HG10005944 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005944
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transcription factor MYB44 isoform X1
Location	Chr07: 9338311 .. 9338490 (-)
RNA-Seq Expression	HG10005944
Synteny	HG10005944

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAAAATGCAACAAAGAAGCAATTACAATTACGACAACTCTCGTTACCAAATTCCAAACCATAACACAACAACATGGGATCACCATATTATGGGAAGTGAGGGATCATCATTGGTGAGCGAGGAAAACGGTGTCGAACCGGCGTTCATAGACTTTCTTGGAGTAGGAGGGAGATGA

mRNA sequence

ATGACCAAAATGCAACAAAGAAGCAATTACAATTACGACAACTCTCGTTACCAAATTCCAAACCATAACACAACAACATGGGATCACCATATTATGGGAAGTGAGGGATCATCATTGGTGAGCGAGGAAAACGGTGTCGAACCGGCGTTCATAGACTTTCTTGGAGTAGGAGGGAGATGA

Coding sequence (CDS)

ATGACCAAAATGCAACAAAGAAGCAATTACAATTACGACAACTCTCGTTACCAAATTCCAAACCATAACACAACAACATGGGATCACCATATTATGGGAAGTGAGGGATCATCATTGGTGAGCGAGGAAAACGGTGTCGAACCGGCGTTCATAGACTTTCTTGGAGTAGGAGGGAGATGA

Protein sequence

MTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENGVEPAFIDFLGVGGR

Homology

[Close]

BLAST of HG10005944 vs. NCBI nr
Match: XP_038890980.1 (transcription factor MYB105-like [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 5.8e-14
Identity = 47/67 (70.15%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1   MTKMQQRSNYNYD-NSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG-------VEPAFID 60
           MT+MQQRSNYNY+ NS  QI   NTTTWDHH++GSEGSS VSEENG       VE  FID
Sbjct: 200 MTEMQQRSNYNYNYNSLNQIGKKNTTTWDHHVLGSEGSSSVSEENGVGSSDGVVEATFID 259

[Close]

BLAST of HG10005944 vs. NCBI nr
Match: XP_016899494.1 (PREDICTED: transcription factor MYB44 isoform X2 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 45/68 (66.18%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFI 60
           MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFI
Sbjct: 199 MTEMQQRTTYNY-NSHCQIPK----AWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFI 258

[Close]

BLAST of HG10005944 vs. NCBI nr
Match: XP_008441713.1 (PREDICTED: transcription factor MYB44 isoform X1 [Cucumis melo] >KAA0032249.1 transcription factor MYB44 isoform X1 [Cucumis melo var. makuwa] >TYK17058.1 transcription factor MYB44 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.0e-11
Identity = 45/68 (66.18%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFI 60
           MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFI
Sbjct: 201 MTEMQQRTTYNY-NSHCQIPK----AWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFI 260

[Close]

BLAST of HG10005944 vs. NCBI nr
Match: XP_004138987.1 (transcription factor MYB117 [Cucumis sativus] >KGN61373.1 hypothetical protein Csa_006716 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-11
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG----------VEPAF 60
           MT+MQQRSNY+Y NS  QIP      WDHHI+GSEGSS VSEENG          VEP F
Sbjct: 201 MTEMQQRSNYSY-NSHCQIPK----AWDHHIIGSEGSSSVSEENGVGNISEGMVVVEPVF 260

[Close]

BLAST of HG10005944 vs. ExPASy TrEMBL
Match: A0A5A7SSP0 (Transcription factor MYB44 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00010 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.9e-12
Identity = 45/68 (66.18%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFI 60
           MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFI
Sbjct: 201 MTEMQQRTTYNY-NSHCQIPK----AWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFI 260

[Close]

BLAST of HG10005944 vs. ExPASy TrEMBL
Match: A0A1S3B420 (transcription factor MYB44 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485791 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.9e-12
Identity = 45/68 (66.18%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFI 60
           MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFI
Sbjct: 201 MTEMQQRTTYNY-NSHCQIPK----AWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFI 260

[Close]

BLAST of HG10005944 vs. ExPASy TrEMBL
Match: A0A1S4DU28 (transcription factor MYB44 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485791 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.9e-12
Identity = 45/68 (66.18%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 1   MTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG---------VEPAFI 60
           MT+MQQR+ YNY NS  QIP      WDHHI+GSEGSS VSEENG         VEPAFI
Sbjct: 199 MTEMQQRTTYNY-NSHCQIPK----AWDHHIIGSEGSSSVSEENGVGNSDGTVVVEPAFI 258

[Close]

BLAST of HG10005944 vs. ExPASy TrEMBL
Match: A0A0A0LHV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G100550 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 45/69 (65.22%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MTKMQQRSNYNYDNSRYQIPNHNTTTWDHHIMGSEGSSLVSEENG----------VEPAF 60
           MT+MQQRSNY+Y NS  QIP      WDHHI+GSEGSS VSEENG          VEP F
Sbjct: 201 MTEMQQRSNYSY-NSHCQIPK----AWDHHIIGSEGSSSVSEENGVGNISEGMVVVEPVF 260

The following BLAST results are available for this feature:

BLAST of HG10005944 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890980.1	5.8e-14	70.15	transcription factor MYB105-like [Benincasa hispida]	[more]
XP_016899494.1	2.0e-11	66.18	PREDICTED: transcription factor MYB44 isoform X2 [Cucumis melo]	[more]
XP_008441713.1	2.0e-11	66.18	PREDICTED: transcription factor MYB44 isoform X1 [Cucumis melo] >KAA0032249.1 tr...	[more]
XP_004138987.1	2.7e-11	65.22	transcription factor MYB117 [Cucumis sativus] >KGN61373.1 hypothetical protein C...	[more]

BLAST of HG10005944 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005944 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSP0	9.9e-12	66.18	Transcription factor MYB44 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B420	9.9e-12	66.18	transcription factor MYB44 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485791 PE...	[more]
A0A1S4DU28	9.9e-12	66.18	transcription factor MYB44 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485791 PE...	[more]
A0A0A0LHV6	1.3e-11	65.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G100550 PE=4 SV=1	[more]

BLAST of HG10005944 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005944.1	HG10005944.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding