HG10005937 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005937
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr07: 9119797 .. 9119970 (+)
RNA-Seq ExpressionHG10005937
SyntenyHG10005937
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAAGGTCCCATTACAATATCAAGAGCCAAGAAACTACAACAAGCTATAATCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTATGCAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

mRNA sequence

ATGCCTCAAGGTCCCATTACAATATCAAGAGCCAAGAAACTACAACAAGCTATAATCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTATGCAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

Coding sequence (CDS)

ATGCCTCAAGGTCCCATTACAATATCAAGAGCCAAGAAACTACAACAAGCTATAATCACTCATATCCAAGCTATGGTGACCTCAAGAAAGGAGATTGTAGAAGATGTTGGAGTTCTTCCATACATGCTATGCAAAGTTGAGCTTCAAGATGAAGATGCATTAAATGCATTCTAA

Protein sequence

MPQGPITISRAKKLQQAIITHIQAMVTSRKEIVEDVGVLPYMLCKVELQDEDALNAF
Homology
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BLAST of HG10005937 vs. NCBI nr
Match: XP_038900633.1 (uncharacterized protein LOC120087799 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 1.0e-12
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MPQGPITISRAKKLQQAIITHIQAMVTSRKEIVEDVGVLPYMLCKVELQDEDALNAF 58
           M QG I  SRAKKL QA+ITHIQAMVTS K+IVEDV VL YMLCKVE QDEDALNAF
Sbjct: 104 MSQGSIIRSRAKKL-QALITHIQAMVTSTKDIVEDVRVLSYMLCKVEFQDEDALNAF 159

The following BLAST results are available for this feature:
BLAST of HG10005937 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038900633.11.0e-1280.70uncharacterized protein LOC120087799 [Benincasa hispida][more]
BLAST of HG10005937 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10005937 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10005937 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005937.1HG10005937.1mRNA