HG10006153 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006153
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DExH-box ATP-dependent RNA helicase DExH10
Location	Chr07: 14519739 .. 14520159 (-)
RNA-Seq Expression	HG10006153
Synteny	HG10006153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGGTGCAAACAAATAACATATAGATTTACATATTTTCTGTCTTGCTCTTGCTTAAAAACCTGAACCCGTTTCAGTCTGCGAAAACCTAGGAAGTTTTTTTTTTTATTTTTTTTATTTTATATGTTTGTCACAATAATAAAGAAGCTTAGGCTTTTGGGATCCCTGAATAAAAGGGTTTATGCGTCCTTTTTTATGAGATTCTTCCATCATGTCTATGCTTTTTATTTTATTTGTCTTTTAATTCAGTTGCGTGCTGCTGCCAATGCTGTCGGGGAGGTAACCTTAGAGAGCAAGTTTTCTGCAGCCAGTGACAGCCTCCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAG

mRNA sequence

ATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTCGGGGAGGTAACCTTAGAGAGCAAGTTTTCTGCAGCCAGTGACAGCCTCCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAG

Coding sequence (CDS)

ATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTCGGGGAGGTAACCTTAGAGAGCAAGTTTTCTGCAGCCAGTGACAGCCTCCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAG

Protein sequence

MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL

Homology

[Close]

BLAST of HG10006153 vs. NCBI nr
Match: XP_038889177.1 (DExH-box ATP-dependent RNA helicase DExH10 isoform X1 [Benincasa hispida])

HSP 1 Score: 110.5 bits (275), Expect = 4.8e-21
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Sbjct: 957  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 1014

[Close]

BLAST of HG10006153 vs. NCBI nr
Match: XP_023546254.1 (DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 6.2e-21
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Sbjct: 957  MTDVFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 1014

[Close]

BLAST of HG10006153 vs. NCBI nr
Match: XP_022929766.1 (DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 6.2e-21
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Sbjct: 957  MTDVFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 1014

[Close]

BLAST of HG10006153 vs. NCBI nr
Match: XP_022996497.1 (DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita maxima])

HSP 1 Score: 110.2 bits (274), Expect = 6.2e-21
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Sbjct: 957  MTDVFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 1014

[Close]

BLAST of HG10006153 vs. NCBI nr
Match: XP_008450745.1 (PREDICTED: DExH-box ATP-dependent RNA helicase DExH10 [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 1.8e-20
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEV LESKFSAASDSLRRGIMFANSLYL
Sbjct: 957  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASDSLRRGIMFANSLYL 1014

[Close]

BLAST of HG10006153 vs. ExPASy Swiss-Prot
Match: Q9ZVW2 (DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana OX=3702 GN=HEN2 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 2.9e-21
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
           MTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AAS+SLRRGIMFANSLYL
Sbjct: 938 MTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESKFAAASESLRRGIMFANSLYL 995

[Close]

BLAST of HG10006153 vs. ExPASy Swiss-Prot
Match: P42285 (Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R I+FA SLYL
Sbjct: 985  MTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042

[Close]

BLAST of HG10006153 vs. ExPASy Swiss-Prot
Match: Q9CZU3 (Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-10
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R I+FA SLYL
Sbjct: 983  MTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1040

[Close]

BLAST of HG10006153 vs. ExPASy Swiss-Prot
Match: Q23223 (mRNA transport homolog 4 OS=Caenorhabditis elegans OX=6239 GN=mtr-4 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-08
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 2    TDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            TD+FEGSIIR+ RRL+E L ++  AA A+    LE KF  A  +L+R I+FA SLYL
Sbjct: 970  TDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDIVFAASLYL 1026

[Close]

BLAST of HG10006153 vs. ExPASy Swiss-Prot
Match: Q9XIF2 (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR4 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.8e-08
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 4   IFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
           +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R I+FA SLYL
Sbjct: 934 VFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSKIKRDIVFAASLYL 988

[Close]

BLAST of HG10006153 vs. ExPASy TrEMBL
Match: A0A6J1K235 (DExH-box ATP-dependent RNA helicase DExH10 OS=Cucurbita maxima OX=3661 GN=LOC111491727 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.0e-21
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Sbjct: 957  MTDVFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 1014

[Close]

BLAST of HG10006153 vs. ExPASy TrEMBL
Match: A0A6J1EP26 (DExH-box ATP-dependent RNA helicase DExH10 OS=Cucurbita moschata OX=3662 GN=LOC111436255 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.0e-21
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTD+FEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL
Sbjct: 957  MTDVFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 1014

[Close]

BLAST of HG10006153 vs. ExPASy TrEMBL
Match: A0A1S3BQY6 (DExH-box ATP-dependent RNA helicase DExH10 OS=Cucumis melo OX=3656 GN=LOC103492231 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.8e-21
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEV LESKFSAASDSLRRGIMFANSLYL
Sbjct: 957  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASDSLRRGIMFANSLYL 1014

[Close]

BLAST of HG10006153 vs. ExPASy TrEMBL
Match: A0A0A0LHE5 (DSHCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G068690 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 56/58 (96.55%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1  MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
          MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEV LESKFSAAS+SLRRGIMFANSLYL
Sbjct: 22 MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGIMFANSLYL 79

[Close]

BLAST of HG10006153 vs. ExPASy TrEMBL
Match: A0A7J7BVL7 (DSHCT domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G00673 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.7e-20
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 0


Query: 1   MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
           MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEV LESKF+AAS+SLRRGIMFANSLYL
Sbjct: 148 MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFAAASESLRRGIMFANSLYL 205

[Close]

BLAST of HG10006153 vs. TAIR 10
Match: AT2G06990.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-22
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1   MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
           MTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AAS+SLRRGIMFANSLYL
Sbjct: 938 MTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESKFAAASESLRRGIMFANSLYL 995

[Close]

BLAST of HG10006153 vs. TAIR 10
Match: AT1G59760.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-09
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 4   IFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
           +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R I+FA SLYL
Sbjct: 934 VFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSKIKRDIVFAASLYL 988

[Close]

BLAST of HG10006153 vs. TAIR 10
Match: AT3G46960.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 49.7 bits (117), Expect = 9.3e-07
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1    MTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGIMFANSLYL 59
            +TD+ EG I+R+  RLDE   + + AA  +G   L  K  AAS++++R I+FA SLY+
Sbjct: 1287 LTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALHKKMDAASNAIKRDIVFAASLYV 1344

The following BLAST results are available for this feature:

BLAST of HG10006153 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889177.1	4.8e-21	100.00	DExH-box ATP-dependent RNA helicase DExH10 isoform X1 [Benincasa hispida]	[more]
XP_023546254.1	6.2e-21	98.28	DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita pepo subsp. pepo]	[more]
XP_022929766.1	6.2e-21	98.28	DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita moschata]	[more]
XP_022996497.1	6.2e-21	98.28	DExH-box ATP-dependent RNA helicase DExH10 [Cucurbita maxima]	[more]
XP_008450745.1	1.8e-20	98.28	PREDICTED: DExH-box ATP-dependent RNA helicase DExH10 [Cucumis melo]	[more]

BLAST of HG10006153 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVW2	2.9e-21	91.38	DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana OX=3702 GN=HE...	[more]
P42285	5.2e-10	55.17	Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3	[more]
Q9CZU3	5.2e-10	55.17	Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1	[more]
Q23223	1.7e-08	54.39	mRNA transport homolog 4 OS=Caenorhabditis elegans OX=6239 GN=mtr-4 PE=3 SV=1	[more]
Q9XIF2	4.8e-08	50.91	DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR...	[more]

BLAST of HG10006153 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K235	3.0e-21	98.28	DExH-box ATP-dependent RNA helicase DExH10 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1EP26	3.0e-21	98.28	DExH-box ATP-dependent RNA helicase DExH10 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S3BQY6	8.8e-21	98.28	DExH-box ATP-dependent RNA helicase DExH10 OS=Cucumis melo OX=3656 GN=LOC1034922...	[more]
A0A0A0LHE5	2.6e-20	96.55	DSHCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G068690 PE=4 ...	[more]
A0A7J7BVL7	5.7e-20	94.83	DSHCT domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW2...	[more]

BLAST of HG10006153 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06990.1	2.1e-22	91.38	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT1G59760.1	3.4e-09	50.91	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT3G46960.1	9.3e-07	43.10	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal	SMART	SM01142	DSHCT_2	coord: 1..58 e-value: 1.1E-5 score: -1.3
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal	PFAM	PF08148	DSHCT	coord: 1..52 e-value: 2.8E-14 score: 53.1
None	No IPR available	GENE3D	1.10.3380.30		coord: 1..58 e-value: 1.4E-20 score: 75.6
None	No IPR available	PANTHER	PTHR47961	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	coord: 1..58
None	No IPR available	PANTHER	PTHR47961:SF2	DEAD/DEAH BOX HELICASE FAMILY PROTEIN, EXPRESSED	coord: 1..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006153.1	HG10006153.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity