HG10006098 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10006098
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr07: 13508255 .. 13508524 (-)
RNA-Seq ExpressionHG10006098
SyntenyHG10006098
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCCAAAGCAGTTACAGGTCTTTGGGGTAAAAGAGCAAAAGCCAAAAGGCCTATTAGGAATGTTACAGTTTATAGCATAGCAACAAGGCGATGGAAGGCACATTCCTCTGGCGCCACCGCAGCAGGTACAGAGAGCACATATCTGGAAGCTTTTCAGCTGTCTCCGGCCGCCGTTCATCATCACCGTCGTCGTTTCCATCAATGGTACCATCATCGGTTCTTGATCGGACCCATTAACCTAAGAAACAACAAGCAGCACAGATAA

mRNA sequence

ATGGCAGCCAAAGCAGTTACAGGTCTTTGGGGTAAAAGAGCAAAAGCCAAAAGGCCTATTAGGAATGTTACAGTTTATAGCATAGCAACAAGGCGATGGAAGGCACATTCCTCTGGCGCCACCGCAGCAGGTACAGAGAGCACATATCTGGAAGCTTTTCAGCTGTCTCCGGCCGCCGTTCATCATCACCGTCGTCGTTTCCATCAATGGTACCATCATCGGTTCTTGATCGGACCCATTAACCTAAGAAACAACAAGCAGCACAGATAA

Coding sequence (CDS)

ATGGCAGCCAAAGCAGTTACAGGTCTTTGGGGTAAAAGAGCAAAAGCCAAAAGGCCTATTAGGAATGTTACAGTTTATAGCATAGCAACAAGGCGATGGAAGGCACATTCCTCTGGCGCCACCGCAGCAGGTACAGAGAGCACATATCTGGAAGCTTTTCAGCTGTCTCCGGCCGCCGTTCATCATCACCGTCGTCGTTTCCATCAATGGTACCATCATCGGTTCTTGATCGGACCCATTAACCTAAGAAACAACAAGCAGCACAGATAA

Protein sequence

MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAVHHHRRRFHQWYHHRFLIGPINLRNNKQHR
Homology
BLAST of HG10006098 vs. NCBI nr
Match: PON39307.1 (hypothetical protein TorRG33x02_342980 [Trema orientale])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 1  MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAV 60
          MA+KA+TGL  +R KAKRP+ NV V  IAT RW+A    ++AA T+STYL+A Q  P  +
Sbjct: 1  MASKAITGLGSERTKAKRPVGNVAVDGIATWRWQAEPFSSSAASTQSTYLKAPQPPPTLI 60

Query: 61 HHHRRRFH-----QWYHHRFLIGPINLRNNK 87
          HHH    H     QW+    L   +  R+++
Sbjct: 61 HHHHHHLHLPWLYQWHQRWHLSALLRRRHHR 91

BLAST of HG10006098 vs. NCBI nr
Match: PON45520.1 (hypothetical protein PanWU01x14_258830 [Parasponia andersonii])

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1  MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAV 60
          MA+KA+TGL  +R KAKRP+ NV V  IAT RW+A   G++AA T+STYL+A Q  P  +
Sbjct: 1  MASKAITGLGSERTKAKRPVGNVAVDGIATWRWQAEPFGSSAASTQSTYLKAPQPPPTLI 60

Query: 61 HHHRRR--FHQWYHHRFLIGPINLRNNK 87
          HHH      +QW H R+ +  +  R ++
Sbjct: 61 HHHLHLPWLYQW-HQRWHLSALLRRRHR 87

BLAST of HG10006098 vs. NCBI nr
Match: KEH42944.1 (hypothetical protein MTR_1g078280 [Medicago truncatula])

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-05
Identity = 33/63 (52.38%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 1  MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAV 60
          MA KA+TGL  +  KAKR I  VT   IATRR +A   G T A    TYLE+ Q  PA +
Sbjct: 1  MATKAITGLRDEGTKAKRLIWKVTCEDIATRRGQAQPFGTTTASAHCTYLESTQFPPAFI 60

Query: 61 HHH 64
          HHH
Sbjct: 61 HHH 63

BLAST of HG10006098 vs. ExPASy TrEMBL
Match: A0A2P5ARZ6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_342980 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-10
Identity = 40/91 (43.96%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 1  MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAV 60
          MA+KA+TGL  +R KAKRP+ NV V  IAT RW+A    ++AA T+STYL+A Q  P  +
Sbjct: 1  MASKAITGLGSERTKAKRPVGNVAVDGIATWRWQAEPFSSSAASTQSTYLKAPQPPPTLI 60

Query: 61 HHHRRRFH-----QWYHHRFLIGPINLRNNK 87
          HHH    H     QW+    L   +  R+++
Sbjct: 61 HHHHHHLHLPWLYQWHQRWHLSALLRRRHHR 91

BLAST of HG10006098 vs. ExPASy TrEMBL
Match: A0A2P5B9Q3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_258830 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-09
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 1  MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAV 60
          MA+KA+TGL  +R KAKRP+ NV V  IAT RW+A   G++AA T+STYL+A Q  P  +
Sbjct: 1  MASKAITGLGSERTKAKRPVGNVAVDGIATWRWQAEPFGSSAASTQSTYLKAPQPPPTLI 60

Query: 61 HHHRRR--FHQWYHHRFLIGPINLRNNK 87
          HHH      +QW H R+ +  +  R ++
Sbjct: 61 HHHLHLPWLYQW-HQRWHLSALLRRRHR 87

BLAST of HG10006098 vs. ExPASy TrEMBL
Match: A0A6M2EFQ1 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 0

Query: 1  MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAV 60
          MA++A+TGL  +  + K P+ NV +  IATRRW+A+    + A    TYL+  Q SP  +
Sbjct: 1  MASEAITGLGSEGTETKGPVWNVAIDGIATRRWQANPLSTSTASAHCTYLKTIQSSPGLI 60

Query: 61 HHHR-RRFHQWYHHRFLI----GPINLRNNK 87
          HHH   R  QW H R  +     PI L+ NK
Sbjct: 61 HHHSYLRNLQWLHQRHHLITCCRPIYLQINK 91

BLAST of HG10006098 vs. ExPASy TrEMBL
Match: A0A072VLT0 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_1g078280 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.2e-05
Identity = 33/63 (52.38%), Postives = 38/63 (60.32%), Query Frame = 0

Query: 1  MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAV 60
          MA KA+TGL  +  KAKR I  VT   IATRR +A   G T A    TYLE+ Q  PA +
Sbjct: 1  MATKAITGLRDEGTKAKRLIWKVTCEDIATRRGQAQPFGTTTASAHCTYLESTQFPPAFI 60

Query: 61 HHH 64
          HHH
Sbjct: 61 HHH 63

BLAST of HG10006098 vs. ExPASy TrEMBL
Match: A0A218WIC5 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018208 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-04
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 1  MAAKAVTGLWGKRAKAKRPIRNVTVYSIATRRWKAHSSGATAAGTESTYLEAFQLSPAAV 60
          MA++A+TGL G+RA+ K PI +V V  IA  R +AH   ++AA  +  YLEA +L P  V
Sbjct: 1  MASEAITGLRGERAEPKWPIGDVAVDGIAAGRRQAHPVCSSAACAQRAYLEAPELPPRLV 60

Query: 61 HHHRRRFHQWYHHRFLIGP---INLRNNKQH 89
           HH      ++ HR  + P   +  +N  QH
Sbjct: 61 QHHHLHL-PFFDHRHHLRPSITLQAKNKTQH 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON39307.11.7e-0943.96hypothetical protein TorRG33x02_342980 [Trema orientale][more]
PON45520.12.9e-0946.59hypothetical protein PanWU01x14_258830 [Parasponia andersonii][more]
KEH42944.12.5e-0552.38hypothetical protein MTR_1g078280 [Medicago truncatula][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5ARZ68.2e-1043.96Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_342980 PE=4 SV... [more]
A0A2P5B9Q31.4e-0946.59Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_258830 PE... [more]
A0A6M2EFQ11.9e-0640.66Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1[more]
A0A072VLT01.2e-0552.38Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_1g078280 PE=4 SV=1[more]
A0A218WIC55.2e-0439.56Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr018208 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10006098.1HG10006098.1mRNA