LEDDFEEEEEKEE E I D  ED++      R +SP RER+RDRDRRRDSHRHRDRD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMD----QRRKSPERERERDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRD--RGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRD 300
            DRD D DRD+DRD  R RG  RDRDRERDRD  R+RDRDR+R RDR+RDR         
Sbjct: 241 YDRDYDMDRDHDRDYERERGHGRDRDRERDRDHYRERDRDRERGRDRERDR--------- 300

Query: 301 EKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRD 360
                                RDR RRRS SRSR           RKRH          D
Sbjct: 301 ---------------------RDRARRRSRSRSRD----------RKRH--------ETD 354

Query: 361 GAEDREEPKKKKEKKEK-KEAGAGEEDPEIAEWNRIRASLGLAPLK 404
              DREEPKKKKEKKEK KE G    +PEIAE NR+RASLG+ PL+
Sbjct: 361 DVRDREEPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLR 354

[Close]

BLAST of HG10006372 vs. ExPASy Swiss-Prot
Match: Q7JVL3 (Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 8.4e-67
Identity = 180/338 (53.25%), Postives = 229/338 (67.75%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   AK++ GTNPQ L+EKI+RS+IY + YWKEQCF LTAE LVDKAMEL  +GG 
Sbjct: 1   MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPT F+CL +KMLQIQPEK+IV+EFIKNE++KYVR LGAFYLRLTG  +D Y+YL
Sbjct: 61  YGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGAALDCYKYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLY D RKLRR+   G F + ++DE IDELL  D  CDI LPR++KR  LE +  +  +
Sbjct: 121 EPLYIDNRKLRRQNRAGQFEIVYMDEYIDELLRNDRVCDIILPRIQKRSILEENNEIEPK 180

Query: 181 KSALEDDFEEE--EEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRR---DSHR 240
            S L++D ++E   ++E+ +  N   E+   V+   R RS  R R R+R+RR    +S R
Sbjct: 181 VSVLDEDLDDELPSDEEKADETNRPKENSTAVRRPRRVRSKSRSRSRERERRSGQGNSAR 240

Query: 241 HRD-----RDNDRDRD-------YDRDYDRDRGRGRDRDRDRER-DRDRDRDRDRDRDRD 300
            RD      D DR R+       ++ DYDR +  GR  DR+RER DRD  R+R+RD DRD
Sbjct: 241 SRDYYDELEDYDRQRNRVRNRDTHNEDYDRRQNNGR-HDRERERQDRDSIRERERDGDRD 300

Query: 301 -RDRDRDRDRDRYRLRDEKEYGRDRDREREGR-ERERR 319
            RDR+R+R+RDR         GR   RER+ R ER+RR
Sbjct: 301 RRDRERERERDR---------GRHDQRERDSRGERDRR 328

[Close]

BLAST of HG10006372 vs. ExPASy Swiss-Prot
Match: Q6DHU4 (Pre-mRNA-splicing factor 38A OS=Danio rerio OX=7955 GN=prpf38a PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.0e-61
Identity = 166/336 (49.40%), Postives = 205/336 (61.01%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A S+ GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDANSVHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELKFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT VD Y+YL
Sbjct: 61  YGGNVKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTSVDCYKYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CDI LPR++KR  LE +  L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHAERMCDIILPRLQKRQVLEEAELLDPR 180

Query: 181 KSALEDDFEE----EEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRH 240
            SALE+D +E    EEE +E E        + H ++Y         RD DR RR  S R+
Sbjct: 181 ISALEEDLDEVETSEEEDDEDEKPERMQSPEPHRRSY---------RDMDRPRRSPSPRY 240

Query: 241 RDRDNDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRL 300
           R               R R   R     + R     R+RDRDR R +   R R R R R 
Sbjct: 241 R---------------RSRSPRRRSRSPKRRSPSPRRERDRDRHRSKSPRRHRSRSRERR 300

Query: 301 RDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSR 333
              K  G  R        +    R    ++SH RSR
Sbjct: 301 HRSKSPGHHRSHRHRSHSKSPESRS---KKSHKRSR 309

[Close]

BLAST of HG10006372 vs. ExPASy Swiss-Prot
Match: Q0P5I6 (Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.4e-60
Identity = 159/324 (49.07%), Postives = 209/324 (64.51%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CDI LPR++KR+ LE +  L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLE---DDIHVKNYYRGRSPVRERDRDRDRRRDSHRHR 240
            SALE+D ++ E  EE E  ++ LE      H +  Y        RD D+ RR  + R+R
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSY--------RDLDKPRRSPTLRYR 240

Query: 241 DRDNDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLR 300
                R R   R     + R     R+R R +   R R R RDR R R R +    +R  
Sbjct: 241 ---RSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDR-RHRSRSKSPGHHRSH 300

Query: 301 DEKEYGRDRDREREGRERERRDRD 322
             + + +  +R ++  ++ RR  +
Sbjct: 301 RHRSHSKSPERSKKSHKKSRRGNE 312

[Close]

BLAST of HG10006372 vs. ExPASy Swiss-Prot
Match: Q8NAV1 (Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.4e-60
Identity = 159/324 (49.07%), Postives = 209/324 (64.51%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CDI LPR++KR+ LE +  L  R
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLE---DDIHVKNYYRGRSPVRERDRDRDRRRDSHRHR 240
            SALE+D ++ E  EE E  ++ LE      H +  Y        RD D+ RR  + R+R
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSY--------RDLDKPRRSPTLRYR 240

Query: 241 DRDNDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLR 300
                R R   R     + R     R+R R +   R R R RDR R R R +    +R  
Sbjct: 241 ---RSRSRSPRRRSRSPKRRSPSPRRERHRSKSPRRHRSRSRDR-RHRSRSKSPGHHRSH 300

Query: 301 DEKEYGRDRDREREGRERERRDRD 322
             + + +  +R ++  ++ RR  +
Sbjct: 301 RHRSHSKSPERSKKSHKKSRRGNE 312

[Close]

BLAST of HG10006372 vs. ExPASy TrEMBL
Match: A0A1S3BXB0 (Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1)

HSP 1 Score: 691.0 bits (1782), Expect = 2.9e-195
Identity = 384/403 (95.29%), Postives = 390/403 (96.77%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLP R
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKEE EPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEK 300
            DRDRDYDRDYDRDRGRGR+RDRDRE    RDRDR+RDRDRDR+R+RDRDRDRYRLRDEK
Sbjct: 241 YDRDRDYDRDYDRDRGRGRERDRDRE----RDRDRERDRDRDRERERDRDRDRYRLRDEK 300

Query: 301 EYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDGA 360
           EYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SPRRRDG 
Sbjct: 301 EYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGV 360

Query: 361 EDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           EDREEPKKKKEKKEKKE GAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 EDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 397

[Close]

BLAST of HG10006372 vs. ExPASy TrEMBL
Match: A0A6J1G4M6 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.8e-190
Identity = 378/407 (92.87%), Postives = 387/407 (95.09%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRWTLES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKE+VEPINDSLEDDIH KNYYRGRSPVRE  RDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRE--RDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEK 300
            +RDRD DRDYDRDRGRG      RERDRDR+RDRDRDRDRDRDRDRDRDRDRY LRDEK
Sbjct: 241 YERDRDNDRDYDRDRGRG------RERDRDRERDRDRDRDRDRDRDRDRDRDRYHLRDEK 300

Query: 301 EYGRDRDREREG----RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRR 360
           EYGRDRDREREG    RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRR
Sbjct: 301 EYGRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRR 360

Query: 361 RDGAEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           R+GAEDREEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 RNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 399

[Close]

BLAST of HG10006372 vs. ExPASy TrEMBL
Match: A0A6J1FBK8 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 SV=1)

HSP 1 Score: 672.9 bits (1735), Expect = 8.1e-190
Identity = 376/404 (93.07%), Postives = 388/404 (96.04%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRR+L DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRW LES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKE+VEPIND+LED+IH KNYYRGRSPVRE  RD+DRR DSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRE--RDKDRRHDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEK 300
            DRDRDYDRDYDRDRGRGR+RDRD  RDRDRDRDRDRDRDR RDRDRDRDRDRYRLRD+K
Sbjct: 241 YDRDRDYDRDYDRDRGRGRERDRD--RDRDRDRDRDRDRDRGRDRDRDRDRDRYRLRDDK 300

Query: 301 EYGRDRDREREGRERERRDRD-RGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDG 360
           EY RDRDREREGRERERRDRD  GRRRSHSRSRSRSKDREDGEYRKRH RSS SPRRRDG
Sbjct: 301 EYSRDRDREREGRERERRDRDHHGRRRSHSRSRSRSKDREDGEYRKRHARSSASPRRRDG 360

Query: 361 AEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           AEDR+EPK+KKEKKEKKE GAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 AEDRDEPKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 400

[Close]

BLAST of HG10006372 vs. ExPASy TrEMBL
Match: A0A6J1HPQ9 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=1)

HSP 1 Score: 664.1 bits (1712), Expect = 3.8e-187
Identity = 371/404 (91.83%), Postives = 383/404 (94.80%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRR+L DGCFSL+HVDEVIDELLTKDYSCDIALPRVKKRW LES+GSLPAR
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKE+VEPIND+LED+IH KNYYRGRSPVRE  RD+DRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRE--RDKDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEK 300
            DRDRDYDRDYDRDRGRG      RERDRDRDRDRDRDRDRDR RDRDRDRDRYRLRD+K
Sbjct: 241 YDRDRDYDRDYDRDRGRG------RERDRDRDRDRDRDRDRDRGRDRDRDRDRYRLRDDK 300

Query: 301 EYGRDRDREREGRERERRDRD-RGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRDG 360
           EY RDRD EREGRERERRDRD  GRRRSHSR+RSRSKDREDGEYRKRH R S SPRRRDG
Sbjct: 301 EYSRDRDGEREGRERERRDRDHHGRRRSHSRNRSRSKDREDGEYRKRHARCSASPRRRDG 360

Query: 361 AEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           AEDR+EPK+KKEKKEKKE GAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 AEDRDEPKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 396

[Close]

BLAST of HG10006372 vs. ExPASy TrEMBL
Match: A0A6J1KGY3 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111493773 PE=3 SV=1)

HSP 1 Score: 649.8 bits (1675), Expect = 7.4e-183
Identity = 367/407 (90.17%), Postives = 377/407 (92.63%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAK+IRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKNIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRKLRRKL DGCFSL+H+DEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHMDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KSALEDDFEEEEEKE+VEPINDSLE DIH KNYYRGRSPVRE  RDRDRRRDSHRHRDRD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEGDIHEKNYYRGRSPVRE--RDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRDRGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEK 300
            +R    DRD DRDRGRGR+RDRDRE          RDRDRDRDRDRDRDRDRY LRDEK
Sbjct: 241 YER----DRDIDRDRGRGRERDRDRE----------RDRDRDRDRDRDRDRDRYHLRDEK 300

Query: 301 EYGRDRDREREG----RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRR 360
           EYGRDRDREREG    RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSS+SPRR
Sbjct: 301 EYGRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSVSPRR 360

Query: 361 RDGAEDREEPKKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 404
           R+G EDREEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 RNGVEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 391

[Close]

BLAST of HG10006372 vs. TAIR 10
Match: AT2G40650.1 (PRP38 family protein )

HSP 1 Score: 458.0 bits (1177), Expect = 7.9e-129
Identity = 278/406 (68.47%), Postives = 310/406 (76.35%), Query Frame = 0


Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLPDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180
           EPLYNDYRK+R+KL DG FSL+HVDEVI+ELLTKDYSCDIA+PR+KKRWTLE +G L  R
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRD 240
           KS LEDDFEEEEEKEE E I D  ED++      R +SP RER+RDRDRRRDSHRHRDRD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMD----QRRKSPERERERDRDRRRDSHRHRDRD 240

Query: 241 NDRDRDYDRDYDRD--RGRGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRD 300
            DRD D DRD+DRD  R RG  RDRDRERDRD  R+RDRDR+R RDR+RDR         
Sbjct: 241 YDRDYDMDRDHDRDYERERGHGRDRDRERDRDHYRERDRDRERGRDRERDR--------- 300

Query: 301 EKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSLSPRRRD 360
                                RDR RRRS SRSR           RKRH          D
Sbjct: 301 ---------------------RDRARRRSRSRSRD----------RKRH--------ETD 354

Query: 361 GAEDREEPKKKKEKKEK-KEAGAGEEDPEIAEWNRIRASLGLAPLK 404
              DREEPKKKKEKKEK KE G    +PEIAE NR+RASLG+ PL+
Sbjct: 361 DVRDREEPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLR 354

[Close]

BLAST of HG10006372 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 3.6e-04
Identity = 100/337 (29.67%), Postives = 157/337 (46.59%), Query Frame = 0


Query: 18  QNLVEKILRSKIYQNTYWKEQCFGL-TAETLVDKAM-ELDHLGGTYGGN-RKPTPFMCLV 77
           ++L+EK+L   I  + Y+KE  +GL T   ++D+   +++H+    GGN R P+   CL+
Sbjct: 12  ESLLEKVLSMNILSSDYFKE-LYGLKTYHEVIDEIYNQVNHVEPWMGGNCRGPSTAYCLL 71

Query: 78  MKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKL 137
            K   ++   + +   +K+ D  Y+R +G  YLR       ++ + EP   D  +     
Sbjct: 72  YKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDDEEFS--- 131

Query: 138 PDGCFSLSHVDEVIDELLTKDYSCDIALPRV-----KKRWTLESSGSLPARKSALEDDFE 197
           P     ++ +   + +LL   Y  D   PR+     ++  +     +LP + S    D  
Sbjct: 132 PGSNGRMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGSTGDMT 191

Query: 198 EEEEKEEVEPINDSLEDDIHVKNYYRGRSPVRERDRDRDRRRDSHRHRDRDNDRDRDYDR 257
              E     P   S++  + V   +  R+P R   R     R             R    
Sbjct: 192 RGSEDTARRP--PSVKASLSVS--FGQRAPHRASTRGSSPVR-------------RPPPT 251

Query: 258 DYDRDRG-----RGRDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRYRLRDEKEYGR 317
            YDR+ G     R   R + R+   DRD DR R+R+R++DR+R+R RDRYR R E++YG 
Sbjct: 252 GYDRNGGDEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERERGRDRYRER-ERDYGN 311

Query: 318 DRDREREGRERERR-----DRDRGRRRSHSRSRSRSK 337
           DR   R+   R RR     DR R  RRS SRSRSRS+
Sbjct: 312 DRRSRRDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSR 326

The following BLAST results are available for this feature:

BLAST of HG10006372 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890973.1	7.5e-198	96.30	pre-mRNA-splicing factor 38 [Benincasa hispida]	[more]
XP_031737285.1	1.7e-197	95.35	pre-mRNA-splicing factor 38 [Cucumis sativus] >KAE8651621.1 hypothetical protein...	[more]
XP_008453888.1	6.0e-195	95.29	PREDICTED: pre-mRNA-splicing factor 38 [Cucumis melo]	[more]
XP_023545282.1	3.6e-192	93.37	pre-mRNA-splicing factor 38-like [Cucurbita pepo subsp. pepo]	[more]
KAG7030134.1	1.5e-190	92.91	Pre-mRNA-splicing factor 38 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10006372 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LB54	1.1e-127	68.47	Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1	[more]
Q7JVL3	8.4e-67	53.25	Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=...	[more]
Q6DHU4	4.0e-61	49.40	Pre-mRNA-splicing factor 38A OS=Danio rerio OX=7955 GN=prpf38a PE=2 SV=1	[more]
Q0P5I6	3.4e-60	49.07	Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1	[more]
Q8NAV1	3.4e-60	49.07	Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1	[more]

BLAST of HG10006372 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BXB0	2.9e-195	95.29	Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1	[more]
A0A6J1G4M6	4.8e-190	92.87	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 S...	[more]
A0A6J1FBK8	8.1e-190	93.07	Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 S...	[more]
A0A6J1HPQ9	3.8e-187	91.83	Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=...	[more]
A0A6J1KGY3	7.4e-183	90.17	Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111493773 PE=3 SV=...	[more]

BLAST of HG10006372 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40650.1	7.9e-129	68.47	PRP38 family protein	[more]
AT5G37370.1	3.6e-04	29.67	PRP38 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005037	Pre-mRNA-splicing factor 38	PFAM	PF03371	PRP38	coord: 10..173 e-value: 9.8E-61 score: 204.7
IPR005037	Pre-mRNA-splicing factor 38	PANTHER	PTHR23142	UNCHARACTERIZED	coord: 1..396
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 333..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..202
None	No IPR available	PANTHER	PTHR23142:SF1	PRE-MRNA-SPLICING FACTOR 38A	coord: 1..396

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006372.1	HG10006372.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0071011	precatalytic spliceosome