HG10006162 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10006162
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionBnaA10g11140D protein
LocationChr07: 14797589 .. 14797777 (-)
RNA-Seq ExpressionHG10006162
SyntenyHG10006162
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGCAAGGAGGAAAAGGAGCTGGGTCGGCGGCAGGCCACCGGCACGTGCCCGTCATGTGGCGGCAAAGTTCAAGCTCTGGACGTGGAGAGAAAATGGAGGCTCTGTTTTGTTCCACTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTAACGTGTGGTCGTCGTTTGGAGTTGAATCATTAG

mRNA sequence

ATGTTTTGCAAGGAGGAAAAGGAGCTGGGTCGGCGGCAGGCCACCGGCACGTGCCCGTCATGTGGCGGCAAAGTTCAAGCTCTGGACGTGGAGAGAAAATGGAGGCTCTGTTTTGTTCCACTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTAACGTGTGGTCGTCGTTTGGAGTTGAATCATTAG

Coding sequence (CDS)

ATGTTTTGCAAGGAGGAAAAGGAGCTGGGTCGGCGGCAGGCCACCGGCACGTGCCCGTCATGTGGCGGCAAAGTTCAAGCTCTGGACGTGGAGAGAAAATGGAGGCTCTGTTTTGTTCCACTCTGTTTCAAAATCAAGAGGAAATATTACTGTGTAACGTGTGGTCGTCGTTTGGAGTTGAATCATTAG

Protein sequence

MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLELNH
Homology
BLAST of HG10006162 vs. NCBI nr
Match: XP_008451097.1 (PREDICTED: uncharacterized protein LOC103492473 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 9.6e-28
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FCKEEKELGRRQATGTCPSCGGKVQA+DVERKWRLCFVPLCFKIKRKYYC+ CGRRLEL
Sbjct: 2  LFCKEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCLICGRRLEL 61

Query: 61 NH 63
           H
Sbjct: 62 YH 63

BLAST of HG10006162 vs. NCBI nr
Match: XP_038891000.1 (uncharacterized protein LOC120080412 [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 1.6e-27
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FC EEKELGRRQATGTCPSCGGKVQA+DVERKWRLCFVPLCFKIKRKYYCV CGRRLEL
Sbjct: 2  LFCNEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCVMCGRRLEL 61

Query: 61 NH 63
           H
Sbjct: 62 YH 63

BLAST of HG10006162 vs. NCBI nr
Match: XP_011648964.1 (uncharacterized protein LOC105434563 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FCKEEKELGR+QATGTCPSCGGKVQA+DVER+WR CFVPLCFKIKRKYYC+ CGRRLEL
Sbjct: 2  LFCKEEKELGRQQATGTCPSCGGKVQAVDVERRWRFCFVPLCFKIKRKYYCLICGRRLEL 61

Query: 61 NH 63
           H
Sbjct: 62 YH 63

BLAST of HG10006162 vs. NCBI nr
Match: XP_022929732.1 (uncharacterized protein LOC111436231 [Cucurbita moschata] >XP_022996867.1 uncharacterized protein LOC111491984 [Cucurbita maxima])

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FCKE+KELGRRQA G CP CGGKV+A+DVERKWRLC  PLCFKIKRKYYCV CGRRLEL
Sbjct: 2  LFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLEL 61

BLAST of HG10006162 vs. NCBI nr
Match: XP_023547069.1 (uncharacterized protein LOC111805987 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.1 bits (292), Expect = 5.5e-23
Identity = 49/60 (81.67%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FCKE+KELGRRQA G CP CGGKV+A+DVERKWRLC  PLCFKIKRKYYC+ CGRRLEL
Sbjct: 2  LFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCLMCGRRLEL 61

BLAST of HG10006162 vs. ExPASy TrEMBL
Match: A0A1S3BRU0 (uncharacterized protein LOC103492473 OS=Cucumis melo OX=3656 GN=LOC103492473 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.7e-28
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FCKEEKELGRRQATGTCPSCGGKVQA+DVERKWRLCFVPLCFKIKRKYYC+ CGRRLEL
Sbjct: 2  LFCKEEKELGRRQATGTCPSCGGKVQAVDVERKWRLCFVPLCFKIKRKYYCLICGRRLEL 61

Query: 61 NH 63
           H
Sbjct: 62 YH 63

BLAST of HG10006162 vs. ExPASy TrEMBL
Match: A0A6J1K383 (uncharacterized protein LOC111491984 OS=Cucurbita maxima OX=3661 GN=LOC111491984 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FCKE+KELGRRQA G CP CGGKV+A+DVERKWRLC  PLCFKIKRKYYCV CGRRLEL
Sbjct: 2  LFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLEL 61

BLAST of HG10006162 vs. ExPASy TrEMBL
Match: A0A6J1ENJ0 (uncharacterized protein LOC111436231 OS=Cucurbita moschata OX=3662 GN=LOC111436231 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-23
Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FCKE+KELGRRQA G CP CGGKV+A+DVERKWRLC  PLCFKIKRKYYCV CGRRLEL
Sbjct: 2  LFCKEDKELGRRQAMGRCPLCGGKVEAVDVERKWRLCLAPLCFKIKRKYYCVMCGRRLEL 61

BLAST of HG10006162 vs. ExPASy TrEMBL
Match: A0A6J1D838 (uncharacterized protein LOC111018230 OS=Momordica charantia OX=3673 GN=LOC111018230 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.9e-22
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          +FCKEE EL RRQA+GTCPSCGGKV+A+DVERKWRL  VPLCFKIKRKY CV CGRRLEL
Sbjct: 2  IFCKEE-ELVRRQASGTCPSCGGKVEAVDVERKWRLFSVPLCFKIKRKYLCVMCGRRLEL 61

Query: 61 NH 63
          NH
Sbjct: 62 NH 62

BLAST of HG10006162 vs. ExPASy TrEMBL
Match: A0A067J9B5 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06884 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.0e-19
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 0

Query: 4  KEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLELNH 63
          +EEKELGR+QA G+CP CGGKVQA+DVE KW  CF+P+C+KIKRKY+C  C RRLEL H
Sbjct: 9  EEEKELGRQQAPGSCPYCGGKVQAMDVETKWSFCFLPICYKIKRKYFCTLCARRLELCH 67

BLAST of HG10006162 vs. TAIR 10
Match: AT5G57123.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G29905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 4.9e-22
Identity = 44/59 (74.58%), Postives = 48/59 (81.36%), Query Frame = 0

Query: 4  KEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLELNH 63
          +EE ELGR+QA G+CP CGGKVQ LDVERKW  CFVPLCFKIKRKY C +C RRL L H
Sbjct: 9  EEETELGRQQAPGSCPYCGGKVQMLDVERKWMFCFVPLCFKIKRKYSCSSCDRRLVLYH 67

BLAST of HG10006162 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 2.5e-18
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0

Query: 1  MFCKEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRLEL 60
          ++ +E+ ELGR+QA G CP CGGKV A+D+E KW  CF+PLCFK+KRKY C +C R L L
Sbjct: 6  VYHEEKTELGRQQAPGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSCERHLVL 65

BLAST of HG10006162 vs. TAIR 10
Match: AT5G10695.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 6.5e-14
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0

Query: 4  KEEKELGRRQATGTCPSCGGKVQALDVERKWRLCFVPLCFKIKRKYYCVTCGRRL 59
          ++E+ +GR  A G CP CGG VQ +DV  +WR CFVPL  K KR++ C TCG+RL
Sbjct: 9  QDERVIGRYAAPGACPYCGGAVQVVDVNSQWRFCFVPLSNKSKRRHLCSTCGKRL 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008451097.19.6e-2891.94PREDICTED: uncharacterized protein LOC103492473 [Cucumis melo][more]
XP_038891000.11.6e-2791.94uncharacterized protein LOC120080412 [Benincasa hispida][more]
XP_011648964.11.8e-2687.10uncharacterized protein LOC105434563 [Cucumis sativus][more]
XP_022929732.12.5e-2383.33uncharacterized protein LOC111436231 [Cucurbita moschata] >XP_022996867.1 unchar... [more]
XP_023547069.15.5e-2381.67uncharacterized protein LOC111805987 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3BRU04.7e-2891.94uncharacterized protein LOC103492473 OS=Cucumis melo OX=3656 GN=LOC103492473 PE=... [more]
A0A6J1K3831.2e-2383.33uncharacterized protein LOC111491984 OS=Cucurbita maxima OX=3661 GN=LOC111491984... [more]
A0A6J1ENJ01.2e-2383.33uncharacterized protein LOC111436231 OS=Cucurbita moschata OX=3662 GN=LOC1114362... [more]
A0A6J1D8382.9e-2283.87uncharacterized protein LOC111018230 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A067J9B54.0e-1971.19Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06884 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G57123.14.9e-2274.58unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G29905.12.5e-1860.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G10695.16.5e-1454.55unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33320:SF13SUBFAMILY NOT NAMEDcoord: 4..60
NoneNo IPR availablePANTHERPTHR33320METHIONYL-TRNA SYNTHETASEcoord: 4..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10006162.1HG10006162.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004812 aminoacyl-tRNA ligase activity