HG10005989 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005989
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Reverse transcriptase domain-containing protein
Location	Chr07: 10704321 .. 10704473 (-)
RNA-Seq Expression	HG10005989
Synteny	HG10005989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGCTAATAGATTGAAAGGAATTCTTAAGGATATTGTCCATCCCTCTCAGCCTGCGTTTGTCCCTCATCTTCTTATCTCGGATAAAGCTCTAATTGGTTGTGAGTGCTTCCATGTGATTAAAAATGGAAAGAAAGGCAAGGTGGGTTAG

mRNA sequence

ATGTTGGCTAATAGATTGAAAGGAATTCTTAAGGATATTGTCCATCCCTCTCAGCCTGCGTTTGTCCCTCATCTTCTTATCTCGGATAAAGCTCTAATTGGTTGTGAGTGCTTCCATGTGATTAAAAATGGAAAGAAAGGCAAGGTGGGTTAG

Coding sequence (CDS)

ATGTTGGCTAATAGATTGAAAGGAATTCTTAAGGATATTGTCCATCCCTCTCAGCCTGCGTTTGTCCCTCATCTTCTTATCTCGGATAAAGCTCTAATTGGTTGTGAGTGCTTCCATGTGATTAAAAATGGAAAGAAAGGCAAGGTGGGTTAG

Protein sequence

MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG

Homology

[Close]

BLAST of HG10005989 vs. NCBI nr
Match: XP_035546588.1 (uncharacterized protein LOC118348634 [Juglans regia])

HSP 1 Score: 59.7 bits (143), Expect = 8.3e-06
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1   MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           +LANRLKG+L +I+ P+Q AF+P  LISD  L+  E  H +K  KKGK+G
Sbjct: 497 VLANRLKGVLNEIISPNQSAFIPGRLISDNILVAYEVLHSMKVRKKGKMG 546

[Close]

BLAST of HG10005989 vs. NCBI nr
Match: XP_035544594.1 (uncharacterized protein LOC118347987 [Juglans regia])

HSP 1 Score: 59.7 bits (143), Expect = 8.3e-06
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1   MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           +LANRLKG+L +I+ P+Q AF+P  LISD  L+  E  H +K  KKGK+G
Sbjct: 497 VLANRLKGVLNEIISPNQSAFIPGRLISDNILVAYEVLHSMKVRKKGKMG 546

[Close]

BLAST of HG10005989 vs. NCBI nr
Match: XP_010682691.2 (PREDICTED: uncharacterized protein LOC104897505 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           +LANR+K +L D++H SQ  FVP  LI+D  L+  ECFH ++  K GK G
Sbjct: 711 VLANRMKHVLPDVIHESQNGFVPGRLITDNVLVVYECFHFLRKKKTGKKG 760

[Close]

BLAST of HG10005989 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 2   LANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           LANRLK ++  ++ P+Q AFVP   I+D A+IG EC + IKN + GK+G
Sbjct: 341 LANRLKSVMDSVISPTQSAFVPGRSITDNAIIGFECINAIKNKRYGKLG 389

[Close]

BLAST of HG10005989 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 25/50 (50.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1   MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           +LANRLK +L +++ P+Q AFVP  LI+D A++G EC H +    KGK+G
Sbjct: 350 VLANRLKQVLNELISPTQSAFVPSRLITDNAIMGFECIHSLYGRIKGKLG 399

[Close]

BLAST of HG10005989 vs. ExPASy TrEMBL
Match: A0A6P9EAZ3 (uncharacterized protein LOC118347987 OS=Juglans regia OX=51240 GN=LOC118347987 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-06
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1   MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           +LANRLKG+L +I+ P+Q AF+P  LISD  L+  E  H +K  KKGK+G
Sbjct: 497 VLANRLKGVLNEIISPNQSAFIPGRLISDNILVAYEVLHSMKVRKKGKMG 546

[Close]

BLAST of HG10005989 vs. ExPASy TrEMBL
Match: A0A6P9ERU8 (uncharacterized protein LOC118348634 OS=Juglans regia OX=51240 GN=LOC118348634 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-06
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 1   MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           +LANRLKG+L +I+ P+Q AF+P  LISD  L+  E  H +K  KKGK+G
Sbjct: 497 VLANRLKGVLNEIISPNQSAFIPGRLISDNILVAYEVLHSMKVRKKGKMG 546

[Close]

BLAST of HG10005989 vs. ExPASy TrEMBL
Match: A0A5B7AER2 (Reverse transcriptase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_022934 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.0e-06
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           MLANRLK IL DI+  SQ AFVP  LIS   L+  E  H +KN +KGK+G
Sbjct: 101 MLANRLKSILPDIIDESQSAFVPGRLISVNILVAFEIIHCLKNRRKGKMG 150

[Close]

BLAST of HG10005989 vs. ExPASy TrEMBL
Match: A0A6J1DUG8 (uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024135 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-05
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 2   LANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           LANRLK ++  ++ P+Q AFVP   I+D A+IG EC + IKN + GK+G
Sbjct: 341 LANRLKSVMDSVISPTQSAFVPGRSITDNAIIGFECINAIKNKRYGKLG 389

[Close]

BLAST of HG10005989 vs. ExPASy TrEMBL
Match: A0A2K3LQD7 (Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g036763 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-05
Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   MLANRLKGILKDIVHPSQPAFVPHLLISDKALIGCECFHVIKNGKKGKVG 51
           ++ANR+K IL DI+   Q AFV   LI+D ALI  ECFH +K  KKGK G
Sbjct: 81  VIANRIKPILPDIIDEEQSAFVQGRLITDNALIAMECFHWMKKKKKGKKG 130

The following BLAST results are available for this feature:

BLAST of HG10005989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_035546588.1	8.3e-06	54.00	uncharacterized protein LOC118348634 [Juglans regia]	[more]
XP_035544594.1	8.3e-06	54.00	uncharacterized protein LOC118347987 [Juglans regia]	[more]
XP_010682691.2	2.4e-05	50.00	PREDICTED: uncharacterized protein LOC104897505 [Beta vulgaris subsp. vulgaris]	[more]
XP_022157437.1	2.4e-05	51.02	uncharacterized protein LOC111024135 [Momordica charantia]	[more]
XP_022155286.1	3.2e-05	50.00	uncharacterized protein LOC111022423 [Momordica charantia]	[more]

BLAST of HG10005989 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P9EAZ3	4.0e-06	54.00	uncharacterized protein LOC118347987 OS=Juglans regia OX=51240 GN=LOC118347987 P...	[more]
A0A6P9ERU8	4.0e-06	54.00	uncharacterized protein LOC118348634 OS=Juglans regia OX=51240 GN=LOC118348634 P...	[more]
A0A5B7AER2	9.0e-06	58.00	Reverse transcriptase domain-containing protein OS=Davidia involucrata OX=16924 ...	[more]
A0A6J1DUG8	1.2e-05	51.02	uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A2K3LQD7	1.5e-05	56.00	Ribonuclease H (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g036763 PE=4 SV...	[more]

BLAST of HG10005989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005989.1	HG10005989.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid