HG10006261 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006261
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-H2 finger protein ATL56
Location	Chr07: 16576162 .. 16576686 (-)
RNA-Seq Expression	HG10006261
Synteny	HG10006261

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTTCAAGATTCCGCCGCCGTGAGCGGCGACCCACTTCCCCATCCACCGCCATCCCCACCGCCGAAGCCAGAGACTCAACTCCTCTCTCTGCTCCTCAAGGTCACAATCATGATCCTCTTATCCTCTCTCTTCTTTGTCTTCCTCGGCCTCGCCACCGCCCTCCTTCTAATCCACCTCTGCGTCGCCAGCGCCCTCCACCGTCGCCGTGCCCAATTCCCCGATTCTTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCCCAAATTGACTGCTCTATTTGCCTCGATGGGTTTAGAAAAGACCAGTGGTGTAGGAAACTTAGTGGGTGTGGCCATGTTTATCATCGGAAATGTATCGATTCGTGGTTAGTTAGGGTATCTGCTTGCCCCCTTTGCCGACGATGTGTTCGATTGGATATGGAAGAACGTGAAATTGATTGTGTAAGTTCTCGGAACTATGAGCTTTTGTATGCTCTGTAA

mRNA sequence

ATGCCCTTTCAAGATTCCGCCGCCGTGAGCGGCGACCCACTTCCCCATCCACCGCCATCCCCACCGCCGAAGCCAGAGACTCAACTCCTCTCTCTGCTCCTCAAGGTCACAATCATGATCCTCTTATCCTCTCTCTTCTTTGTCTTCCTCGGCCTCGCCACCGCCCTCCTTCTAATCCACCTCTGCGTCGCCAGCGCCCTCCACCGTCGCCGTGCCCAATTCCCCGATTCTTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCCCAAATTGACTGCTCTATTTGCCTCGATGGGTTTAGAAAAGACCAGTGGTGTAGGAAACTTAGTGGGTGTGGCCATGTTTATCATCGGAAATGTATCGATTCGTGGTTAGTTAGGGTATCTGCTTGCCCCCTTTGCCGACGATGTGTTCGATTGGATATGGAAGAACGTGAAATTGATTGTGTAAGTTCTCGGAACTATGAGCTTTTGTATGCTCTGTAA

Coding sequence (CDS)

ATGCCCTTTCAAGATTCCGCCGCCGTGAGCGGCGACCCACTTCCCCATCCACCGCCATCCCCACCGCCGAAGCCAGAGACTCAACTCCTCTCTCTGCTCCTCAAGGTCACAATCATGATCCTCTTATCCTCTCTCTTCTTTGTCTTCCTCGGCCTCGCCACCGCCCTCCTTCTAATCCACCTCTGCGTCGCCAGCGCCCTCCACCGTCGCCGTGCCCAATTCCCCGATTCTTCATCTGGGTTCTCCCATCGTGACCTCAAAAAGCTCCTCCAGTTCCGATTCTCCAATTGGGTCAATCCCCATTCCCAAATTGACTGCTCTATTTGCCTCGATGGGTTTAGAAAAGACCAGTGGTGTAGGAAACTTAGTGGGTGTGGCCATGTTTATCATCGGAAATGTATCGATTCGTGGTTAGTTAGGGTATCTGCTTGCCCCCTTTGCCGACGATGTGTTCGATTGGATATGGAAGAACGTGAAATTGATTGTGTAAGTTCTCGGAACTATGAGCTTTTGTATGCTCTGTAA

Protein sequence

MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIHLCVASALHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL

Homology

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BLAST of HG10006261 vs. NCBI nr
Match: XP_038889631.1 (RING-H2 finger protein ATL56-like [Benincasa hispida])

HSP 1 Score: 319.3 bits (817), Expect = 2.0e-83
Identity = 161/180 (89.44%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQDSAAVSGDPLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQDSAAVSGDPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASAL------HRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASAL      HRRRAQF DSS+GFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRHRRFHRRRAQFSDSSTGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           K QWCRKL GCGHVYHRKCIDSWLVRVSACPLCRRCVRLD EE EIDCVSS NYELLYAL
Sbjct: 121 KGQWCRKLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDKEELEIDCVSSPNYELLYAL 178

[Close]

BLAST of HG10006261 vs. NCBI nr
Match: XP_008452306.1 (PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa] >TYK10847.1 RING-H2 finger protein ATL56 [Cucumis melo var. makuwa])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSGDPLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQHSAAVSGDPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHR------RRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHR      RR+Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of HG10006261 vs. NCBI nr
Match: XP_004149098.1 (RING-H2 finger protein ATL56 [Cucumis sativus])

HSP 1 Score: 314.3 bits (804), Expect = 6.5e-82
Identity = 157/180 (87.22%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSG PLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQPSAAVSGHPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHRRR------AQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHRRR      +Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of HG10006261 vs. NCBI nr
Match: XP_022929717.1 (RING-H2 finger protein ATL56-like [Cucurbita moschata])

HSP 1 Score: 303.5 bits (776), Expect = 1.2e-78
Identity = 147/174 (84.48%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP QDSAA SGDPLPHPP  PPPKPE +LLSLLLKV +MI  ++LFF+FLGLATALLL H
Sbjct: 1   MPLQDSAAGSGDPLPHPP--PPPKPEAKLLSLLLKVAVMIFFTTLFFIFLGLATALLLFH 60

Query: 61  LCVASALHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCR 120
           LC+ASALHRRRAQ+PDSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRK QWCR
Sbjct: 61  LCIASALHRRRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKGQWCR 120

Query: 121 KLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           KL GCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEE +I+CVS RNYE+LYAL
Sbjct: 121 KLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEILYAL 172

[Close]

BLAST of HG10006261 vs. NCBI nr
Match: XP_023546946.1 (RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.1 bits (775), Expect = 1.5e-78
Identity = 148/174 (85.06%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP QDSAA SGD LPHPP  PPPKPE +LLSLLLKV +MI  ++LFFVFLGLATALLL H
Sbjct: 1   MPLQDSAAASGDSLPHPP--PPPKPEGKLLSLLLKVAVMIFFTTLFFVFLGLATALLLFH 60

Query: 61  LCVASALHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCR 120
           LC+ASALHRRRAQ+PDSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRK QWCR
Sbjct: 61  LCIASALHRRRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKGQWCR 120

Query: 121 KLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           KL GCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEE +I+CVSSRNYE+LYAL
Sbjct: 121 KLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSSRNYEILYAL 172

[Close]

BLAST of HG10006261 vs. ExPASy Swiss-Prot
Match: Q9ZV51 (RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-32
Identity = 83/181 (45.86%), Postives = 111/181 (61.33%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP  ++  +SG+P    P  PPPKP+T++LSL L   IM  +  LF V +G+A+ L+L  
Sbjct: 1   MPPTNNYRISGEPPSTTPSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPL 60

Query: 61  LCVASALH-----RRRAQFPDSSSGFSHRDLKKLLQFRFSN-WVNPHSQIDCSICLDGFR 120
           L   S+LH     RRR +  +SS G S R +KKL QF+FS        + DC +C DGFR
Sbjct: 61  L--LSSLHRHHRRRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRL---DMEEREI-DCVSSRNYEL 172
           + QWCR L GCGHV+HRKC+D+WL++ S CP+CR  VRL   D +E E+  C   R   L
Sbjct: 121 QGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRLWEEDPQEGELWRCFGHRRSSL 179

[Close]

BLAST of HG10006261 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.7e-21
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVF----LGLATAL 60
           +P+  S +    P P PP +      T++LS  L   IMI ++   F+F    LG     
Sbjct: 5   IPYDGSISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFF 64

Query: 61  LLIHLCVASALHR-RRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRK 120
                   +  HR RR +  + S G S R +K+L QF++    + +   DC +C+DGFR+
Sbjct: 65  AFYWFLQRNYRHRLRRHRRHEYSDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQ 124

Query: 121 DQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCR 149
            QWCRKL  CGHV+HRKC+D WL++VS CP+CR
Sbjct: 125 GQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of HG10006261 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.2e-08
Identity = 48/162 (29.63%), Postives = 67/162 (41.36%), Query Frame = 0


Query: 16  HPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLI---HLCVASALHRRRA 75
           +PPP PPP P  + LSLLL  +I ++ S + F+FL     L +     +  AS       
Sbjct: 25  YPPPPPPPPPPRE-LSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTN 84

Query: 76  QFPDSSS------------------GFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 135
           Q  D                     G     +  +    F          +CS+CL+ F 
Sbjct: 85  QQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFE 144

Query: 136 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDME 157
           +D+  R L  C H +H  CID+WL+    CPLCR  V L  E
Sbjct: 145 EDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITE 185

[Close]

BLAST of HG10006261 vs. ExPASy Swiss-Prot
Match: Q5EAE9 (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-08
Identity = 49/172 (28.49%), Postives = 75/172 (43.60%), Query Frame = 0


Query: 10  SGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIHLCVASALHR 69
           S  P P PPPSPPP+      SL+  + ++I + + FF      T LLL++  V     R
Sbjct: 33  SDTPPPLPPPSPPPR-HNFTSSLMPGIAVVIAVLTAFFSL----TFLLLLY--VKHCKRR 92

Query: 70  RRAQFPD------------------------SSSGFSHRDLKKLLQFRFSNWVNPHSQID 129
             + + +                         +SG     ++ L  FRF         ++
Sbjct: 93  NGSVYVNHPQRFAITRYGGGYYNGGGVVGGRKNSGIDRSVIESLPVFRFGALSGHKDGLE 152

Query: 130 CSICLDGFRKDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE 158
           C++CL  F   +  R L  C H +H +C+D+WL   S CPLCR   R+D E+
Sbjct: 153 CAVCLARFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR--YRVDPED 195

[Close]

BLAST of HG10006261 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-07
Identity = 50/149 (33.56%), Postives = 69/149 (46.31%), Query Frame = 0


Query: 17  PPPSPPPKPETQLLSLLLKVT-----IMILLSSLFFV--FLGLATALLLI--------HL 76
           PPP  P K  T L +L  K+T     I+I+LS +FF+   L +    LL         + 
Sbjct: 20  PPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFLLTPSRESREDYF 79

Query: 77  CVASALHRRRAQ-FPDSSSGFSHRDLKKLLQFRFSNWVN-PHSQIDCSICLDGFRKDQWC 136
              +AL  +  Q F    SG     +  L  F + + V    S  DC +CL  F  +   
Sbjct: 80  DNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKL 139

Query: 137 RKLSGCGHVYHRKCIDSWLVRVSACPLCR 149
           R L  C H +H +CID+WL+  S CPLCR
Sbjct: 140 RLLPKCSHAFHVECIDTWLLSHSTCPLCR 168

[Close]

BLAST of HG10006261 vs. ExPASy TrEMBL
Match: A0A5D3CFV1 (RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00160 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.9e-83
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSGDPLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQHSAAVSGDPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHR------RRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHR      RR+Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of HG10006261 vs. ExPASy TrEMBL
Match: A0A1S3BTK8 (RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.9e-83
Identity = 158/180 (87.78%), Postives = 165/180 (91.67%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSGDPLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 1   MPFQHSAAVSGDPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 60

Query: 61  LCVASALHR------RRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHR      RR+Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 61  LCVASALHRRRRFHSRRSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 121 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 178

[Close]

BLAST of HG10006261 vs. ExPASy TrEMBL
Match: A0A0A0LJ61 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.2e-82
Identity = 157/180 (87.22%), Postives = 164/180 (91.11%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MPFQ SAAVSG PLPHPP  PPPKPETQLLSLLLK+ IMILL++LFFVFLGLATALLLIH
Sbjct: 56  MPFQPSAAVSGHPLPHPP--PPPKPETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIH 115

Query: 61  LCVASALHRRR------AQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 120
           LCVASALHRRR      +Q+ DSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR
Sbjct: 116 LCVASALHRRRRFHSRHSQYSDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 175

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           K QWCR+L GCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEE EIDCVSSRN+EL YAL
Sbjct: 176 KGQWCRRLGGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEHEIDCVSSRNFELFYAL 233

[Close]

BLAST of HG10006261 vs. ExPASy TrEMBL
Match: A0A6J1ENH8 (RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111436213 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.6e-79
Identity = 147/174 (84.48%), Postives = 158/174 (90.80%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP QDSAA SGDPLPHPP  PPPKPE +LLSLLLKV +MI  ++LFF+FLGLATALLL H
Sbjct: 1   MPLQDSAAGSGDPLPHPP--PPPKPEAKLLSLLLKVAVMIFFTTLFFIFLGLATALLLFH 60

Query: 61  LCVASALHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCR 120
           LC+ASALHRRRAQ+PDSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRK QWCR
Sbjct: 61  LCIASALHRRRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKGQWCR 120

Query: 121 KLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           KL GCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEE +I+CVS RNYE+LYAL
Sbjct: 121 KLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEILYAL 172

[Close]

BLAST of HG10006261 vs. ExPASy TrEMBL
Match: A0A6J1K548 (RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111492378 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.6e-78
Identity = 147/174 (84.48%), Postives = 157/174 (90.23%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP QDSAA SG PLPHPP  PPPKPE +LLSLLLKVT+MI  ++LFFVFLGLATALLL H
Sbjct: 1   MPLQDSAAGSGYPLPHPP--PPPKPEAKLLSLLLKVTVMIFFTTLFFVFLGLATALLLFH 60

Query: 61  LCVASALHRRRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRKDQWCR 120
           LC+ASALHRRRAQ+PDSSSGFS RDLKKLLQF+FSN VNPHSQIDCSICLDGFRK QWCR
Sbjct: 61  LCIASALHRRRAQYPDSSSGFSRRDLKKLLQFQFSNGVNPHSQIDCSICLDGFRKGQWCR 120

Query: 121 KLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDMEEREIDCVSSRNYELLYAL 175
           KL GCGHVYHRKCIDSWLVRVS CPLCRRCVRLDMEE +I+CVS RNYE+ YAL
Sbjct: 121 KLGGCGHVYHRKCIDSWLVRVSTCPLCRRCVRLDMEEHKINCVSPRNYEIFYAL 172

[Close]

BLAST of HG10006261 vs. TAIR 10
Match: AT2G18670.1 (RING/U-box superfamily protein )

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-33
Identity = 83/181 (45.86%), Postives = 111/181 (61.33%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIH 60
           MP  ++  +SG+P    P  PPPKP+T++LSL L   IM  +  LF V +G+A+ L+L  
Sbjct: 1   MPPTNNYRISGEPPSTTPSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPL 60

Query: 61  LCVASALH-----RRRAQFPDSSSGFSHRDLKKLLQFRFSN-WVNPHSQIDCSICLDGFR 120
           L   S+LH     RRR +  +SS G S R +KKL QF+FS        + DC +C DGFR
Sbjct: 61  L--LSSLHRHHRRRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDCVVCFDGFR 120

Query: 121 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRL---DMEEREI-DCVSSRNYEL 172
           + QWCR L GCGHV+HRKC+D+WL++ S CP+CR  VRL   D +E E+  C   R   L
Sbjct: 121 QGQWCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRLWEEDPQEGELWRCFGHRRSSL 179

[Close]

BLAST of HG10006261 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-22
Identity = 59/153 (38.56%), Postives = 85/153 (55.56%), Query Frame = 0


Query: 1   MPFQDSAAVSGDPLPHPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVF----LGLATAL 60
           +P+  S +    P P PP +      T++LS  L   IMI ++   F+F    LG     
Sbjct: 5   IPYDGSISREPSPSPPPPKANTKNLPTKILSNFLIGLIMIPVAITAFIFILTSLGFTFFF 64

Query: 61  LLIHLCVASALHR-RRAQFPDSSSGFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFRK 120
                   +  HR RR +  + S G S R +K+L QF++    + +   DC +C+DGFR+
Sbjct: 65  AFYWFLQRNYRHRLRRHRRHEYSDGLSPRCVKRLPQFKYCEPSSEYGGDDCVVCIDGFRQ 124

Query: 121 DQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCR 149
            QWCRKL  CGHV+HRKC+D WL++VS CP+CR
Sbjct: 125 GQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of HG10006261 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 48/162 (29.63%), Postives = 67/162 (41.36%), Query Frame = 0


Query: 16  HPPPSPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLI---HLCVASALHRRRA 75
           +PPP PPP P  + LSLLL  +I ++ S + F+FL     L +     +  AS       
Sbjct: 25  YPPPPPPPPPPRE-LSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTN 84

Query: 76  QFPDSSS------------------GFSHRDLKKLLQFRFSNWVNPHSQIDCSICLDGFR 135
           Q  D                     G     +  +    F          +CS+CL+ F 
Sbjct: 85  QQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFE 144

Query: 136 KDQWCRKLSGCGHVYHRKCIDSWLVRVSACPLCRRCVRLDME 157
           +D+  R L  C H +H  CID+WL+    CPLCR  V L  E
Sbjct: 145 EDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITE 185

[Close]

BLAST of HG10006261 vs. TAIR 10
Match: AT2G18650.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.8e-08
Identity = 50/149 (33.56%), Postives = 69/149 (46.31%), Query Frame = 0


Query: 17  PPPSPPPKPETQLLSLLLKVT-----IMILLSSLFFV--FLGLATALLLI--------HL 76
           PPP  P K  T L +L  K+T     I+I+LS +FF+   L +    LL         + 
Sbjct: 20  PPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFLLTPSRESREDYF 79

Query: 77  CVASALHRRRAQ-FPDSSSGFSHRDLKKLLQFRFSNWVN-PHSQIDCSICLDGFRKDQWC 136
              +AL  +  Q F    SG     +  L  F + + V    S  DC +CL  F  +   
Sbjct: 80  DNVTALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKL 139

Query: 137 RKLSGCGHVYHRKCIDSWLVRVSACPLCR 149
           R L  C H +H +CID+WL+  S CPLCR
Sbjct: 140 RLLPKCSHAFHVECIDTWLLSHSTCPLCR 168

[Close]

BLAST of HG10006261 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-08
Identity = 38/137 (27.74%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 20  SPPPKPETQLLSLLLKVTIMILLSSLFFVFLGLATALLLIHLCVASALHRRRAQFPDSSS 79
           +PPP+P  ++++   +  ++++LS+L    + +A  L  +  C            P  + 
Sbjct: 12  APPPQPSEEMIA--AESDMVVILSALLCALICVA-GLAAVVRCAWLRRFTAGGDSPSPNK 71

Query: 80  GFSHRDLKKLLQFRFS-------NWVNPHSQIDCSICLDGFRKDQWCRKLSGCGHVYHRK 139
           G   + L+ L +  F+                +C+ICL  F   +  R L  CGH +H +
Sbjct: 72  GLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVE 131

Query: 140 CIDSWLVRVSACPLCRR 150
           CID WLV  S+CP CRR
Sbjct: 132 CIDKWLVSRSSCPSCRR 145

The following BLAST results are available for this feature:

BLAST of HG10006261 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889631.1	2.0e-83	89.44	RING-H2 finger protein ATL56-like [Benincasa hispida]	[more]
XP_008452306.1	1.0e-82	87.78	PREDICTED: RING-H2 finger protein ATL56 [Cucumis melo] >KAA0048646.1 RING-H2 fin...	[more]
XP_004149098.1	6.5e-82	87.22	RING-H2 finger protein ATL56 [Cucumis sativus]	[more]
XP_022929717.1	1.2e-78	84.48	RING-H2 finger protein ATL56-like [Cucurbita moschata]	[more]
XP_023546946.1	1.5e-78	85.06	RING-H2 finger protein ATL56-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10006261 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZV51	3.8e-32	45.86	RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1	[more]
Q9M0C3	6.7e-21	38.56	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
Q9LX93	2.2e-08	29.63	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q5EAE9	6.5e-08	28.49	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2	[more]
Q9ZV53	2.5e-07	33.56	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]

BLAST of HG10006261 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFV1	4.9e-83	87.78	RING-H2 finger protein ATL56 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BTK8	4.9e-83	87.78	RING-H2 finger protein ATL56 OS=Cucumis melo OX=3656 GN=LOC103493368 PE=4 SV=1	[more]
A0A0A0LJ61	3.2e-82	87.22	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G047820 P...	[more]
A0A6J1ENH8	5.6e-79	84.48	RING-H2 finger protein ATL56-like OS=Cucurbita moschata OX=3662 GN=LOC111436213 ...	[more]
A0A6J1K548	3.6e-78	84.48	RING-H2 finger protein ATL56-like OS=Cucurbita maxima OX=3661 GN=LOC111492378 PE...	[more]

BLAST of HG10006261 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18670.1	2.7e-33	45.86	RING/U-box superfamily protein	[more]
AT4G30370.1	4.8e-22	38.56	RING/U-box superfamily protein	[more]
AT5G10380.1	1.6e-09	29.63	RING/U-box superfamily protein	[more]
AT2G18650.1	1.8e-08	33.56	RING/U-box superfamily protein	[more]
AT2G17450.1	3.0e-08	27.74	RING-H2 finger A3A	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 106..147 e-value: 6.6E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 105..148 e-value: 4.9E-12 score: 46.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 106..148 score: 12.504031
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 81..157 e-value: 5.0E-18 score: 66.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 4..173
None	No IPR available	PANTHER	PTHR46539:SF9	RING-H2 FINGER PROTEIN ATL56	coord: 4..173
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006261.1	HG10006261.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane