HG10005935 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005935
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Chr07: 9024678 .. 9024941 (+)
RNA-Seq Expression	HG10005935
Synteny	HG10005935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTAGTATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAAGGGTGGAGGAAATGAACACGAAAAGGAATTCGCCACCACAAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTAGACGAGGATCGGATCCTATCCACAACAGGTCTTAG

mRNA sequence

ATGGTTTTTAGTATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAAGGGTGGAGGAAATGAACACGAAAAGGAATTCGCCACCACAAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTAGACGAGGATCGGATCCTATCCACAACAGGTCTTAG

Coding sequence (CDS)

ATGGTTTTTAGTATACACAGAGTACTTGTTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAACCAGATCAGGCTTGTGCTTTGAGAAGCATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAAGGGTGGAGGAAATGAACACGAAAAGGAATTCGCCACCACAAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTAGACGAGGATCGGATCCTATCCACAACAGGTCTTAG

Protein sequence

MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSRVEEMNTKRNSPPQNNKFDPNRSSKRRVRRGSDPIHNRS

Homology

[Close]

BLAST of HG10005935 vs. NCBI nr
Match: KAA0032271.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 9.0e-32
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSRVEEMNTKRNSP 60
          MVFSIHRVL+VLLMC VALLAVKP+QACALRSIDLALRPSRHILVEDSRVEE+N KRNS 
Sbjct: 1  MVFSIHRVLIVLLMC-VALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PQNNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of HG10005935 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_006322 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 3.4e-31
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSRVEEMNTKRNSP 60
          M FSIHRVL+VLLMCVVALLAVK DQACALRSIDLALRPSRHILVEDS VEE+N KRNS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 88
          P+NNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of HG10005935 vs. NCBI nr
Match: KAG7029950.1 (hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 5.0e-30
Identity = 77/87 (88.51%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSRVEEMNTKRNSP 60
          MVFSIHRVLVVLLMCVVALLAV+PDQACA+RSIDLALR SRHILVEDSRVEE N KRNS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 88
          P+N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of HG10005935 vs. NCBI nr
Match: KAG6598982.1 (hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.4e-29
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSRVEEMNTKRNSP 60
          MVFSIHRVLVVLLMCVVALLAV+PDQACALRSIDLA R SRHILVEDSRVEE N KRNS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 88
          P+N+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of HG10005935 vs. NCBI nr
Match: KAG7036811.1 (hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.9 bits (276), Expect = 5.5e-21
Identity = 68/87 (78.16%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSRVEEMNTKRNSP 60
          MVFSIHRVL+VLLMCVVALLAVKP+QAC L S+DLALRP RH+L ED R       RNS 
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-EDPR------DRNSR 60

Query: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 88
          P+ NKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PR-NKFDPNRSSKRRVRRGSDPIHNRS 79

[Close]

BLAST of HG10005935 vs. ExPASy TrEMBL
Match: A0A5A7SRV2 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00220 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.4e-32
Identity = 81/87 (93.10%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSRVEEMNTKRNSP 60
          MVFSIHRVL+VLLMC VALLAVKP+QACALRSIDLALRPSRHILVEDSRVEE+N KRNS 
Sbjct: 1  MVFSIHRVLIVLLMC-VALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PQNNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of HG10005935 vs. ExPASy TrEMBL
Match: A0A0A0LHH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 79/87 (90.80%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSRVEEMNTKRNSP 60
          M FSIHRVL+VLLMCVVALLAVK DQACALRSIDLALRPSRHILVEDS VEE+N KRNS 
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 88
          P+NNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of HG10005935 vs. ExPASy TrEMBL
Match: A5APJ5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSR--HILVEDSR-------VE 60
          MVFS  RVLV L+   + +LAV+PD+   LRSIDL LR S+  H+L   ++       VE
Sbjct: 1  MVFSAQRVLVFLI--CIGVLAVEPDKVSGLRSIDLVLRQSQEDHMLAPKNQRILKAVVVE 60

Query: 61 EMNTKRNSPPQNNKFDPNRSSKRRVRRGSDPIHNRS 88
          ++N + N+ P N KFD N+SSKRRVRRGSDPIHNRS
Sbjct: 61 DLNREENAAPVNKKFDLNQSSKRRVRRGSDPIHNRS 94

[Close]

BLAST of HG10005935 vs. ExPASy TrEMBL
Match: W9QB86 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001442 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.5e-11
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLAL---RPSRHILVEDSR------VE 60
          MVFS HRVL +LL+C + LL+V+PD+   LR+ID AL   + +  IL++  R      ++
Sbjct: 1  MVFSTHRVL-ILLIC-IGLLSVQPDKVSGLRNIDTALGEHKENNQILLQIRRFLKVVNMD 60

Query: 61 EMNTKRNSPPQNNKFDPNRSSKRRVRRGSDPIHNRS 88
           MNTK+ S  QN+KFDP+RSSKR+V RGSDPIHNRS
Sbjct: 61 GMNTKKRSSSQNDKFDPDRSSKRKVGRGSDPIHNRS 94

[Close]

BLAST of HG10005935 vs. ExPASy TrEMBL
Match: A0A067GTG0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.3e-11
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MVFSIHRVLVVLLMCVVALLAVKPDQACALRSIDLALRPSRH---------ILVEDSRVE 60
          MVF   RVL +LL+C+  LL+V+PD+   LRSIDL LR ++H          +++++ + 
Sbjct: 1  MVFFARRVL-ILLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 EMNTKRNSPPQNNKFDPNRSSKRRVRRGSDPIHNRS 88
           MN ++ S   +NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

The following BLAST results are available for this feature:

BLAST of HG10005935 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032271.1	9.0e-32	93.10	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLA...	[more]
KGN61380.1	3.4e-31	90.80	hypothetical protein Csa_006322 [Cucumis sativus]	[more]
KAG7029950.1	5.0e-30	88.51	hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598982.1	1.4e-29	88.51	hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036811.1	5.5e-21	78.16	hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of HG10005935 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SRV2	4.4e-32	93.10	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LHH0	1.7e-31	90.80	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1	[more]
A5APJ5	2.5e-11	54.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010312 PE=4 SV=1	[more]
W9QB86	2.5e-11	54.17	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_001442 PE=4 SV=1	[more]
A0A067GTG0	3.3e-11	51.04	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1	[more]

BLAST of HG10005935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..87
None	No IPR available	PANTHER	PTHR36726:SF4	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005935.1	HG10005935.1	mRNA