HG10005977 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005977
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Mitotic-spindle organizing protein 1
Location	Chr07: 10471200 .. 10471415 (-)
RNA-Seq Expression	HG10005977
Synteny	HG10005977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCTAGAGGCTGCACGAACCGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACCCGATGCTGGGATTGATCGCCACACCCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTACGCCGGGAGCCACCCTCATCAGAGACCGTCGTCTCCAGTAACAAGTCATAA

mRNA sequence

ATGGATCTAGAGGCTGCACGAACCGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACCCGATGCTGGGATTGATCGCCACACCCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTACGCCGGGAGCCACCCTCATCAGAGACCGTCGTCTCCAGTAACAAGTCATAA

Coding sequence (CDS)

ATGGATCTAGAGGCTGCACGAACCGCTCGGGAATCACTAGACCTTGCATTTCATATGTCTAACGTACCCGATGCTGGGATTGATCGCCACACCCTCTCTGTCCTCATTGCTCTTTGTGACATGGGTGTGAACCCTGAAGCACTGGCTGCTGTTGTCAAGGAACTACGCCGGGAGCCACCCTCATCAGAGACCGTCGTCTCCAGTAACAAGTCATAA

Protein sequence

MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPPSSETVVSSNKS

Homology

[Close]

BLAST of HG10005977 vs. NCBI nr
Match: XP_011649034.1 (mitotic-spindle organizing protein 1A [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 7.1e-27
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV DAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETVVSSNKS 72
          SS+T+VSSNKS
Sbjct: 61 SSDTIVSSNKS 71

[Close]

BLAST of HG10005977 vs. NCBI nr
Match: XP_038889535.1 (mitotic-spindle organizing protein 1B [Benincasa hispida] >XP_038889536.1 mitotic-spindle organizing protein 1B [Benincasa hispida])

HSP 1 Score: 129.8 bits (325), Expect = 9.3e-27
Identity = 68/70 (97.14%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV DAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETVVSSNK 71
          SSETVVSSNK
Sbjct: 61 SSETVVSSNK 70

[Close]

BLAST of HG10005977 vs. NCBI nr
Match: XP_008441751.1 (PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441752.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441753.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441755.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441756.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_008441757.1 PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 3.5e-26
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV D+GIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDSGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETVVSSNKS 72
          SSET VSSNKS
Sbjct: 61 SSETNVSSNKS 71

[Close]

BLAST of HG10005977 vs. NCBI nr
Match: XP_022973921.1 (mitotic-spindle organizing protein 1B-like [Cucurbita maxima] >XP_022973922.1 mitotic-spindle organizing protein 1B-like [Cucurbita maxima])

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV DAGIDRHTLSVLIALCDMGVNPEALAAVVKEL REPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60

Query: 61 SSETVVSSNKS 72
          SSET+ S NKS
Sbjct: 61 SSETITSGNKS 71

[Close]

BLAST of HG10005977 vs. NCBI nr
Match: KAG6598967.1 (ALBINO3-like protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 64/71 (90.14%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1   MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
           MD EAARTARESLDLAFHM NV DAGIDRHTLSVLIALCDMGVNPEALAAVVKEL REPP
Sbjct: 163 MDPEAARTARESLDLAFHMCNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 222

Query: 61  SSETVVSSNKS 72
           SSET++S NKS
Sbjct: 223 SSETIISGNKS 233

[Close]

BLAST of HG10005977 vs. ExPASy Swiss-Prot
Match: Q9M0N8 (Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana OX=3702 GN=GIP1 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.5e-19
Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREP- 60
          MD EA+RTARESL+L F MSN+ D G+DRHTLSVLIALCD+GVNPEALA VVKELRRE  
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRESI 60

Query: 61 PSSETVVSS 69
          P S T   S
Sbjct: 61 PDSVTTTPS 69

[Close]

BLAST of HG10005977 vs. ExPASy Swiss-Prot
Match: Q9C9T3 (Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana OX=3702 GN=GIP2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 8.2e-18
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          M+ EAA TARESL+L F MSN+ + G+DRHTLSVLIALCD+G+NPEALA +VKELRR+  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 61 SSETVV 67
          ++ T V
Sbjct: 61 TTTTTV 66

[Close]

BLAST of HG10005977 vs. ExPASy Swiss-Prot
Match: A9NKD9 (Mitotic-spindle organizing protein 1 OS=Picea sitchensis OX=3332 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 9.1e-17
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRRE 59
          MD  AA+ ARESLDLAF +SN    G+DRHTLS+LIALC+ GVNPEALAAVVKELRRE
Sbjct: 1  MDRTAAQNARESLDLAFSISNFLQTGLDRHTLSILIALCEHGVNPEALAAVVKELRRE 58

[Close]

BLAST of HG10005977 vs. ExPASy Swiss-Prot
Match: B5FXZ4 (Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata OX=59729 GN=mzt1 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-08
Identity = 23/48 (47.92%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 10 RESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRR 58
          RE++D+ F +S + + G+D  TLS+ + LC+ G+NPEAL++V+KELR+
Sbjct: 12 RETMDVLFEISRILNTGLDMETLSICVRLCEQGINPEALSSVIKELRK 59

[Close]

BLAST of HG10005977 vs. ExPASy Swiss-Prot
Match: Q0VFD6 (Mitotic-spindle organizing protein 1 OS=Xenopus tropicalis OX=8364 GN=mzt1 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.5e-08
Identity = 27/62 (43.55%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 10 RESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPPSSETVVSSN 69
          RE++D+   +S + + G+D  TLS+ + LC+ G+NPEAL++V+KELRR   +SET+ +S 
Sbjct: 12 RETMDVLLEISRLLNTGLDMETLSICVRLCEQGINPEALSSVIKELRR---ASETLKASE 70

Query: 70 KS 72
           +
Sbjct: 72 ST 70

[Close]

BLAST of HG10005977 vs. ExPASy TrEMBL
Match: A0A0A0LMZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094370 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.5e-27
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV DAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETVVSSNKS 72
          SS+T+VSSNKS
Sbjct: 61 SSDTIVSSNKS 71

[Close]

BLAST of HG10005977 vs. ExPASy TrEMBL
Match: A0A1S3B468 (mitotic-spindle organizing protein 1A-like OS=Cucumis melo OX=3656 GN=LOC103485818 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.7e-26
Identity = 67/71 (94.37%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV D+GIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDSGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSETVVSSNKS 72
          SSET VSSNKS
Sbjct: 61 SSETNVSSNKS 71

[Close]

BLAST of HG10005977 vs. ExPASy TrEMBL
Match: A0A6J1I8U7 (mitotic-spindle organizing protein 1B-like OS=Cucurbita maxima OX=3661 GN=LOC111472550 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.5e-26
Identity = 65/71 (91.55%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV DAGIDRHTLSVLIALCDMGVNPEALAAVVKEL REPP
Sbjct: 1  MDPEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELSREPP 60

Query: 61 SSETVVSSNKS 72
          SSET+ S NKS
Sbjct: 61 SSETITSGNKS 71

[Close]

BLAST of HG10005977 vs. ExPASy TrEMBL
Match: A0A5D3D1N9 (Mitotic-spindle organizing protein 1A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003990 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.2e-25
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV DAGIDRHTLSVLIALCDMGVNPEALAAVVKELR+EPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRQEPP 60

Query: 61 SSETVVS-SNKS 72
          +SET++S SNKS
Sbjct: 61 ASETIISASNKS 72

[Close]

BLAST of HG10005977 vs. ExPASy TrEMBL
Match: A0A5D3DEX1 (Mitotic-spindle organizing protein 1A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001260 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.1e-24
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          MD EAARTARESLDLAFHMSNV D+GIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP
Sbjct: 1  MDQEAARTARESLDLAFHMSNVLDSGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60

Query: 61 SSET 65
          SSET
Sbjct: 61 SSET 64

[Close]

BLAST of HG10005977 vs. TAIR 10
Match: AT4G09550.1 (AtGCP3 interacting protein 1 )

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-20
Identity = 51/69 (73.91%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREP- 60
          MD EA+RTARESL+L F MSN+ D G+DRHTLSVLIALCD+GVNPEALA VVKELRRE  
Sbjct: 1  MDEEASRTARESLELVFRMSNILDTGLDRHTLSVLIALCDLGVNPEALATVVKELRRESI 60

Query: 61 PSSETVVSS 69
          P S T   S
Sbjct: 61 PDSVTTTPS 69

[Close]

BLAST of HG10005977 vs. TAIR 10
Match: AT1G73790.1 (Protein of unknown function (DUF3743) )

HSP 1 Score: 90.5 bits (223), Expect = 5.8e-19
Identity = 44/66 (66.67%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MDLEAARTARESLDLAFHMSNVPDAGIDRHTLSVLIALCDMGVNPEALAAVVKELRREPP 60
          M+ EAA TARESL+L F MSN+ + G+DRHTLSVLIALCD+G+NPEALA +VKELRR+  
Sbjct: 1  MNQEAAETARESLELVFRMSNILETGLDRHTLSVLIALCDIGLNPEALATLVKELRRDSA 60

Query: 61 SSETVV 67
          ++ T V
Sbjct: 61 TTTTTV 66

The following BLAST results are available for this feature:

BLAST of HG10005977 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649034.1	7.1e-27	94.37	mitotic-spindle organizing protein 1A [Cucumis sativus]	[more]
XP_038889535.1	9.3e-27	97.14	mitotic-spindle organizing protein 1B [Benincasa hispida] >XP_038889536.1 mitoti...	[more]
XP_008441751.1	3.5e-26	94.37	PREDICTED: mitotic-spindle organizing protein 1A-like [Cucumis melo] >XP_0084417...	[more]
XP_022973921.1	1.8e-25	91.55	mitotic-spindle organizing protein 1B-like [Cucurbita maxima] >XP_022973922.1 mi...	[more]
KAG6598967.1	3.0e-25	90.14	ALBINO3-like protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of HG10005977 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0N8	1.5e-19	73.91	Mitotic-spindle organizing protein 1B OS=Arabidopsis thaliana OX=3702 GN=GIP1 PE...	[more]
Q9C9T3	8.2e-18	66.67	Mitotic-spindle organizing protein 1A OS=Arabidopsis thaliana OX=3702 GN=GIP2 PE...	[more]
A9NKD9	9.1e-17	75.86	Mitotic-spindle organizing protein 1 OS=Picea sitchensis OX=3332 PE=3 SV=1	[more]
B5FXZ4	2.7e-08	47.92	Mitotic-spindle organizing protein 1 OS=Taeniopygia guttata OX=59729 GN=mzt1 PE=...	[more]
Q0VFD6	4.5e-08	43.55	Mitotic-spindle organizing protein 1 OS=Xenopus tropicalis OX=8364 GN=mzt1 PE=3 ...	[more]

BLAST of HG10005977 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMZ6	3.5e-27	94.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G094370 PE=3 SV=1	[more]
A0A1S3B468	1.7e-26	94.37	mitotic-spindle organizing protein 1A-like OS=Cucumis melo OX=3656 GN=LOC1034858...	[more]
A0A6J1I8U7	8.5e-26	91.55	mitotic-spindle organizing protein 1B-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A5D3D1N9	3.2e-25	90.28	Mitotic-spindle organizing protein 1A-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3DEX1	6.1e-24	95.31	Mitotic-spindle organizing protein 1A-like OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of HG10005977 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09550.1	1.1e-20	73.91	AtGCP3 interacting protein 1	[more]
AT1G73790.1	5.8e-19	66.67	Protein of unknown function (DUF3743)	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022214	Mitotic-spindle organizing protein 1	PFAM	PF12554	MOZART1	coord: 10..56 e-value: 4.3E-18 score: 64.8
IPR022214	Mitotic-spindle organizing protein 1	PANTHER	PTHR28520	MITOTIC-SPINDLE ORGANIZING PROTEIN 1	coord: 1..68
None	No IPR available	PANTHER	PTHR28520:SF10	MITOTIC-SPINDLE ORGANIZING PROTEIN 1A-LIKE	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005977.1	HG10005977.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033566	gamma-tubulin complex localization
biological_process	GO:0051415	microtubule nucleation by interphase microtubule organizing center
biological_process	GO:0090307	mitotic spindle assembly
cellular_component	GO:0000931	gamma-tubulin large complex
cellular_component	GO:0031021	interphase microtubule organizing center
cellular_component	GO:0005819	spindle