HG10005959 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005959
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	LUC7 related protein
Location	Chr07: 9785375 .. 9785907 (-)
RNA-Seq Expression	HG10005959
Synteny	HG10005959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGCTTTTAGAAGGCAACTGGACCAGCTAATGGGTGCGAATCGAAATGGCGACGTGCAGGAGGTTAGCCGCAAGTACTACGACCGCGATGTGTGCCGCATGTTCTTAGTTGGGCTTTGTCCCCATGAGCTCTTCCAACTCACGGTTAGATCAATTCAATCTTTCCTTCATTTCCCACCTCGTCTTTTGTTTAGGGACACTTTTTTTAGTCAGAACACCGCCCGGCAACTGTTCTGGAGCTTTCTTTGCTGGTTATTGAGTTTTTGTTGGTTTAGTTGTTAGGAAAAATCTGGGTGGTCAACCGTCTGTAAATGGAAGGGTGGAGGGAAAAATGCCGAGCATAATTTGTTTTTTTGTTGTGGGAAATTGATTTCTGCTATCAACTATTTGGGTTTTTTCTTCTTCTTTTTGTTAATACATTAATTTATTTTTACAATATTTTAATTAAATTCATTTTTCTGTTTCAGAAAATGGATATGGGTCCTTGTCCGAAGATCCACTCCTTGCAACTTAGGAAAGAGTATCCTTGA

mRNA sequence

ATGGATGCTTTTAGAAGGCAACTGGACCAGCTAATGGGTGCGAATCGAAATGGCGACGTGCAGGAGGTTAGCCGCAAGTACTACGACCGCGATGTGTGCCGCATGTTCTTAGTTGGGCTTTGTCCCCATGAGCTCTTCCAACTCACGAAAATGGATATGGGTCCTTGTCCGAAGATCCACTCCTTGCAACTTAGGAAAGAGTATCCTTGA

Coding sequence (CDS)

ATGGATGCTTTTAGAAGGCAACTGGACCAGCTAATGGGTGCGAATCGAAATGGCGACGTGCAGGAGGTTAGCCGCAAGTACTACGACCGCGATGTGTGCCGCATGTTCTTAGTTGGGCTTTGTCCCCATGAGCTCTTCCAACTCACGAAAATGGATATGGGTCCTTGTCCGAAGATCCACTCCTTGCAACTTAGGAAAGAGTATCCTTGA

Protein sequence

MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQLRKEYP

Homology

[Close]

BLAST of HG10005959 vs. NCBI nr
Match: KAG7036822.1 (putative RNA-binding protein Luc7-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. NCBI nr
Match: XP_038889987.1 (putative RNA-binding protein Luc7-like 2 isoform X2 [Benincasa hispida] >XP_038889988.1 putative RNA-binding protein Luc7-like 2 isoform X2 [Benincasa hispida] >XP_038889989.1 putative RNA-binding protein Luc7-like 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. NCBI nr
Match: XP_022998948.1 (putative RNA-binding protein Luc7-like 2 [Cucurbita maxima])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. NCBI nr
Match: XP_031736790.1 (putative RNA-binding protein Luc7-like 2 isoform X3 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. NCBI nr
Match: XP_038889990.1 (putative RNA-binding protein Luc7-like 2 isoform X3 [Benincasa hispida])

HSP 1 Score: 148.3 bits (373), Expect = 2.5e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. ExPASy Swiss-Prot
Match: Q9USM4 (U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=usp106 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-13
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 0


Query: 5  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQL 64
          R+ ++QLMG+N +         + DR VCR FL G+CPH++F  TKMD+GPCPKIHS +L
Sbjct: 6  RKIIEQLMGSNLSNFTSRGLVHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKIHSDKL 65

Query: 65 RKEY 69
          + +Y
Sbjct: 66 KSDY 69

[Close]

BLAST of HG10005959 vs. ExPASy Swiss-Prot
Match: Q54XQ8 (Luc7-like protein OS=Dictyostelium discoideum OX=44689 GN=crop PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-11
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRN---GDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKM-DMGPC 60
          MDA R QLD+ +G +RN    D  +V   + D D+C+ FL GLCPHELF    + D+GPC
Sbjct: 1  MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPDICKFFLCGLCPHELFTNANIRDLGPC 60

Query: 61 PKIHSLQLRKEY 69
           K+H     K+Y
Sbjct: 61 SKLHDENCVKQY 72

[Close]

BLAST of HG10005959 vs. ExPASy Swiss-Prot
Match: Q9Y383 (Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens OX=9606 GN=LUC7L2 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-11
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQL 64
          R  LDQLMG +R+GD      K+ D  VC+  L+  CPH++   T+MD+G C K+H L L
Sbjct: 8  RAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLAL 67

Query: 65 RKEY 69
          R +Y
Sbjct: 68 RADY 71

[Close]

BLAST of HG10005959 vs. ExPASy Swiss-Prot
Match: Q7TNC4 (Putative RNA-binding protein Luc7-like 2 OS=Mus musculus OX=10090 GN=Luc7l2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-11
Identity = 29/64 (45.31%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 5  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQL 64
          R  LDQLMG +R+GD      K+ D  VC+  L+  CPH++   T+MD+G C K+H L L
Sbjct: 8  RAMLDQLMGTSRDGDTTRQRIKFSDDRVCKSHLLNCCPHDVLSGTRMDLGECLKVHDLAL 67

Query: 65 RKEY 69
          R +Y
Sbjct: 68 RADY 71

[Close]

BLAST of HG10005959 vs. ExPASy Swiss-Prot
Match: Q9NQ29 (Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens OX=9606 GN=LUC7L PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-10
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 0


Query: 5  RRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIHSLQL 64
          R  LDQLMG  R+GD      K+ D  VC+  L+  CPH++   T+MD+G C KIH L L
Sbjct: 8  RALLDQLMGTARDGDETRQRVKFTDDRVCKSHLLDCCPHDILAGTRMDLGECTKIHDLAL 67

Query: 65 RKEY 69
          R +Y
Sbjct: 68 RADY 71

[Close]

BLAST of HG10005959 vs. ExPASy TrEMBL
Match: A0A6J1KI81 (putative RNA-binding protein Luc7-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111493454 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. ExPASy TrEMBL
Match: A0A5D3DFM5 (Putative RNA-binding protein Luc7-like 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00620 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. ExPASy TrEMBL
Match: A0A5A7SSI6 (Putative RNA-binding protein Luc7-like 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G00100 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. ExPASy TrEMBL
Match: A0A0A0LKT3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G099460 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. ExPASy TrEMBL
Match: A0A6J1CRX6 (putative RNA-binding protein Luc7-like 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014201 PE=3 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH
Sbjct: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. TAIR 10
Match: AT3G03340.1 (LUC7 related protein )

HSP 1 Score: 134.8 bits (338), Expect = 2.6e-32
Identity = 59/68 (86.76%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDA R+QLD LMGANRNGDVQEV+RKYYDRDVCR++L GLCPH+LFQLTKMDMGPCPK+H
Sbjct: 1  MDAIRKQLDVLMGANRNGDVQEVNRKYYDRDVCRLYLSGLCPHDLFQLTKMDMGPCPKVH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. TAIR 10
Match: AT5G17440.1 (LUC7 related protein )

HSP 1 Score: 133.7 bits (335), Expect = 5.8e-32
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQEVSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPCPKIH 60
          MDA R+QLD LMGANRNGDV EV+RKYYDRDVCR++L GLCPHELFQLTKMDMGPCPK+H
Sbjct: 1  MDAMRKQLDVLMGANRNGDVTEVNRKYYDRDVCRLYLSGLCPHELFQLTKMDMGPCPKVH 60

Query: 61 SLQLRKEY 69
          SLQLRKEY
Sbjct: 61 SLQLRKEY 68

[Close]

BLAST of HG10005959 vs. TAIR 10
Match: AT5G51410.1 (LUC7 N_terminus domain-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPC 60
          MDA R  LD+LMGA RN   +E       K+ DR+VC  ++V  CPH+LF  TK D+G C
Sbjct: 1  MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60

Query: 61 PKIHSLQLRKEY 69
           +IH  +L++ +
Sbjct: 61 SRIHDPKLKESF 72

[Close]

BLAST of HG10005959 vs. TAIR 10
Match: AT5G51410.2 (LUC7 N_terminus domain-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPC 60
          MDA R  LD+LMGA RN   +E       K+ DR+VC  ++V  CPH+LF  TK D+G C
Sbjct: 1  MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60

Query: 61 PKIHSLQLRKEY 69
           +IH  +L++ +
Sbjct: 61 SRIHDPKLKESF 72

[Close]

BLAST of HG10005959 vs. TAIR 10
Match: AT5G51410.3 (LUC7 N_terminus domain-containing protein )

HSP 1 Score: 65.1 bits (157), Expect = 2.6e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 1  MDAFRRQLDQLMGANRNGDVQE----VSRKYYDRDVCRMFLVGLCPHELFQLTKMDMGPC 60
          MDA R  LD+LMGA RN   +E       K+ DR+VC  ++V  CPH+LF  TK D+G C
Sbjct: 1  MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60

Query: 61 PKIHSLQLRKEY 69
           +IH  +L++ +
Sbjct: 61 SRIHDPKLKESF 72

The following BLAST results are available for this feature:

BLAST of HG10005959 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036822.1	2.5e-32	100.00	putative RNA-binding protein Luc7-like 1, partial [Cucurbita argyrosperma subsp....	[more]
XP_038889987.1	2.5e-32	100.00	putative RNA-binding protein Luc7-like 2 isoform X2 [Benincasa hispida] >XP_0388...	[more]
XP_022998948.1	2.5e-32	100.00	putative RNA-binding protein Luc7-like 2 [Cucurbita maxima]	[more]
XP_031736790.1	2.5e-32	100.00	putative RNA-binding protein Luc7-like 2 isoform X3 [Cucumis sativus]	[more]
XP_038889990.1	2.5e-32	100.00	putative RNA-binding protein Luc7-like 2 isoform X3 [Benincasa hispida]	[more]

BLAST of HG10005959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9USM4	1.6e-13	50.00	U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe (strain 972 / AT...	[more]
Q54XQ8	2.5e-11	45.83	Luc7-like protein OS=Dictyostelium discoideum OX=44689 GN=crop PE=3 SV=1	[more]
Q9Y383	4.2e-11	45.31	Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens OX=9606 GN=LUC7L2 PE=1 ...	[more]
Q7TNC4	4.2e-11	45.31	Putative RNA-binding protein Luc7-like 2 OS=Mus musculus OX=10090 GN=Luc7l2 PE=1...	[more]
Q9NQ29	1.6e-10	46.88	Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens OX=9606 GN=LUC7L PE=1 S...	[more]

BLAST of HG10005959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KI81	1.2e-32	100.00	putative RNA-binding protein Luc7-like 2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5D3DFM5	1.2e-32	100.00	Putative RNA-binding protein Luc7-like 2 isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A5A7SSI6	1.2e-32	100.00	Putative RNA-binding protein Luc7-like 2 isoform X1 OS=Cucumis melo var. makuwa ...	[more]
A0A0A0LKT3	1.2e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G099460 PE=3 SV=1	[more]
A0A6J1CRX6	1.2e-32	100.00	putative RNA-binding protein Luc7-like 2 isoform X1 OS=Momordica charantia OX=36...	[more]

BLAST of HG10005959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03340.1	2.6e-32	86.76	LUC7 related protein	[more]
AT5G17440.1	5.8e-32	86.76	LUC7 related protein	[more]
AT5G51410.1	2.6e-11	44.44	LUC7 N_terminus domain-containing protein	[more]
AT5G51410.2	2.6e-11	44.44	LUC7 N_terminus domain-containing protein	[more]
AT5G51410.3	2.6e-11	44.44	LUC7 N_terminus domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004882	Luc7-related	PFAM	PF03194	LUC7	coord: 2..68 e-value: 7.6E-25 score: 88.0
IPR004882	Luc7-related	PANTHER	PTHR12375	RNA-BINDING PROTEIN LUC7-RELATED	coord: 1..68
None	No IPR available	PANTHER	PTHR12375:SF44	OS03G0843500 PROTEIN	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005959.1	HG10005959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006376	mRNA splice site selection
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0003729	mRNA binding