HG10006031 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006031
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	UPF0047 protein YjbQ
Location	Chr07: 11902708 .. 11905861 (+)
RNA-Seq Expression	HG10006031
Synteny	HG10006031

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGGCGCTACTCTCTTGGCTTCACAACCACTCCGCGTAAAGTCGTCGTGGAGCAGCAATTCCAGTACTGGTAATCCCTCCGCCACCGCAGGTTCTGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGGTGATTAATTGTTTATCTTTTCCCACCTTATCCAGAATCTCGTATCGATCTCCTGAGGTTTAAATGGTGCCAACTTTTTGTTTTTATTTTATTTCTGTTCATAAGTTTTGGTTGCTTCTTAGTCTAGCTTAGGCCTGTCATCTACACATGTCAGTTTGACTTTTCCGAACAATAGACGAGAATCTTCATGTTATGTAGATACATCCGAAACAATTCTTTTTGTTGCCTTGCTAAAATTATTCATTTCAACAATAATATGATATGCGATTTGTTTTCCTCACATTATTGCTGCTACCGAGTTTGATTTCTATATCAGATAGTGAAGGAAATTGGGCAAGACTTGTCAGAATTCAAATGTGGCCTTGCTCATATCTTCTGTAAATCTTCTAATCCCGCTTTTCTATTCTGGAGATTAATGAGTAGTTGGATTTCTCTGTTGAATCATTTGATGATGTCTCAGTGCAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATGCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAAGATAGTGCCTGAAGTTAGTTTGCTATCCGCACTTATCATTTGCAACTGTCATTCGTCGCGAGCTATCCCATTTTGACCTTTGTTTCTCTCTCCCACTCTCTCATTTGGGGGGTTGTTTGCAGGGTACATCTGCTCCTTGGAAGCATACACTTGAAGGTTATAAACACTTATTTCCTTCTACTTTATTCTACTAAGACCTTTTCCCTTTTCTAGTTTTATGATTTCATATACTGAAAAACAAAATGTACTCTACTAAAAGGGCCCGTGCTTTTGTCTCCATCATAATATTGTAAGGCAATTTGAACTCTTGTTAGTTGTGATGTATAGGATGCTAATGAAGGTGCTTCTTGGCTATGAGGGAGGAGGGATTATGATAGATGTGCGGTAGTTTATGAAAAAAGACAAAAAAAAAAAAAAAAAAAAAAGTAAAATCAACCAACCAATGCAAATGATATATGAAGAGGAAGTAGGCTAGAACAAAATTTATCCGAAGTGTTAAATCGTCGATTGATCCAAAAGCTTAAACTAGTGGGTGAAGGCGAATTTAATATCGCCTCACTTGTGGACTTGAAATATGAAGAAGATCCAACAAGTAAAAATCAATATTAATTGGAGAGGAAACAACAATGCAGGAGTTTGAACATAGACCTCTTGAACCAACCTGCTCTGATACCATCTTAAATTGTCGATTGACCCAAAAGCTTAAGCTGATGGGTGAAGGCAAATGTAATTTTATATCATCTAACACAAAGTAATCTCATTTTAATTTGACAGGTTATCTTTACAAAAGCCAAACTCACTCCCAATCCTTCAAAGTTCTGGACTTCTATCCCATCTAAAGATGATTGAAAGGGTAACTAACGAACTTATACGTATGCTGGTTTGGATAAGAAATGTAAGCATAAGATTTTTCCTAACAAAAAGTAAAAAGAAAAAAGAAAAAAGAAAAAGAGAAGGTTTTTTGACCTTTAAATAAACAAAAACTAGGGTAAATCCATTTCAACAAATTTATTACTAAGGCTCCGTTTGATAACCATTTTGTTTTTGGTTTTTGGTTTTTGAAAATTGTGCTTGTTTTCTTCCAACTTCTTTGCTATGGTTTTCATCTTTCCTAACTAAACATTTGAATTCTTAGCAAAATTTGAAAAACAAAATTAAGTTTTTGACTTTTTTAGTTTTCAAAACTTGGTTTGGTTTTTTGAAAACACTCCTAAAAAGTAGATAACAAAATAAAGAAACCAAATGGTACAAGTAGTGTTTATAAGCGTAGTTTTAAAAACCAAAAACAAAAAAATTAAATGGTTGTGAAACGGGGCCTATATAACTTGTGATGTAGTTGGTTAGGGTAAATTAGGGTATCTTGGTCAAATTCTTATTGATTAGGATTAGGATTAGTTTCATTGATTGGTTAGGATTAGGATTAGTTTCCTTGGCTTTTTAGGATTAGGATTAGTTTGCTTTCCAATTCTCTATGAATAGAGGGATTGTGTTATTGTTTTGATAACTTTTTGTTCATAATAAAGACTTTGATTTTGTTATTGGAGATTTCTCTCCTTTTATCTTTTAGGCTACATCAACTTGCTTGCTTTTATTTTGGAAAGAAAACAATAGAGGTGATCATTGGGCAGGCAAAGTCGGTTTTGTATAGAAACCGCCACCGCTCGTCGTTGAGTCGGTGTTCATCTGTCGGTTACTGGCGGTTGTGGAGTTGGTACAGATGCCAGCCATCCAAGCACAGGGCCAGATTGGTCGGAAATATTGGTTTTAATAACACCCTCAAACGTTATAAAAAAGGGAGAGGAGATTAGAAAGAAGAAGGGAGGAAGAAGAGAGAAAATTGAATCAAAATGGAATAGAAAATAATAGAGAAAGAAGAAGAAGAAGGATGGAAAAGGGAGAAGAAGTTTGGAAAAAGGTAGAGATGGGAAAAGGGGGAGAACGAAATTGAGAAAGAATATAGAAATAAAATGGGTTGTAAAAAGGAAAGTTAAATAAAAGAGAAGAAATGACAACTCATGATTGAAAGAGAATGAGAAAAGACACATGAATGATGGAGAGAGAAGAACATGATGGAAAGAGAAATGGGTGAATGTTGGAAAATAGAGGGAGAAAATAATTTTTTTAATTAGTAATTAAGGATTCATGCGAATCAAGACATAATGATGGAAAAGAGAGAGAATGAATTGTTTAATATTTATTTTAATATTATTTCATGCCAATCTATGCCTTGATTAGGTAAATGACAGGTTTTTCTTTATTGGACATGTTATTTAAGGCAAGTTGGTGAAGAAATTTAACATATAATTGGTTGGTTCGGTAAAAAATGGGCTACTCATACCATCTGACTGACCATCTTTGGTTTTCAGATTGAAAGACTGTTGCCGACCAGAAAACCTCCAACACCGGCTGGATGA

mRNA sequence

ATGCAAGGCGCTACTCTCTTGGCTTCACAACCACTCCGCGTAAAGTCGTCGTGGAGCAGCAATTCCAGTACTGGTAATCCCTCCGCCACCGCAGGTTCTGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATGCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAAGATAGTGCCTGAAATTGAAAGACTGTTGCCGACCAGAAAACCTCCAACACCGGCTGGATGA

Coding sequence (CDS)

ATGCAAGGCGCTACTCTCTTGGCTTCACAACCACTCCGCGTAAAGTCGTCGTGGAGCAGCAATTCCAGTACTGGTAATCCCTCCGCCACCGCAGGTTCTGGCAATCCAAGCTTGATGGCGGCCGCTGGTCCGAAGTGGGCTCAGAAGACTGTTACGCTGCCTCCTCATAGGCGGGGCTGTCATCTCATCACCCCGAAGCATACGAGTGCCTCTCTTACCATCAATGAAAACTATGATGCGGATGTTCGGAGTGATACTGAAACCTTCCTCAACAAGATAGTGCCTGAAATTGAAAGACTGTTGCCGACCAGAAAACCTCCAACACCGGCTGGATGA

Protein sequence

MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPKHTSASLTINENYDADVRSDTETFLNKIVPEIERLLPTRKPPTPAG

Homology

[Close]

BLAST of HG10006031 vs. NCBI nr
Match: KAG7024064.1 (yjbQ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.2 bits (422), Expect = 8.2e-38
Identity = 89/122 (72.95%), Postives = 94/122 (77.05%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPEIE 101
           HLITPK                      HTSASLTINENYD+DVRSDTETFLN IVPE+ 
Sbjct: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPEVS 120

[Close]

BLAST of HG10006031 vs. NCBI nr
Match: XP_022936473.1 (uncharacterized protein LOC111443082 [Cucurbita moschata] >XP_023521112.1 uncharacterized protein LOC111784738 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 165.2 bits (417), Expect = 3.1e-37
Identity = 88/118 (74.58%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of HG10006031 vs. NCBI nr
Match: KAG6591177.1 (hypothetical protein SDJN03_13523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 87/118 (73.73%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK  W +NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLWRNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of HG10006031 vs. NCBI nr
Match: XP_022976235.1 (uncharacterized protein LOC111476694 [Cucurbita maxima])

HSP 1 Score: 160.2 bits (404), Expect = 1.0e-35
Identity = 87/118 (73.73%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK   S+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLGSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGNDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of HG10006031 vs. NCBI nr
Match: XP_038897717.1 (UPF0047 protein C4A8.02c [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 85/118 (72.03%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA L A+QPLR+K  W+SNSSTGN SATA SGN SLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 15  MQGAILSAAQPLRIKLLWNSNSSTGNSSATARSGNTSLMAAAGPKWAQKTVTLPPHRRGC 74

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DVRSDTETFLNKIVPE
Sbjct: 75  HLITPKIMKEIGPDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNKIVPE 132

[Close]

BLAST of HG10006031 vs. ExPASy Swiss-Prot
Match: P0AF49 (UPF0047 protein YjbQ OS=Escherichia coli O157:H7 OX=83334 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-05
Identity = 29/72 (40.28%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 46 WAQKTVTLPPHRRGCHLITP---------------------KHTSASLTINENYDADVRS 97
          W QKT+TL    RG HL+T                      +HTSASLT+NEN D  VR 
Sbjct: 2  WYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQHTSASLTLNENCDPTVRH 61

[Close]

BLAST of HG10006031 vs. ExPASy Swiss-Prot
Match: P0AF48 (UPF0047 protein YjbQ OS=Escherichia coli (strain K12) OX=83333 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-05
Identity = 29/72 (40.28%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 46 WAQKTVTLPPHRRGCHLITP---------------------KHTSASLTINENYDADVRS 97
          W QKT+TL    RG HL+T                      +HTSASLT+NEN D  VR 
Sbjct: 2  WYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQHTSASLTLNENCDPTVRH 61

[Close]

BLAST of HG10006031 vs. ExPASy Swiss-Prot
Match: P0A2L2 (UPF0047 protein YjbQ OS=Salmonella typhi OX=90370 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.6e-05
Identity = 29/72 (40.28%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 46 WAQKTVTLPPHRRGCHLITPK---------------------HTSASLTINENYDADVRS 97
          W Q+T+TL    RG HLIT +                     HTSASLT+NEN D  VR+
Sbjct: 2  WYQRTITLSEKPRGFHLITDEITDKLSGLPPVETGLLHLLLLHTSASLTLNENCDPTVRA 61

[Close]

BLAST of HG10006031 vs. ExPASy Swiss-Prot
Match: P0A2L1 (UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 9.6e-05
Identity = 29/72 (40.28%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 46 WAQKTVTLPPHRRGCHLITPK---------------------HTSASLTINENYDADVRS 97
          W Q+T+TL    RG HLIT +                     HTSASLT+NEN D  VR+
Sbjct: 2  WYQRTITLSEKPRGFHLITDEITDKLSGLPPVETGLLHLLLLHTSASLTLNENCDPTVRA 61

[Close]

BLAST of HG10006031 vs. ExPASy Swiss-Prot
Match: O14155 (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC4A8.02c PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-04
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 0


Query: 66 KHTSASLTINENYDADVRSDTETFLNKIVPE 97
          +HTSA+LTINEN+DAD R+D    L+KIVPE
Sbjct: 44 QHTSAALTINENWDADTRADMNDILDKIVPE 74

[Close]

BLAST of HG10006031 vs. ExPASy TrEMBL
Match: A0A6J1FDC5 (uncharacterized protein LOC111443082 OS=Cucurbita moschata OX=3662 GN=LOC111443082 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 88/118 (74.58%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK  WS+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLWSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGKDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of HG10006031 vs. ExPASy TrEMBL
Match: A0A6J1IIX0 (uncharacterized protein LOC111476694 OS=Cucurbita maxima OX=3661 GN=LOC111476694 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.9e-36
Identity = 87/118 (73.73%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA LLA+QPLRVK   S+NSSTGNPSATAG+GNPSLMAAAGPKWAQKTVTLPPHRRGC
Sbjct: 1   MQGAVLLAAQPLRVKLLGSNNSSTGNPSATAGAGNPSLMAAAGPKWAQKTVTLPPHRRGC 60

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DVRSDTETFLN IVPE
Sbjct: 61  HLITPKIMKEIGNDLSEFKCGLAHIFLQHTSASLTINENYDSDVRSDTETFLNNIVPE 118

[Close]

BLAST of HG10006031 vs. ExPASy TrEMBL
Match: A0A5D3D8K7 (UPF0047 protein YjbQ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00070 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 85/118 (72.03%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPSLMAAAGPKWAQKTVTL PHRRGC
Sbjct: 19  MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSLMAAAGPKWAQKTVTLSPHRRGC 78

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DV+SDTETFLNKIVPE
Sbjct: 79  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNKIVPE 136

[Close]

BLAST of HG10006031 vs. ExPASy TrEMBL
Match: A0A1S3BUP9 (UPF0047 protein YjbQ OS=Cucumis melo OX=3656 GN=LOC103493869 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.0e-34
Identity = 85/118 (72.03%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPSLMAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSLMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DV+SDTETFLNKIVPE
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQSDTETFLNKIVPE 118

[Close]

BLAST of HG10006031 vs. ExPASy TrEMBL
Match: A0A0A0L4Q6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665660 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 83/118 (70.34%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MQGATLLASQPLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGC 60
           MQGA +LA+QPLRVK   S+NSSTGNPSATAGS NPS MAAAGPKWAQKTVTL PHRRGC
Sbjct: 1   MQGAIILAAQPLRVKLLRSNNSSTGNPSATAGSSNPSFMAAAGPKWAQKTVTLSPHRRGC 60

Query: 61  HLITPK----------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
           HLITPK                      HTSASLTINENYD+DV++DTETFLNKIVPE
Sbjct: 61  HLITPKIMKEIGQDLSEFKCGLAHIFLQHTSASLTINENYDSDVQNDTETFLNKIVPE 118

[Close]

BLAST of HG10006031 vs. TAIR 10
Match: AT1G21065.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0047 (InterPro:IPR001602); Has 3800 Blast hits to 3784 proteins in 1137 species: Archae - 215; Bacteria - 2154; Metazoa - 42; Fungi - 99; Plants - 99; Viruses - 0; Other Eukaryotes - 1191 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 54/108 (50.00%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 11  PLRVKSSWSSNSSTGNPSATAGSGNPSLMAAAGPKWAQKTVTLPPHRRGCHLITPK---- 70
           PLRV+S  +         A   +   S+ +++G KWAQKT+TLPP RRGCHLITPK    
Sbjct: 51  PLRVRSVLT--------PANPATDRASMASSSGAKWAQKTITLPPLRRGCHLITPKILKE 110

Query: 71  ------------------HTSASLTINENYDADVRSDTETFLNKIVPE 97
                             HTSASLTINENYD DV++DTETFLN+IVPE
Sbjct: 111 IREDLSDFNCGLAHVFLQHTSASLTINENYDPDVQADTETFLNRIVPE 150

The following BLAST results are available for this feature:

BLAST of HG10006031 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024064.1	8.2e-38	72.95	yjbQ [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022936473.1	3.1e-37	74.58	uncharacterized protein LOC111443082 [Cucurbita moschata] >XP_023521112.1 unchar...	[more]
KAG6591177.1	1.2e-36	73.73	hypothetical protein SDJN03_13523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022976235.1	1.0e-35	73.73	uncharacterized protein LOC111476694 [Cucurbita maxima]	[more]
XP_038897717.1	1.9e-34	72.03	UPF0047 protein C4A8.02c [Benincasa hispida]	[more]

BLAST of HG10006031 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0AF49	4.3e-05	40.28	UPF0047 protein YjbQ OS=Escherichia coli O157:H7 OX=83334 GN=yjbQ PE=3 SV=1	[more]
P0AF48	4.3e-05	40.28	UPF0047 protein YjbQ OS=Escherichia coli (strain K12) OX=83333 GN=yjbQ PE=3 SV=1	[more]
P0A2L2	9.6e-05	40.28	UPF0047 protein YjbQ OS=Salmonella typhi OX=90370 GN=yjbQ PE=3 SV=1	[more]
P0A2L1	9.6e-05	40.28	UPF0047 protein YjbQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700...	[more]
O14155	1.6e-04	67.74	UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) ...	[more]

BLAST of HG10006031 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FDC5	1.5e-37	74.58	uncharacterized protein LOC111443082 OS=Cucurbita moschata OX=3662 GN=LOC1114430...	[more]
A0A6J1IIX0	4.9e-36	73.73	uncharacterized protein LOC111476694 OS=Cucurbita maxima OX=3661 GN=LOC111476694...	[more]
A0A5D3D8K7	2.0e-34	72.03	UPF0047 protein YjbQ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134...	[more]
A0A1S3BUP9	2.0e-34	72.03	UPF0047 protein YjbQ OS=Cucumis melo OX=3656 GN=LOC103493869 PE=3 SV=1	[more]
A0A0A0L4Q6	1.3e-33	70.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665660 PE=3 SV=1	[more]

BLAST of HG10006031 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21065.1	1.8e-19	50.00	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001602	Uncharacterised protein family UPF0047	PFAM	PF01894	UPF0047	coord: 56..96 e-value: 1.3E-9 score: 38.2
IPR001602	Uncharacterised protein family UPF0047	PANTHER	PTHR30615	UNCHARACTERIZED PROTEIN YJBQ-RELATED	coord: 21..66
IPR001602	Uncharacterised protein family UPF0047	PANTHER	PTHR30615	UNCHARACTERIZED PROTEIN YJBQ-RELATED	coord: 66..96
IPR035917	YjbQ-like superfamily	GENE3D	2.60.120.460		coord: 47..106 e-value: 5.0E-10 score: 41.4
IPR035917	YjbQ-like superfamily	SUPERFAMILY	111038	YjbQ-like	coord: 46..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR30615:SF14	SUBFAMILY NOT NAMED	coord: 21..66
None	No IPR available	PANTHER	PTHR30615:SF14	SUBFAMILY NOT NAMED	coord: 66..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006031.1	HG10006031.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane