HG10006052 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006052
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ankyrin repeat-containing protein
Location	Chr07: 12418935 .. 12419156 (+)
RNA-Seq Expression	HG10006052
Synteny	HG10006052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAGTCAAAGAGTTTCCCTTCATTTTCGATTTCACTAAACCAAAATCAAAATGGCTCAACCATAACTACATCTGCAGATGAGCAAGTAGAGGTTGTTGTTGAAGGCAACGTCCCCATTCCTCCGCCGTTTATGGCGGCTGACGACTCCCAATTTCCACCCACTGCTGCTCGATTGTTAAGGACGGAAGCAAAGAACCAGACAATGGATGTGGCATAA

mRNA sequence

ATGAGAAAGTCAAAGAGTTTCCCTTCATTTTCGATTTCACTAAACCAAAATCAAAATGGCTCAACCATAACTACATCTGCAGATGAGCAAGTAGAGGTTGTTGTTGAAGGCAACGTCCCCATTCCTCCGCCGTTTATGGCGGCTGACGACTCCCAATTTCCACCCACTGCTGCTCGATTGTTAAGGACGGAAGCAAAGAACCAGACAATGGATGTGGCATAA

Coding sequence (CDS)

ATGAGAAAGTCAAAGAGTTTCCCTTCATTTTCGATTTCACTAAACCAAAATCAAAATGGCTCAACCATAACTACATCTGCAGATGAGCAAGTAGAGGTTGTTGTTGAAGGCAACGTCCCCATTCCTCCGCCGTTTATGGCGGCTGACGACTCCCAATTTCCACCCACTGCTGCTCGATTGTTAAGGACGGAAGCAAAGAACCAGACAATGGATGTGGCATAA

Protein sequence

MRKSKSFPSFSISLNQNQNGSTITTSADEQVEVVVEGNVPIPPPFMAADDSQFPPTAARLLRTEAKNQTMDVA

Homology

[Close]

BLAST of HG10006052 vs. NCBI nr
Match: XP_008440652.1 (PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo] >TYJ99317.1 ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MRKSKSFPSFSISLNQNQNGSTITTSADEQVEVVVEGNVPIPPPFMAADDSQFPPTAARL 60
          MRKSKSFPS  I    +   +T T+S  EQVE+VVEG   IPPP  AADDSQFPPTAA  
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAADQ 60

Query: 61 L----RTEAKNQTMDVA 74
          L     TE  +QT++ A
Sbjct: 61 LTLCNTTEPDSQTINGA 77

[Close]

BLAST of HG10006052 vs. NCBI nr
Match: KAA0055387.1 (ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.2e-08
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MRKSKSFPSFSISLNQNQNGSTITTSADEQVEVVVEGNVPIPPPFMAADDSQFPPTAARL 60
          MRKSKSFPS  I    +   +T T+S  EQVE+VVEG   IPPP  AADDSQFPPTAA  
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAADQ 60

Query: 61 L----RTEAKNQTMDVA 74
          L     TE  +QT++ A
Sbjct: 61 LTLCNTTEPDSQTINGA 77

[Close]

BLAST of HG10006052 vs. NCBI nr
Match: XP_004153067.1 (ankyrin repeat-containing protein ITN1 isoform X1 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-06
Identity = 42/79 (53.16%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 1  MRKSKSFPSFSISLNQNQNGSTITTSAD--EQVEVVVEGNVPIPPPFMAADDSQFPPTAA 60
          MRKSKS PS  I        +T TT++   EQVE+VVEG   IPPP  AADDSQ PPTAA
Sbjct: 1  MRKSKSSPSIPIQSGSLSLTTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQLPPTAA 60

Query: 61 RLLR----TEAKNQTMDVA 74
            L     TE  +QT+D A
Sbjct: 61 DQLTLCNPTEPDSQTIDGA 79

[Close]

BLAST of HG10006052 vs. NCBI nr
Match: KGN64482.2 (hypothetical protein Csa_013492 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-06
Identity = 42/79 (53.16%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 1   MRKSKSFPSFSISLNQNQNGSTITTSAD--EQVEVVVEGNVPIPPPFMAADDSQFPPTAA 60
           MRKSKS PS  I        +T TT++   EQVE+VVEG   IPPP  AADDSQ PPTAA
Sbjct: 660 MRKSKSSPSIPIQSGSLSLTTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQLPPTAA 719

Query: 61  RLLR----TEAKNQTMDVA 74
             L     TE  +QT+D A
Sbjct: 720 DQLTLCNPTEPDSQTIDGA 738

[Close]

BLAST of HG10006052 vs. ExPASy TrEMBL
Match: A0A5D3BJL1 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005310 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MRKSKSFPSFSISLNQNQNGSTITTSADEQVEVVVEGNVPIPPPFMAADDSQFPPTAARL 60
          MRKSKSFPS  I    +   +T T+S  EQVE+VVEG   IPPP  AADDSQFPPTAA  
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAADQ 60

Query: 61 L----RTEAKNQTMDVA 74
          L     TE  +QT++ A
Sbjct: 61 LTLCNTTEPDSQTINGA 77

[Close]

BLAST of HG10006052 vs. ExPASy TrEMBL
Match: A0A5A7ULD5 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002320 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MRKSKSFPSFSISLNQNQNGSTITTSADEQVEVVVEGNVPIPPPFMAADDSQFPPTAARL 60
          MRKSKSFPS  I    +   +T T+S  EQVE+VVEG   IPPP  AADDSQFPPTAA  
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAADQ 60

Query: 61 L----RTEAKNQTMDVA 74
          L     TE  +QT++ A
Sbjct: 61 LTLCNTTEPDSQTINGA 77

[Close]

BLAST of HG10006052 vs. ExPASy TrEMBL
Match: A0A1S3B281 (ankyrin repeat-containing protein At3g12360-like OS=Cucumis melo OX=3656 GN=LOC103485002 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 1  MRKSKSFPSFSISLNQNQNGSTITTSADEQVEVVVEGNVPIPPPFMAADDSQFPPTAARL 60
          MRKSKSFPS  I    +   +T T+S  EQVE+VVEG   IPPP  AADDSQFPPTAA  
Sbjct: 1  MRKSKSFPSIPIQSGLSLTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQFPPTAADQ 60

Query: 61 L----RTEAKNQTMDVA 74
          L     TE  +QT++ A
Sbjct: 61 LTLCNTTEPDSQTINGA 77

[Close]

BLAST of HG10006052 vs. ExPASy TrEMBL
Match: A0A0A0LWX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058110 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-06
Identity = 42/79 (53.16%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 1  MRKSKSFPSFSISLNQNQNGSTITTSAD--EQVEVVVEGNVPIPPPFMAADDSQFPPTAA 60
          MRKSKS PS  I        +T TT++   EQVE+VVEG   IPPP  AADDSQ PPTAA
Sbjct: 1  MRKSKSSPSIPIQSGSLSLTTTTTTTSSHHEQVEIVVEGQPIIPPPSTAADDSQLPPTAA 60

Query: 61 RLLR----TEAKNQTMDVA 74
            L     TE  +QT+D A
Sbjct: 61 DQLTLCNPTEPDSQTIDGA 79

The following BLAST results are available for this feature:

BLAST of HG10006052 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440652.1	1.2e-08	55.84	PREDICTED: ankyrin repeat-containing protein At3g12360-like [Cucumis melo] >TYJ9...	[more]
KAA0055387.1	1.2e-08	55.84	ankyrin repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_004153067.1	2.5e-06	53.16	ankyrin repeat-containing protein ITN1 isoform X1 [Cucumis sativus]	[more]
KGN64482.2	2.5e-06	53.16	hypothetical protein Csa_013492 [Cucumis sativus]	[more]

BLAST of HG10006052 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJL1	5.7e-09	55.84	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7ULD5	5.7e-09	55.84	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S3B281	5.7e-09	55.84	ankyrin repeat-containing protein At3g12360-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0LWX0	1.2e-06	53.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G058110 PE=4 SV=1	[more]

BLAST of HG10006052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006052.1	HG10006052.1	mRNA