HG10005950 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005950
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr07: 9583638 .. 9583835 (+)
RNA-Seq Expression	HG10005950
Synteny	HG10005950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAGAAACTTATTGAAGACAACAATCGCTTAATGAGTACCATTTCGGAGCTGAAGAAAGAATTGCAAGAGGCTAAAGCTGATCGTGATAGTTTATCTAAATCTGTTCGAATGTTGAACTCTAAAACATATGATCTCGATAAGATTCTGTCCTCAGAAAAGAAAATGTCTGATAAGAAAAGGTGTCAGTTTTGA

mRNA sequence

ATGATTGAGAAACTTATTGAAGACAACAATCGCTTAATGAGTACCATTTCGGAGCTGAAGAAAGAATTGCAAGAGGCTAAAGCTGATCGTGATAGTTTATCTAAATCTGTTCGAATGTTGAACTCTAAAACATATGATCTCGATAAGATTCTGTCCTCAGAAAAGAAAATGTCTGATAAGAAAAGGTGTCAGTTTTGA

Coding sequence (CDS)

ATGATTGAGAAACTTATTGAAGACAACAATCGCTTAATGAGTACCATTTCGGAGCTGAAGAAAGAATTGCAAGAGGCTAAAGCTGATCGTGATAGTTTATCTAAATCTGTTCGAATGTTGAACTCTAAAACATATGATCTCGATAAGATTCTGTCCTCAGAAAAGAAAATGTCTGATAAGAAAAGGTGTCAGTTTTGA

Protein sequence

MIEKLIEDNNRLMSTISELKKELQEAKADRDSLSKSVRMLNSKTYDLDKILSSEKKMSDKKRCQF

Homology

[Close]

BLAST of HG10005950 vs. NCBI nr
Match: TYK01584.1 (putative envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 4.6e-04
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 5   LIEDNNRLMSTISELKKELQEAKADRDSLSKSVRMLNSKTYDLDKILSSEKKMSDKK 62
           L ++N RLM  ISELK EL+ AK + D+L+KSVRML+  T  LD+ILS EK  +DKK
Sbjct: 118 LTKENLRLMEKISELKDELKNAKKEYDTLNKSVRMLSLGTSTLDEILSKEKVKNDKK 174

[Close]

BLAST of HG10005950 vs. ExPASy TrEMBL
Match: A0A5D3BQY7 (Putative envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001670 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 33/57 (57.89%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 5   LIEDNNRLMSTISELKKELQEAKADRDSLSKSVRMLNSKTYDLDKILSSEKKMSDKK 62
           L ++N RLM  ISELK EL+ AK + D+L+KSVRML+  T  LD+ILS EK  +DKK
Sbjct: 118 LTKENLRLMEKISELKDELKNAKKEYDTLNKSVRMLSLGTSTLDEILSKEKVKNDKK 174

The following BLAST results are available for this feature:

BLAST of HG10005950 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK01584.1	4.6e-04	57.89	putative envelope-like protein [Cucumis melo var. makuwa]	[more]

BLAST of HG10005950 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQY7	2.2e-04	57.89	Putative envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of HG10005950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005950.1	HG10005950.1	mRNA