HG10006364 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006364
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	zinc finger matrin-type protein 2
Location	Chr07: 17706270 .. 17708709 (-)
RNA-Seq Expression	HG10006364
Synteny	HG10006364

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCATACCAGCAATACTGTAAGTTCTATTCTCCTTTTTCGTTTTAAACCTAACTTACTGATATTCTATCCCAACTAGAATCCTCTGAATGGTTCTGTTTCTGGTTTGATAAACATCATTAAGAATGATCAATAATCTTTACTCTTTCTTTTTGGGATTTTGATGAGGTGTCTTTGCAACTAATTTCGGTCGATTTCTTATATGTAGGCAGCTGGAGTCGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCCCGTGAGCGTGAAAAACAGGTTGGGGCTTTTGAAATTTCTCGTTCTCATCGTCATCTTAATGCTTATTTCTATGAGTGTTCCTCAAATGTTTCAATTTTTTCTGATCGTAATGTCTTTAATCTGTATTTCAGGAGGTTGAGAGGGTTAAGTCCAAATGTAAGTGTTTCTTTTCCTGCCGTTTATGTTGAGTATTTTGCTTGTGTTCACTTGTAATTCTAGAAACTAGATTATGTAGACTTGGTTTGATGGTTCAGAAGGATTTAATTTTTCATCTTTCTTCAGTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCAGATTGGGAAAAACCCAGGTTAGTCAGGCTATTTCTCTCTCTGTTACTTGAAACATTATCTTGAATCCATGTGTATATTGGTCTCTTTGATGGAGAAACTGTATTTGCACTTCATAAGGCTGTCTTGAGTCACTAATTGTTCGTTATTTCATTCAGTTCTGTCAGTAGTACATGAACTTTCAAAATCTTTAGTATATTAACTTTTAGGTTATCAGATTTTGGCCTGTGGTCTCTGGATGGATGTTGCTATAGATTCAAGTTCTCTATGTGGGATCATTATTTGACATATAATACTTATTTCATGTGACCTGTACTGCACGTAGTTAACTGGGCAGTATGTTAGATCTCCTCTGTAAGACATTTATATGATGATGGGGAATGACTATTTTGTATATTCACTTTATAGTTTATCTTACTGCTGATAGTGATGGAAAAACATTTAAAAGGTTATGTTCATTAGGCCTCGTTTTGATGAACTCATATATGAATTGGGGAATCGCACTCGATTAAAGCAAATCAACAATTACCTCATTATGAAACAAGTTTTTTTTTGTATGTCTTGCACATGTCAATATAATTTTCTCAATCTTAGATTTCAGTTGCTGTGTTCAATGTCTTATGATTCTGACCTGTTTCATTCATGTGCAGGTTGTCACTCCAGTTGCACCTTTAAGCCAGCAGGTATCACGCTTAACTGTCTTTTCTCTTAGAATTGCTGGAGTTAAATCTTGAATTACATTTGAGCAATTTCATTTTTTGATGAGTGTATAACTTATTGACTTGAAAAAAAAAAACTGGAGGAAAAATGAAGGTGGCTTTGCATGTATGGTTTTGGTTAATGTGCTCTTCAATTGAGTGTCCCATGGGTGCTGTGTGATGGAATATAAATTACACTTAATTTCTTATTGTTTTTTTTTCTTCTTTATATTATATTAATGAGTTCCTTTTCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACGTATGCTATCCCTTTTGCCACAACTTTAGCCAATTAAGTGGGTGAAATTTTCAGGTTTTTTATTTTCTTTACCTTGTTTTTCTATTGACTCATGTTGTAGATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTTTGGAACAGGTACCTCTTAAATACTTAGAAAGATGGAATTATTCATTATTTTAGATATTTGAGAAATCTCAGTGTCCAAGGGGCTAAGTAGCTTTATGTGAAATAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGGTAAACCTTGAGAATTCAGAGTTAGTTTTTTTGGGGAAAAAATGGGATTTCCCTCTCCATGCTAATTTCATTGATGGATGCCACTATCGTTACAATGCCATGCTTTTCACTGCAAAAATATACTAGCATCCAATATTATCAATACTTTTTGTTTCATCTTTTAGAATTATGTTTTATTTACTGATGCTATCTTCTGTTTTTCCTTAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGTGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGGTTAGTACTACGATCTAACGATTTCGGTTAAAAAAAACGATTTCTATCATGGAAAGAGAGGATCACAGTTTTCACTTTTGTTATTCTCCTGGAGTGTAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTTCGTTCATCCAAGAAGTGA

mRNA sequence

ATGGCTCATACCAGCAATACTGCAGCTGGAGTCGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCCCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCAGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTTTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTTTGGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGTGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTTCGTTCATCCAAGAAGTGA

Coding sequence (CDS)

ATGGCTCATACCAGCAATACTGCAGCTGGAGTCGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCCCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCAGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTTTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTCGTCAAGGATTCTGCAAATTACTTGGATCACATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTTTGGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGATCTTGAAGAGCGTATACTAAAGCAGCAACAAGAAGAAGAACAACGAAAGCGTGAGCGTCGAGAAAGAAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGCTTTCGTTCATCCAAGAAGTGA

Protein sequence

MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK

Homology

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BLAST of HG10006364 vs. NCBI nr
Match: XP_008453709.1 (PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453717.1 PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453724.1 PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_038889474.1 zinc finger matrin-type protein 2 [Benincasa hispida] >XP_038889475.1 zinc finger matrin-type protein 2 [Benincasa hispida] >XP_038889476.1 zinc finger matrin-type protein 2 [Benincasa hispida])

HSP 1 Score: 375.2 bits (962), Expect = 3.6e-100
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. NCBI nr
Match: XP_011648855.1 (zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger matrin-type protein 2 [Cucumis sativus] >XP_031737170.1 zinc finger matrin-type protein 2 [Cucumis sativus] >KGN60986.1 hypothetical protein Csa_021129 [Cucumis sativus])

HSP 1 Score: 372.9 bits (956), Expect = 1.8e-99
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQEV+RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. NCBI nr
Match: XP_023536719.1 (zinc finger matrin-type protein 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 368.6 bits (945), Expect = 3.4e-98
Identity = 197/202 (97.52%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQE ERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. NCBI nr
Match: XP_022965943.1 (zinc finger matrin-type protein 2 [Cucurbita maxima])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQE ERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. NCBI nr
Match: KAG6586229.1 (Zinc finger matrin-type protein 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367.5 bits (942), Expect = 7.6e-98
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1    MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
            MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQE ERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1304 MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 1363

Query: 61   DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
            DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 1364 DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 1423

Query: 121  ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
            ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKEKKKEKAAE+
Sbjct: 1424 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAED 1483

Query: 181  EPEVDPDVAAMMGFGGFRSSKK 203
            EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 1484 EPEVDPDVAAMMGFGGFRSSKK 1505

[Close]

BLAST of HG10006364 vs. ExPASy Swiss-Prot
Match: Q96NC0 (Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.8e-41
Identity = 100/188 (53.19%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 15  FRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTP 74
           FRRK+D++EY + A +R  +E E+   K    PV+R+ L+HRDY+VDLES+LGKT V+T 
Sbjct: 12  FRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKVDLESKLGKTIVITK 71

Query: 75  VAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLK 134
             P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L+QV++RFEV  
Sbjct: 72  TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV-N 131

Query: 135 KRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGF 194
           K+K      + D EER+ + ++EEE+ K  ++E++KEKK+    +   E D ++AA+MGF
Sbjct: 132 KKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGF 191

Query: 195 GGFRSSKK 203
            GF S+KK
Sbjct: 192 SGFGSTKK 197

[Close]

BLAST of HG10006364 vs. ExPASy Swiss-Prot
Match: Q9CPW7 (Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.8e-41
Identity = 100/188 (53.19%), Postives = 139/188 (73.94%), Query Frame = 0


Query: 15  FRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTP 74
           FRRK+D++EY + A +R  +E E+   K    PV+R+ L+HRDY+VDLES+LGKT V+T 
Sbjct: 12  FRRKWDKDEYEKLAEKRLTEEREKKDGK-PVQPVKRELLRHRDYKVDLESKLGKTIVITK 71

Query: 75  VAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLK 134
             P S+  GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L+QV++RFEV  
Sbjct: 72  TTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKKRFEV-N 131

Query: 135 KRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGF 194
           K+K      + D EER+ + ++EEE+ K  ++E++KEKK+    +   E D ++AA+MGF
Sbjct: 132 KKKMEEKQKDYDFEERMKELREEEEKAKAYKKEKQKEKKRRAEEDLTFEEDDEMAAVMGF 191

Query: 195 GGFRSSKK 203
            GF S+KK
Sbjct: 192 SGFGSTKK 197

[Close]

BLAST of HG10006364 vs. ExPASy Swiss-Prot
Match: P34670 (Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=6239 GN=snu-23 PE=3 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 9.2e-30
Identity = 83/215 (38.60%), Postives = 141/215 (65.58%), Query Frame = 0


Query: 4   TSNTAAGVDNTFRRKFDREEYLERAR-----EREKQEVERVKSKLKGPPVQRKPLKHRDY 63
           + + A+G ++  RR +D +EY   A+     E+E +++   K K   P V+R+ L+ R+Y
Sbjct: 7   SGSQASGTNH--RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREY 66

Query: 64  EVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRV 123
           +VDL+S++GK+ V+T   P ++  G+YC VC+CVVKDS N+LDHINGK HQR +GMSM+ 
Sbjct: 67  KVDLDSKVGKSVVITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKT 126

Query: 124 ERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQR--------KRERRERKK 183
           +++++  V+ERF+++K +K       Q   E++L+  QEEE R        K + R+RK+
Sbjct: 127 KKSTVADVRERFKLMKDKKEREKKEAQ--VEQLLEDVQEEEARMADFKKDKKTDNRKRKR 186

Query: 184 EKKKEKAAEEEPE---VDPDVAAMMGFGGFRSSKK 203
           + +K++  +++ +   +DP++ AMMGF GF +SK+
Sbjct: 187 DTRKDEEEDDDEDDSGLDPEIRAMMGFSGFSTSKR 217

[Close]

BLAST of HG10006364 vs. ExPASy TrEMBL
Match: A0A1S3BWZ9 (zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.8e-100
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. ExPASy TrEMBL
Match: A0A0A0LM02 (U1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033890 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 8.7e-100
Identity = 200/202 (99.01%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQEV+RVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. ExPASy TrEMBL
Match: A0A6J1HQF6 (zinc finger matrin-type protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111465669 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQE ERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKE+KKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKERKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. ExPASy TrEMBL
Match: A0A6J1FDL7 (zinc finger matrin-type protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111444413 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.7e-98
Identity = 196/202 (97.03%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSNTAAGVDNTFRRKFDREEYLERAR+REKQE ERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DL SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLNSRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQ+EEEQRKRERRERKKEKKKEKAAE+
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIIKQQEEEEQRKRERRERKKEKKKEKAAED 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPEVDPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEVDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. ExPASy TrEMBL
Match: A0A6J1DQA3 (zinc finger matrin-type protein 2 OS=Momordica charantia OX=3673 GN=LOC111023331 PE=4 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.8e-97
Identity = 194/202 (96.04%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEV 60
           MAHTSN AAGVDNTFRRKFDREEYLERAR+REKQE ERVKSKLKGPPVQRKPLKHRDYEV
Sbjct: 1   MAHTSNPAAGVDNTFRRKFDREEYLERARDREKQEAERVKSKLKGPPVQRKPLKHRDYEV 60

Query: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120
           DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER
Sbjct: 61  DLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVER 120

Query: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEE 180
           ASLEQVQERFEVLKKRKTPGSFTEQDLEERI+KQQQEEE+R+R+RRERKKEKKKEKAAEE
Sbjct: 121 ASLEQVQERFEVLKKRKTPGSFTEQDLEERIVKQQQEEEERRRQRRERKKEKKKEKAAEE 180

Query: 181 EPEVDPDVAAMMGFGGFRSSKK 203
           EPE+DPDVAAMMGFGGFRSSKK
Sbjct: 181 EPEIDPDVAAMMGFGGFRSSKK 202

[Close]

BLAST of HG10006364 vs. TAIR 10
Match: AT3G05760.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 308.1 bits (788), Expect = 5.1e-84
Identity = 164/199 (82.41%), Postives = 181/199 (90.95%), Query Frame = 0


Query: 4   TSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLE 63
           +SNT  GVDNTFR+KFD EE+ ERAREREK+E +R KS+ KGPPVQR PLKHRDY VDLE
Sbjct: 3   SSNTTTGVDNTFRKKFDVEEFKERAREREKKESDRSKSRSKGPPVQRAPLKHRDYHVDLE 62

Query: 64  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123
           SRLGKTQVVTPVAPLSQQAGY+C VC+CVVKDSANYLDHINGKKHQRALGMSMRVER+SL
Sbjct: 63  SRLGKTQVVTPVAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSL 122

Query: 124 EQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPE 183
           EQVQERFEVLKKRK PG+FTEQDL+ERI KQQ+EEE+ KR+RRE+KKEKKK K  EEEPE
Sbjct: 123 EQVQERFEVLKKRKAPGTFTEQDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVEEEPE 182

Query: 184 VDPDVAAMMGFGGFRSSKK 203
           +DP+VA MMGFGGF SSKK
Sbjct: 183 MDPEVAEMMGFGGFGSSKK 201

[Close]

BLAST of HG10006364 vs. TAIR 10
Match: AT3G05760.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 241.9 bits (616), Expect = 4.5e-64
Identity = 122/145 (84.14%), Postives = 133/145 (91.72%), Query Frame = 0


Query: 4   TSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLE 63
           +SNT  GVDNTFR+KFD EE+ ERAREREK+E +R KS+ KGPPVQR PLKHRDY VDLE
Sbjct: 3   SSNTTTGVDNTFRKKFDVEEFKERAREREKKESDRSKSRSKGPPVQRAPLKHRDYHVDLE 62

Query: 64  SRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 123
           SRLGKTQVVTPVAPLSQQAGY+C VC+CVVKDSANYLDHINGKKHQRALGMSMRVER+SL
Sbjct: 63  SRLGKTQVVTPVAPLSQQAGYFCRVCDCVVKDSANYLDHINGKKHQRALGMSMRVERSSL 122

Query: 124 EQVQERFEVLKKRKTPGSFTEQDLE 149
           EQVQERFEVLKKRK PG+FTEQ+ E
Sbjct: 123 EQVQERFEVLKKRKAPGTFTEQERE 147

The following BLAST results are available for this feature:

BLAST of HG10006364 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453709.1	3.6e-100	100.00	PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo] >XP_008453717.1 PRED...	[more]
XP_011648855.1	1.8e-99	99.01	zinc finger matrin-type protein 2 [Cucumis sativus] >XP_011648858.1 zinc finger ...	[more]
XP_023536719.1	3.4e-98	97.52	zinc finger matrin-type protein 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022965943.1	7.6e-98	97.03	zinc finger matrin-type protein 2 [Cucurbita maxima]	[more]
KAG6586229.1	7.6e-98	97.03	Zinc finger matrin-type protein 2, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10006364 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q96NC0	6.8e-41	53.19	Zinc finger matrin-type protein 2 OS=Homo sapiens OX=9606 GN=ZMAT2 PE=1 SV=1	[more]
Q9CPW7	6.8e-41	53.19	Zinc finger matrin-type protein 2 OS=Mus musculus OX=10090 GN=Zmat2 PE=2 SV=1	[more]
P34670	9.2e-30	38.60	Putative zinc finger matrin-type protein snu-23 OS=Caenorhabditis elegans OX=623...	[more]

BLAST of HG10006364 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BWZ9	1.8e-100	100.00	zinc finger matrin-type protein 2 OS=Cucumis melo OX=3656 GN=LOC103494358 PE=4 S...	[more]
A0A0A0LM02	8.7e-100	99.01	U1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G033890 PE=...	[more]
A0A6J1HQF6	3.7e-98	97.03	zinc finger matrin-type protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111465669 PE...	[more]
A0A6J1FDL7	3.7e-98	97.03	zinc finger matrin-type protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111444413 ...	[more]
A0A6J1DQA3	1.8e-97	96.04	zinc finger matrin-type protein 2 OS=Momordica charantia OX=3673 GN=LOC111023331...	[more]

BLAST of HG10006364 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05760.1	5.1e-84	82.41	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT3G05760.2	4.5e-64	84.14	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42
None	No IPR available	COILS	Coil	Coil	coord: 144..181
None	No IPR available	COILS	Coil	Coil	coord: 116..136
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 78..116 e-value: 6.6E-7 score: 30.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..52
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 81..115 e-value: 2.0E-9 score: 47.3
IPR022755	Zinc finger, double-stranded RNA binding	PFAM	PF12171	zf-C2H2_jaz	coord: 84..109 e-value: 1.8E-6 score: 28.0
IPR040107	U4/U6.U5 small nuclear ribonucleoprotein component Snu23	PANTHER	PTHR45986	ZINC FINGER MATRIN-TYPE PROTEIN 2	coord: 7..202
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 79..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006364.1	HG10006364.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding