HG10005990 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005990
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase family protein
Location	Chr07: 10704761 .. 10707823 (+)
RNA-Seq Expression	HG10005990
Synteny	HG10005990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGAGTTCGTATCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCTAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTGCCCACCATTGCCATTGACCTAGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATCGCCCATCGCCTTGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGTTGAAGCGCGGGATACCAAGTATGTCCTCTTACTCTCGTCGCTCAGACGTGTTTATTGCTGCCATTTCCTTAGCATGATTAAGTTTTTGGGCTTGTAGCTGATTATTACATTAGTTTGTGTTGCCCTAGGCGTGGTCTGTAATGTTTAGTCTGCAACTCCATTTGCTATTCGGGTTACAAATGGAGGTTGAGGCTTAGGGGATTACACATCTTAGAGATAGTTCATCATTACGACTCAGAAGCTCTGTCTCCAAAGACTAATTTGTTCTTCCTATGCAACATGTTTGAGAAAAATATCATTTTAGTTTGGTGTCATTGTGGTTCATTAAGTAATTGCTCCCAATTTTGAGCTGGTTTTGTGATGATTGTAGAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAATTGCGGTTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTTGAAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGGTTTGGAATTGGATCCTGTTACTCATCAGGTTCTTCTCATACAACCTCATTTTCTTTTCCTTCTTATTTTTTGCTTTAGTACAATTATGGAATTTCTCAGAGGGCTATGCTGAAGAGGTGATGTGGACGGTATTTGTCCGCCAATATCACTGTATGTTGTTTGTGGTTTGTCATGCAGAGACGTCATGCTTGTAAATTTTAAAATAAACTATAGTACTCTGCTGGTTTTCTCGTAAATGGGAGAGCTACTAGATCCCACCTTATAACTCACATTTGACACCTCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAATGCTTGTCTTGGCAATTTCCTTCCACGGGCTAGAAGAACCTTTCCGACTTTTGAAATTGATGAAGCCTCTTAAGGAGTCAACATCGTGGTTGCTTTTCACAACCAACCTCCAAAGAGCGTTCATTTCATGTTCAACTCTCCATAACCACTTAGTAAAAAGAGAGAAATTCTCAGAATGAAGATTTTTCACTCCCAAACCTCCCAAAGGAATGATGGGTCATGATACCATTCCCATCTAACTAAATTGCACCTTCAAACTCCTTGCTACTAGCTTCTATATTTTCTCATTCTTCTGTTGATAATTGCCTTTCTGGAGGTTGTTTCTATTTAACCAATGAGACAATCAAAGAGACGTTTTTTCGAGATGATTTTGAGGAGTCTGATAAGAAGGAGCCTGTAGTAAGTTTTAGTCGTGAAGACTTCAATCAGATTGTTTTCATTCTTCTCTGGAAAAAGTGAAGCTCCGAAGCTCCTGAAAAGGTTTTTAATGATGAAGCTATTGTAGAGGCTTTAGGCCTAAGCCTAATCCAAATCTTCAAGCATCTTCTTCAGAGGGCGTTGAGAAGTTCACTTATCTTCTTAAAGTTTGTGAACTTGAACTGTAAGAGATTCCTGCCAGAGCCACTCGTTAAGGTGTTTAAGTGTCTTAAGCTATAAGGCTTTTTGGTTGCAGCTGGTTTTGTGTTGTTTATTCTAGACTAGTTATGGTACTCTTGTTGGGTTTGTTGTTCCAGTTGACTTGAGTTTTTTCATTTGTTTATTGTTTTTGGTGGCTCCATCCAGATACGTCTTCCTTACTTGTGGTGGGTTTTGTATGCGGCTTGCTTTTATCATAGTATATTTCCTGTGATTGGTTGGTTAGTTTTTTTTGTAGTCTATTTTGCTTTCTTCTTCTTTTATTTATTTTAATGTAATTGCTTCTTGTAATCTTTTCTTCTTTGGTTCCTTTTTCTAGTTGTTGGTTTTTTGTGTGTTTTCGATTTTTCCCTCCTAGGGAGGTTGTATCCTTGAACTTGTTTCCCCTCGTATTGGTGTTTCTAGATTTTTCCCATTAGGATTTAGGACACTATTCATTCTCACTACCCTTTTTTTTTTTTTTTTTTTTTTTAAGTGATAATTTCATTGATAAAATGAAATACTCGAAGAAAAAAAAGGAACCAATAAAAAAAAAATATATATATCTGAAGATATCCAAGGGATAAAAGGAACCAATCAAATGGTATACAAAAGATGTTGTAACTACTTTTGCACCTGAATGGTGTAAAATTCTAGAAGGATCGTCAATGAATAAGATTTTTTCATTCAAGTGTATCCACATCCAAATTTTGAGATATTTGGGCAATGGCTAAAGAAAGTACAAACTGTCCACACTTAGAAATTGTCTTGTTTTCCGCTAGCTAATATATATTTGTGTTTTTTTTTGTCTGTCTTTATGTTGAATTATTGTTGATTATTTTGTTCGGAAAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTACAGCTGGACTTGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTTACAGTTGAATCTACTGGTGCAATCAAAGCTTCCATTGATCTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGATGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATTCGAGGTGGATGA

mRNA sequence

ATGGAAGGGAGTTCGTATCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCTAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTGCCCACCATTGCCATTGACCTAGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATCGCCCATCGCCTTGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGTTGAAGCGCGGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAATTGCGGTTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTTGAAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGGTTTGGAATTGGATCCTGTTACTCATCAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTACAGCTGGACTTGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTTACAGTTGAATCTACTGGTGCAATCAAAGCTTCCATTGATCTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGATGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATTCGAGGTGGATGA

Coding sequence (CDS)

ATGGAAGGGAGTTCGTATCAGCGGTTTCCAAAGGTGAAAATCCGGGAACTCCGAGATGATTACGCCAAATTCGAGCTCCGCGACACCGACGCTAGCATGGCCAACGCCCTCCGCCGCGTCATGATCGCCGAGGTGCCCACCATTGCCATTGACCTAGTAGAAATTGAAGTGAACTCCTCTGTTCTCAACGACGAGTTCATCGCCCATCGCCTTGGTCTCATTCCCCTCACCAGCGAGCGTGCCATGTCCATGCGCTTCTCTCGCGACTGTGATGCTTGCGATGGTGATGGCCAGTGCGAGTTTTGCTCTGTCGAGTTTCACCTTCGCGCCAAGTGCCACTCCGACCAAACCCTAGACGTCACCAGCAAGGATCTCTATAGTTCTGATCACACTGTTGTCCCCGTTGATTTCTCTGATTCTGCTGCAGCTAGTGTTGAAGCGCGGGATACCAAAGGAATAATCATTGTGAAGCTACGTCGTGGTCAAGAATTGCGGTTGAGAGCCATAGCTAGGAAGGGCATTGGTAAAGATCATGCAAAATGGTCGCCTGCAGCAACCGTGACATTCATGTTGAAGCCAAACATTCACATCAATGAAGACCTAATGGAAACATTAACTCTAGAGGAAAAGAGAACTTGGGTTGAAAGTTGCCCAACCAGAGGTTTGGAATTGGATCCTGTTACTCATCAGGTTATGGTGGTTGATCCTGAGGCATACACTTATGATGATGAGGTGATTAAGAAAGCAGAAGCTATGGGTACAGCTGGACTTGTGGATATTACTGCAAAAGAAGATAGTTTTATCTTTACAGTTGAATCTACTGGTGCAATCAAAGCTTCCATTGATCTCAATGCCATAGATATCCTGAAACAGAAGCTGGATGCAGTCCGTCTTTCAGATGATACTGTAGAAGCAGATGATCAGTTTGGTGAGTTAGGTGCACATATTCGAGGTGGATGA

Protein sequence

MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKASIDLNAIDILKQKLDAVRLSDDTVEADDQFGELGAHIRGG

Homology

[Close]

BLAST of HG10005990 vs. NCBI nr
Match: XP_004138895.1 (DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343.1 hypothetical protein Csa_006771 [Cucumis sativus])

HSP 1 Score: 591.3 bits (1523), Expect = 5.1e-165
Identity = 305/320 (95.31%), Postives = 311/320 (97.19%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEEKRTWVESCPTR  ELD VTHQVMVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITA+EDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. NCBI nr
Match: XP_008441761.1 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucumis melo])

HSP 1 Score: 590.5 bits (1521), Expect = 8.7e-165
Identity = 304/320 (95.00%), Postives = 311/320 (97.19%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEEK TWVESCPTR  ELDPVTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITA+EDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. NCBI nr
Match: XP_038891253.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida])

HSP 1 Score: 582.0 bits (1499), Expect = 3.1e-162
Identity = 300/320 (93.75%), Postives = 308/320 (96.25%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCH+DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHNDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+ EA D+KGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDSKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLM+TLT EEKRTWVESCPTR  E D VTHQV VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMDTLTPEEKRTWVESCPTRVFEFDSVTHQVTVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. NCBI nr
Match: XP_022147788.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >XP_022147789.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia])

HSP 1 Score: 582.0 bits (1499), Expect = 3.1e-162
Identity = 299/320 (93.44%), Postives = 309/320 (96.56%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDL SSDHTVVPVDF+DSAAAS E  DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEE++TWVESCPTR  E+DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. NCBI nr
Match: XP_022927752.1 (DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022927753.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >XP_022988851.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_022988852.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita maxima] >XP_023530056.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023530057.1 DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita pepo subsp. pepo] >KAG6588685.1 DNA-directed RNA polymerases II, IV and V subunit 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 579.3 bits (1492), Expect = 2.0e-161
Identity = 298/320 (93.12%), Postives = 308/320 (96.25%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEEK +WVES PT+  ELDPVTHQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. ExPASy Swiss-Prot
Match: Q39211 (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3702 GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 1.2e-140
Identity = 255/320 (79.69%), Postives = 292/320 (91.25%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+I INED+M+TL+ EEK   +ES PT+   +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMG  GL++I+ K+DSFIFTVESTGA+KAS + LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of HG10005990 vs. ExPASy Swiss-Prot
Match: Q39212 (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702 GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 461.5 bits (1186), Expect = 8.0e-129
Identity = 238/320 (74.38%), Postives = 279/320 (87.19%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVT+M +P+I INE++M TLT EEK   +ES PT+   +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMG  GL++I  K DSF+FTVESTGA+KAS + LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           D+TVEADDQFGELGAH+R G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

[Close]

BLAST of HG10005990 vs. ExPASy Swiss-Prot
Match: Q54DH7 (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689 GN=polr2c PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 5.6e-66
Identity = 145/297 (48.82%), Postives = 194/297 (65.32%), Query Frame = 0


Query: 4   SSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLN 63
           S   R P+++I E+++D   F L +TD S+ANALRRVMIAEVPT+ IDLVE E N+SVL 
Sbjct: 6   SQLTRQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLC 65

Query: 64  DEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSK 123
           DEFIAHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS 
Sbjct: 66  DEFIAHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSS 125

Query: 124 DLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSP 183
           DL S +  V+PV    +++ S +      I IVKLRRGQE++LRAIA+KG+GK+HAKWSP
Sbjct: 126 DLLSQNSAVIPVSSQVTSSNSEQE-----IPIVKLRRGQEIKLRAIAKKGVGKEHAKWSP 185

Query: 184 AATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDP--VTHQVMVVDPEAYTY 243
           +   T+  +P I +N++ ++ LT ++K  WV SCPT+     P   T QV + DP    Y
Sbjct: 186 SCVATYQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVY 245

Query: 244 DDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK-ASIDLNAIDILKQKLDAVR 298
             E  KKAE+ G   LV +  K+D FIFTVES+GA+K   I L AI I+K+KL  ++
Sbjct: 246 CLECKKKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294

[Close]

BLAST of HG10005990 vs. ExPASy Swiss-Prot
Match: Q3T0Q3 (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-44
Identity = 99/190 (52.11%), Postives = 130/190 (68.42%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL D+  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      +  +   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMLKPN 195
           A V F   P+
Sbjct: 183 AGVAFEYDPD 189

[Close]

BLAST of HG10005990 vs. ExPASy Swiss-Prot
Match: P97760 (DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c PE=1 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 6.0e-44
Identity = 98/190 (51.58%), Postives = 130/190 (68.42%), Query Frame = 0


Query: 6   YQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVLNDE 65
           Y   P V+I EL ++  KF + +TD ++AN++RRV IAEVP IAID V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-SMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C+ DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAKWSPA 185
           L S+   V+PV   +      +  +   I+IVKLR+GQELRLRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMLKPN 195
           A V F   P+
Sbjct: 183 AGVAFEYDPD 189

[Close]

BLAST of HG10005990 vs. ExPASy TrEMBL
Match: A0A0A0LHS1 (RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 2.5e-165
Identity = 305/320 (95.31%), Postives = 311/320 (97.19%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEEKRTWVESCPTR  ELD VTHQVMVVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKRTWVESCPTRVFELDTVTHQVMVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITA+EDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. ExPASy TrEMBL
Match: A0A1S3B3P9 (LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucumis melo OX=3656 GN=LOC103485820 PE=3 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 4.2e-165
Identity = 304/320 (95.00%), Postives = 311/320 (97.19%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSAAATGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEEK TWVESCPTR  ELDPVTHQVMVV+PEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKXTWVESCPTRVFELDPVTHQVMVVEPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITA+EDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAREDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. ExPASy TrEMBL
Match: A0A6J1D221 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia OX=3673 GN=LOC111016637 PE=3 SV=1)

HSP 1 Score: 582.0 bits (1499), Expect = 1.5e-162
Identity = 299/320 (93.44%), Postives = 309/320 (96.56%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TSKDL SSDHTVVPVDF+DSAAAS E  DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 TSKDLISSDHTVVPVDFADSAAASGEVLDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEE++TWVESCPTR  E+DP THQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEERKTWVESCPTRVFEVDPNTHQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. ExPASy TrEMBL
Match: A0A6J1JIE7 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=3661 GN=LOC111486077 PE=3 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 9.7e-162
Identity = 298/320 (93.12%), Postives = 308/320 (96.25%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEEK +WVES PT+  ELDPVTHQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. ExPASy TrEMBL
Match: A0A6J1ELW4 (DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata OX=3662 GN=LOC111434562 PE=3 SV=1)

HSP 1 Score: 579.3 bits (1492), Expect = 9.7e-162
Identity = 298/320 (93.12%), Postives = 308/320 (96.25%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           MEG+SYQRFPKVKIRELRDDYAKFEL DTD SMANALRRVMIAEVPTIAIDLVEIEVNSS
Sbjct: 1   MEGASYQRFPKVKIRELRDDYAKFELHDTDVSMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           +SKDLYSSDHTVVPVDFSDSAAA+ EA DTKGIIIVKLRRGQELRLRAIARKGIGKDHAK
Sbjct: 121 SSKDLYSSDHTVVPVDFSDSAAAAGEALDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+IHINEDLMETLTLEEK +WVES PT+  ELDPVTHQV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPSIHINEDLMETLTLEEKTSWVESSPTKVFELDPVTHQVLVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YDDEVIKKAEAMG AGLVDITAKEDSFIFTVESTGAIKAS + LNAIDILKQKLDAVRLS
Sbjct: 241 YDDEVIKKAEAMGKAGLVDITAKEDSFIFTVESTGAIKASQLILNAIDILKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 320

[Close]

BLAST of HG10005990 vs. TAIR 10
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 500.7 bits (1288), Expect = 8.4e-142
Identity = 255/320 (79.69%), Postives = 292/320 (91.25%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G++YQRFPK+KIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AIDLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEF L +KC +DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+  ++ S ++ + KGIIIVKLRRGQEL+LRAIARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVS-DSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVTFM +P+I INED+M+TL+ EEK   +ES PT+   +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMG  GL++I+ K+DSFIFTVESTGA+KAS + LNAID+LKQKLDAVRLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           DDTVEADDQFGELGAH+RGG
Sbjct: 301 DDTVEADDQFGELGAHMRGG 319

[Close]

BLAST of HG10005990 vs. TAIR 10
Match: AT2G15400.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 461.5 bits (1186), Expect = 5.7e-130
Identity = 238/320 (74.38%), Postives = 279/320 (87.19%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQVMVVDPEAYT 240
           WSPAATVT+M +P+I INE++M TLT EEK   +ES PT+   +DPVT QV+VVDPEAYT
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYT 240

Query: 241 YDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIKAS-IDLNAIDILKQKLDAVRLS 300
           YD+EVIKKAEAMG  GL++I  K DSF+FTVESTGA+KAS + LNAIDILKQKLDA+RLS
Sbjct: 241 YDEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLS 300

Query: 301 DDTVEADDQFGELGAHIRGG 320
           D+TVEADDQFGELGAH+R G
Sbjct: 301 DNTVEADDQFGELGAHMREG 319

[Close]

BLAST of HG10005990 vs. TAIR 10
Match: AT2G15400.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 328.9 bits (842), Expect = 4.4e-90
Identity = 167/231 (72.29%), Postives = 198/231 (85.71%), Query Frame = 0


Query: 1   MEGSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60
           M+G +YQRFP VKIREL+DDYAKFELR+TD SMANALRRVMI+EVPT+AI LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQTLDV 120
           VLNDEFIA RL LIPLTSERAMSMRF +DC+ C+GD  CEFCSVEF L AKC +DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLYSSDHTVVPVDFSDSAAASVEARDTKGIIIVKLRRGQELRLRAIARKGIGKDHAK 180
           TS+DLYS+D TV PVDF+ +++ S ++ + KGIII KLRRGQEL+L+A+ARKGIGKDHAK
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTS-DSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAK 180

Query: 181 WSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRGLELDPVTHQV 232
           WSPAATVT+M +P+I INE++M TLT EEK   +ES PT+   +DPVT QV
Sbjct: 181 WSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQV 230

[Close]

BLAST of HG10005990 vs. TAIR 10
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 119.0 bits (297), Expect = 6.9e-27
Identity = 98/319 (30.72%), Postives = 156/319 (48.90%), Query Frame = 0


Query: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------YSSDHTVVP---VDFSDSAAASVEARDTK------GIIIVKLRRG 182
           + DL            S + T  P     FS S  +  E  +         I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRG 242
           QE+ L A A KGIGK HAKWSP  T  + + P + +  ++ + L        V  CP   
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 LELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK 297
            +++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

[Close]

BLAST of HG10005990 vs. TAIR 10
Match: AT1G60850.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 119.0 bits (297), Expect = 6.9e-27
Identity = 98/319 (30.72%), Postives = 156/319 (48.90%), Query Frame = 0


Query: 3   GSSYQRFPKVKIRELRDDYAKFELRDTDASMANALRRVMIAEVPTIAIDLVEIEVNSSVL 62
           G+ Y  F KV +  L     +F++   DA+ ANA RR++IAEVP++AI+ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCHSDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDL-----------YSSDHTVVP---VDFSDSAAASVEARDTK------GIIIVKLRRG 182
           + DL            S + T  P     FS S  +  E  +         I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELRLRAIARKGIGKDHAKWSPAATVTFMLKPNIHINEDLMETLTLEEKRTWVESCPTRG 242
           QE+ L A A KGIGK HAKWSP  T  + + P + +  ++ + L        V  CP   
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 LELDPV---THQVMVVDPEAYTYDDEVIKKAEAMGTAGLVDITAKEDSFIFTVESTGAIK 297
            +++ +     +  V  P   T   E ++  + +     VD+ + ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

The following BLAST results are available for this feature:

BLAST of HG10005990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138895.1	5.1e-165	95.31	DNA-directed RNA polymerases II, IV and V subunit 3 [Cucumis sativus] >KGN61343....	[more]
XP_008441761.1	8.7e-165	95.00	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subuni...	[more]
XP_038891253.1	3.1e-162	93.75	DNA-directed RNA polymerases II, IV and V subunit 3-like [Benincasa hispida]	[more]
XP_022147788.1	3.1e-162	93.44	DNA-directed RNA polymerases II, IV and V subunit 3-like [Momordica charantia] >...	[more]
XP_022927752.1	2.0e-161	93.13	DNA-directed RNA polymerases II, IV and V subunit 3-like [Cucurbita moschata] >X...	[more]

BLAST of HG10005990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39211	1.2e-140	79.69	DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana OX=3...	[more]
Q39212	8.0e-129	74.38	DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana OX=3702...	[more]
Q54DH7	5.6e-66	48.82	DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum OX=44689...	[more]
Q3T0Q3	2.1e-44	52.11	DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus OX=9913 GN=POLR2C PE=1...	[more]
P97760	6.0e-44	51.58	DNA-directed RNA polymerase II subunit RPB3 OS=Mus musculus OX=10090 GN=Polr2c P...	[more]

BLAST of HG10005990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS1	2.5e-165	95.31	RPOLD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G093850 PE=3 ...	[more]
A0A1S3B3P9	4.2e-165	95.00	LOW QUALITY PROTEIN: DNA-directed RNA polymerases II, IV and V subunit 3-like OS...	[more]
A0A6J1D221	1.5e-162	93.44	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Momordica charantia ...	[more]
A0A6J1JIE7	9.7e-162	93.13	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita maxima OX=...	[more]
A0A6J1ELW4	9.7e-162	93.13	DNA-directed RNA polymerases II, IV and V subunit 3-like OS=Cucurbita moschata O...	[more]

BLAST of HG10005990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15430.1	8.4e-142	79.69	DNA-directed RNA polymerase family protein	[more]
AT2G15400.1	5.7e-130	74.38	DNA-directed RNA polymerase family protein	[more]
AT2G15400.2	4.4e-90	72.29	DNA-directed RNA polymerase family protein	[more]
AT1G60850.2	6.9e-27	30.72	DNA-directed RNA polymerase family protein	[more]
AT1G60850.1	6.9e-27	30.72	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..299 e-value: 2.3E-85 score: 299.6
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 23..293 e-value: 4.9E-17 score: 62.8
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 47..179 e-value: 1.7E-83 score: 282.2
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..183
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..182 e-value: 3.4E-33 score: 114.3
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 12..292 e-value: 1.7E-83 score: 282.2
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 10..301
None	No IPR available	PANTHER	PTHR11800:SF15	BNAA09G08480D PROTEIN	coord: 3..316
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 3..316
None	No IPR available	CDD	cd07031	RNAP_II_RPB3	coord: 10..302 e-value: 7.33997E-126 score: 358.84
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005990.1	HG10005990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity