HG10006025 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10006025
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 11796644 .. 11799018 (+)
RNA-Seq Expression	HG10006025
Synteny	HG10006025

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAATTACGGGCGTGTCCTCACTAAACCCCCTTCGTAAGTAGTCTATCAGTATAATTTAAAACTTACGTGCTAACAGCTTCTTCTTTCTCACTCGCTCTCTTTTCTCATTCACTTACTCCCTTACTTGATCTCGCTGCCGTTGAAACCTCATCAACTCCTTTGCAAATGAAAACATCCATCCGCCGCCGACTTCCAAATCTATCAAGTAAGTGAATTCAAACTTTGTCAAATCGAGTAAGTGGAGACGATCGATTTGATGTGGAAGACTGAGATGACCGAGATGATCGGGATGACCAGGAGGACCGGGATGATCGGGAGGACCGGGATGATGGGGATGCTCGAGCTACTGGTGATGATCGAGTTGATGGGGATGGAGTTGATATAAATAGTGGGGATAGGGATGATGTGGATGACATGGACACGACTGAGCCCACAAATTCGGGAATGCCAACGACTGAGCCCAGTGTATTCGACGCTACACCTAATGTATACTCCTACCTGCGGAGTATTGACAGTTTTGTGTCGAGGTTGGAGGGTTGTGTATTGGACGTCGATGACGAACTCGATGTCGTGAAAGTACAACTAATGACCATTACGTCATTATTACAATCATTGATTAAGGTTTGTTTTTTTTTTCATTTGTTTGCTTCAAGTACATTACTTATTTTTGTTGGTCAATTGATATTTTCATATGATGATTGAAGGATCCCACTATGATGTCGGGTTTGAGGTCACCCACACCTCTTCGAGACCTAGATTCGAGGTCACCCTCTCCACCCCGACACACGGATTCGATGAGGTCACCCACACCACCCCGAGACCCAGATTCGAGGAGGTCACCCACCCCACCACCACCTCGACCTCATTCTCCACCCCGAGACTTGGATTCGAGGAGGTCACTCCCCCACCTCCACTGCCTTCCCCACCTCCACCTCCTTCCTCACCCCCACCTCCACCTCCTTCTCCACCCCTGTTTACTGAGGCCAGTAATTCACCTCCACCACTTTTACTTCCTTCTCCACATTCACTTTATTCTCCACCCCCGGCTTTCGAGGTTACTATTTCACCCCCACCACTTCCAGTTCCCTCTCCACTGCCTTCTATTGCTATAGAGCCAGTGCTAGATCCCGTTCCTCTCCCGTGTTCTACCCCATAGACAGACATCCATTGGTAAGTGTACTTTGTGATTGCAATTTAGCTATATGTTTTTTAATCCCTGCTATAGAGCCAGTATTAATCCTTTTATGTTTTTAAATGTATGTAGGTACTTGGCGATCGTCGAAAAATTGGTCGTAAAAGGAAGGGTGTTGACAAGTACACTCCAACAGACCCACGAAAGAAGAAAACGACGAAACAGGAGACAACTGCAGCGCAAACGTTCAAGTACCCCCTACCTGGAGTTTATAAACCGATGGGTAGACCGAGGGTCAGCTACAATATAGCACACGACGTTCCATCCGGCGTATTCGACGATATGATGTCATGGATTACTAATGAGAGTACGGACAGTGGGTTTATAGTTAATTCATTTAAACCACTGTCCAAGAAATTCTTCGAGGAGTTGACTGAACTGAGTTCATGGGTTGAGTGCGATGTAAGTTTACATTCTTCATACTTGCTGTAATTTGATTAACTGAAGCACTTTATGTCTAATTTCTCATTTTGGATGCAGATGATAAATGTCATGTTCCGGTTCATTGCTGACAAGTTTCACAGCCGTCCAGACATGTGCATGAACAAGTTCACCGCCATACCAATGGAGATAATGGTAAGTATTTGTATTTTATGTTTGTGAGGTCATATGTTTACAAACTGTTTTTTATTGCTATGTTTTTTTGACTTTGTGAATTATTCATGGTGCAGGGTCATCTTAATGTATGCAATGGTTTATATCAACGGATTAAGAATCAACCACAATTGGCACATGCACTGCTATGAGAGGATGAAGACACATATCCAGACTATGTCAAGGGGAAATTTGAAGCACGTAACACCCAGTGGGCGGATGTAGACTTTGTGTATAGCGCGGTTAACAATGGTGAACACTAGGTCGTGGTTGCATTGGACATGAACAAAGGCCAGATATTCGTGTTTGATTTGCTTCCATCCATAACATCGATCAAGAAGCTGGAAACCATCCTGGAGCCGCTAAGTCACACCCTCCTGTCATTGCTTAACTATTGTGACATGAAGCGGTTTAAGCCAGATTTGGAAATGGGACAATGGTGCATTTTCCGACCAATGAAGAAGAACATGCAGCATGGGTCACTGGATTGTGGAATTTTTGCTGTTAAACTGTTAGAGCATTTAATTATCAGGTCGGATATACATGTAATTACACAGGAAAAGATGACTGATTATAGGATATAG

mRNA sequence

ATGATATTCGTGTTTGATTTGCTTCCATCCATAACATCGATCAAGAAGCTGGAAACCATCCTGGAGCCGCTAAGTCACACCCTCCTGTCATTGCTTAACTATTGTGACATGAAGCGGTTTAAGCCAGATTTGGAAATGGGACAATGGTGCATTTTCCGACCAATGAAGAAGAACATGCAGCATGGGTCACTGGATTGTGGAATTTTTGCTGTTAAACTGTTAGAGCATTTAATTATCAGGTCGGATATACATGTAATTACACAGGAAAAGATGACTGATTATAGGATATAG

Coding sequence (CDS)

ATGATATTCGTGTTTGATTTGCTTCCATCCATAACATCGATCAAGAAGCTGGAAACCATCCTGGAGCCGCTAAGTCACACCCTCCTGTCATTGCTTAACTATTGTGACATGAAGCGGTTTAAGCCAGATTTGGAAATGGGACAATGGTGCATTTTCCGACCAATGAAGAAGAACATGCAGCATGGGTCACTGGATTGTGGAATTTTTGCTGTTAAACTGTTAGAGCATTTAATTATCAGGTCGGATATACATGTAATTACACAGGAAAAGATGACTGATTATAGGATATAG

Protein sequence

MIFVFDLLPSITSIKKLETILEPLSHTLLSLLNYCDMKRFKPDLEMGQWCIFRPMKKNMQHGSLDCGIFAVKLLEHLIIRSDIHVITQEKMTDYRI

Homology

[Close]

BLAST of HG10006025 vs. NCBI nr
Match: XP_038875042.1 (uncharacterized protein LOC120067568 [Benincasa hispida])

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-24
Identity = 57/95 (60.00%), Postives = 76/95 (80.00%), Query Frame = 0


Query: 2   IFVFDLLPSITSIKKLETILEPLSHTLLSLLNYCDMKRFKPDLEMGQWCIFRPMKKNMQH 61
           +FVFD LPS+TS KKLE+ LEPL++TL SLL+YCD+KR+KPD++  +W I +P   N Q+
Sbjct: 46  LFVFDSLPSMTSKKKLESFLEPLTYTLPSLLHYCDLKRWKPDIKTSRWKISQPTSTNTQY 105

Query: 62  GSLDCGIFAVKLLEHLIIRSDIHVITQEKMTDYRI 97
           G LDCGIF VKLLEHL+  + +  ITQ+K+TDYR+
Sbjct: 106 GLLDCGIFVVKLLEHLVTGNALSEITQDKITDYRM 140

[Close]

BLAST of HG10006025 vs. NCBI nr
Match: XP_038874902.1 (uncharacterized protein LOC120067405 [Benincasa hispida])

HSP 1 Score: 107.1 bits (266), Expect = 8.8e-20
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 2   IFVFDLLPSITSIKKLETILEPLSHTLLSLLNYCDMKRFKPDLEMGQWCIFRPMKKNMQH 61
           IFVFD L S T + KL   LE L+ T+LSLL+YCD+ R K DL   +W I RPM  N+QH
Sbjct: 97  IFVFDSLSSYTPMTKLVNWLELLTVTVLSLLHYCDVDRSKSDLYTVRWKISRPMNVNIQH 156

Query: 62  GSLDCGIFAVKLLEHLIIRSDIHVITQEKMTDYRI 97
           GSLDCGIF +KLL+HL+  +D  VITQEK+ +YR+
Sbjct: 157 GSLDCGIFVIKLLKHLVTSTDPSVITQEKINEYRM 191

[Close]

BLAST of HG10006025 vs. NCBI nr
Match: XP_022155371.1 (uncharacterized protein LOC111022515 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-08
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 2   IFVFDLLPSITSIKKLETILEPLSHTLLSLLNYCD-MKRFKPDLEMGQWCIFRPMKKNMQ 61
           IFV+D LP   S  KL T + PLSHT+ SLL  C  M      L+   W ++ P     Q
Sbjct: 43  IFVYDPLPGHISTSKLMTDIRPLSHTIPSLLYACGLMDTTDCKLKKTSWRVYHPTTDTRQ 102

Query: 62  HGSLDCGIFAVKLLEHLIIRSDIHVITQEKMTDYR 96
            GS+DCGIFA K LE+L+  + +  + Q +++  R
Sbjct: 103 KGSIDCGIFACKFLEYLVSGNSLETLVQAEVSHIR 137

[Close]

BLAST of HG10006025 vs. NCBI nr
Match: XP_038902498.1 (uncharacterized protein LOC120089158 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-07
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 2   IFVFDLLPSITSIKKLETILEPLSHTLLSLLNYCDMKRFKPDLEMGQWCI 52
           +FVFD LPS+TS KKLE+ LE L++TL SLL+YCD+K  KPD+E  QW I
Sbjct: 266 LFVFDSLPSMTSKKKLESFLESLTYTLPSLLHYCDLKCSKPDIETSQWKI 315

[Close]

BLAST of HG10006025 vs. NCBI nr
Match: XP_038899753.1 (uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 uncharacterized protein LOC120086987 [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-04
Identity = 30/54 (55.56%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 2   IFVFDLLPSITSIKKLETILEPLSHTLLSLLNYCDMKRFKPDLEMGQWCIFRPM 56
           IFVFD LPS T + KL   LEPL+ T+ SLL+YCD+ R K DL   +W   RPM
Sbjct: 143 IFVFDSLPSYTPMTKLVNWLEPLTVTVPSLLHYCDVDRSKSDLSTVRWKTSRPM 196

[Close]

BLAST of HG10006025 vs. ExPASy TrEMBL
Match: A0A6J1DRI2 (uncharacterized protein LOC111022515 OS=Momordica charantia OX=3673 GN=LOC111022515 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 38/95 (40.00%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 2   IFVFDLLPSITSIKKLETILEPLSHTLLSLLNYCD-MKRFKPDLEMGQWCIFRPMKKNMQ 61
           IFV+D LP   S  KL T + PLSHT+ SLL  C  M      L+   W ++ P     Q
Sbjct: 43  IFVYDPLPGHISTSKLMTDIRPLSHTIPSLLYACGLMDTTDCKLKKTSWRVYHPTTDTRQ 102

Query: 62  HGSLDCGIFAVKLLEHLIIRSDIHVITQEKMTDYR 96
            GS+DCGIFA K LE+L+  + +  + Q +++  R
Sbjct: 103 KGSIDCGIFACKFLEYLVSGNSLETLVQAEVSHIR 137

The following BLAST results are available for this feature:

BLAST of HG10006025 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875042.1	4.5e-24	60.00	uncharacterized protein LOC120067568 [Benincasa hispida]	[more]
XP_038874902.1	8.8e-20	57.89	uncharacterized protein LOC120067405 [Benincasa hispida]	[more]
XP_022155371.1	2.6e-08	40.00	uncharacterized protein LOC111022515 [Momordica charantia]	[more]
XP_038902498.1	2.9e-07	64.00	uncharacterized protein LOC120089158 [Benincasa hispida]	[more]
XP_038899753.1	2.3e-04	55.56	uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 unchara...	[more]

BLAST of HG10006025 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10006025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRI2	1.3e-08	40.00	uncharacterized protein LOC111022515 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of HG10006025 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 1..96 e-value: 7.9E-8 score: 33.9
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 2..95 e-value: 1.6E-5 score: 24.8
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 2..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10006025.1	HG10006025.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity