HG10005925 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005925
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Envelope-like protein
Location	Chr07: 8547243 .. 8547560 (+)
RNA-Seq Expression	HG10005925
Synteny	HG10005925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAAAAATGTTAGAGAACAGTGTCCCTCTCTCCGAGATTTGGTGTTTGAATTAATTGGAGGAGCTCAGTCCACCTGGCCAAGAAAAGGTCAAATGTCCACTTTGGTTATGAGTGTGAAGTATGTACTGTTGCACCGAATTGGGATTTATAACTGGTGCCCTTCTTCACACAAATCAGGATTGTTTGTTGGCCTTGCGACTCTGATATATGAGATAGAGACGCGTGCTCAATTCAACTACGGGGTCTTTTTGTTAAATCAGATCAAACGACACATCGGATCTACTGCTTTGAAACTGCCAATTTGCTTTCCATGA

mRNA sequence

ATGCCTAAAAATGTTAGAGAACAGTGTCCCTCTCTCCGAGATTTGGTGTTTGAATTAATTGGAGGAGCTCAGTCCACCTGGCCAAGAAAAGGTCAAATGTCCACTTTGGTTATGAGTGTGAAGTATGTACTGTTGCACCGAATTGGGATTTATAACTGGTGCCCTTCTTCACACAAATCAGGATTGTTTGTTGGCCTTGCGACTCTGATATATGAGATAGAGACGCGTGCTCAATTCAACTACGGGGTCTTTTTGTTAAATCAGATCAAACGACACATCGGATCTACTGCTTTGAAACTGCCAATTTGCTTTCCATGA

Coding sequence (CDS)

ATGCCTAAAAATGTTAGAGAACAGTGTCCCTCTCTCCGAGATTTGGTGTTTGAATTAATTGGAGGAGCTCAGTCCACCTGGCCAAGAAAAGGTCAAATGTCCACTTTGGTTATGAGTGTGAAGTATGTACTGTTGCACCGAATTGGGATTTATAACTGGTGCCCTTCTTCACACAAATCAGGATTGTTTGTTGGCCTTGCGACTCTGATATATGAGATAGAGACGCGTGCTCAATTCAACTACGGGGTCTTTTTGTTAAATCAGATCAAACGACACATCGGATCTACTGCTTTGAAACTGCCAATTTGCTTTCCATGA

Protein sequence

MPKNVREQCPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKSGLFVGLATLIYEIETRAQFNYGVFLLNQIKRHIGSTALKLPICFP

Homology

[Close]

BLAST of HG10005925 vs. NCBI nr
Match: XP_038889203.1 (uncharacterized protein LOC120079088 [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 1   MPKNVREQCPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKS 60
           +P+NVREQ PSLRDLVFEL GGA+STWP KGQ+ST  +SVKYVLLHRIG YNWCPS HKS
Sbjct: 134 VPENVREQHPSLRDLVFELTGGARSTWPHKGQLSTTALSVKYVLLHRIGSYNWCPSLHKS 193

Query: 61  GLFVGLATLIYEIETRAQFNYGVFLLNQIKRHIGSTALKLPICFP 106
            L + LA+L+Y+I TR+QFNY VF++NQIK  IG  ALK   CFP
Sbjct: 194 SLSIALASLMYKIRTRSQFNYSVFVINQIKCQIGFIALKFSSCFP 238

[Close]

BLAST of HG10005925 vs. NCBI nr
Match: XP_038904458.1 (uncharacterized protein LOC120090822 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.1e-27
Identity = 58/81 (71.60%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1   MPKNVREQCPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKS 60
           +P+NVR+Q PSLRDLVFELIG A+STWPR+GQ+ T  ++VKY LLHRIGIY+WCPSSHKS
Sbjct: 94  VPENVRKQHPSLRDLVFELIGEARSTWPRRGQLPTAGLNVKYTLLHRIGIYSWCPSSHKS 153

Query: 61  GLFVGLATLIYEIETRAQFNY 82
            L + LATL+Y++ TRAQFNY
Sbjct: 154 SLSIALATLMYQVGTRAQFNY 174

[Close]

BLAST of HG10005925 vs. NCBI nr
Match: XP_038887050.1 (uncharacterized protein LOC120077220 [Benincasa hispida])

HSP 1 Score: 124.8 bits (312), Expect = 4.4e-25
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MPKNVREQCPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKS 60
           +P+NV EQ   + DLVFEL    +  WP+K Q+    +SVKYVLLH+IGI NWCPSSHK 
Sbjct: 131 VPENVTEQRSFMSDLVFELTRRVKRAWPKKDQLPCSDLSVKYVLLHKIGIENWCPSSHKY 190

Query: 61  GLFVGLATLIYEIETRAQFNYGVFLLNQIKRHIGSTALKLP 102
            L   L  L+Y+I T  +FNYG+F+LNQIKRHI S A K+P
Sbjct: 191 SLSTPLENLLYQIGTMEKFNYGIFILNQIKRHIASQATKVP 231

[Close]

BLAST of HG10005925 vs. NCBI nr
Match: XP_038887175.1 (uncharacterized protein LOC120077362 [Benincasa hispida])

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-17
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 32  QMSTLVMSVKYVLLHRIGIYNWCPSSHKSGLFVGLATLIYEIETRAQFNYGVFLLNQIKR 91
           +++ L  SVKYVLLH+IGI NW PSSHK GL   LA+L+Y+I+T A+FNYGV   NQIKR
Sbjct: 125 KVNCLAFSVKYVLLHKIGIENWFPSSHKFGLSTTLASLLYQIDTGAEFNYGVLNFNQIKR 184

Query: 92  HIGSTALKLPICF 105
           HIGS A K+  CF
Sbjct: 185 HIGSQATKVLSCF 197

[Close]

BLAST of HG10005925 vs. NCBI nr
Match: TYK28209.1 (uncharacterized protein E5676_scaffold258G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 97.8 bits (242), Expect = 5.8e-17
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 9   CPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKSGLFVGLAT 68
           CP+   L   L GG  STWP  G ++   +SVKY +LH+IGI NW PSSH S +F  L T
Sbjct: 629 CPTTEGLANVLSGGTLSTWPVNGILAA-ALSVKYAILHKIGIANWFPSSHVSSIFAALGT 688

Query: 69  LIYEIETRAQFNYGVFLLNQIKRHIGSTALKLPICF 105
            +Y+I    + + G F+ NQ+ RH+GS  +K+PI F
Sbjct: 689 FLYQICNSDKVDTGAFIYNQLLRHVGSFGVKVPIAF 723

[Close]

BLAST of HG10005925 vs. ExPASy TrEMBL
Match: A0A5A7V6D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00690 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-17
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 9   CPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKSGLFVGLAT 68
           CP+   L   L GG  STWP  G ++   +SVKY +LH+IGI NW PSSH S +F  L T
Sbjct: 617 CPTTEGLANVLSGGTLSTWPVNGILAA-ALSVKYAILHKIGIANWFPSSHVSSIFAALGT 676

Query: 69  LIYEIETRAQFNYGVFLLNQIKRHIGSTALKLPICF 105
            +Y+I    + + G F+ NQ+ RH+GS  +K+PI F
Sbjct: 677 FLYQICNSDKVDTGAFIYNQLLRHVGSFGVKVPIAF 711

[Close]

BLAST of HG10005925 vs. ExPASy TrEMBL
Match: A0A5D3DXX2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00200 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.8e-17
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 0


Query: 9   CPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKSGLFVGLAT 68
           CP+   L   L GG  STWP  G ++   +SVKY +LH+IGI NW PSSH S +F  L T
Sbjct: 629 CPTTEGLANVLSGGTLSTWPVNGILAA-ALSVKYAILHKIGIANWFPSSHVSSIFAALGT 688

Query: 69  LIYEIETRAQFNYGVFLLNQIKRHIGSTALKLPICF 105
            +Y+I    + + G F+ NQ+ RH+GS  +K+PI F
Sbjct: 689 FLYQICNSDKVDTGAFIYNQLLRHVGSFGVKVPIAF 723

[Close]

BLAST of HG10005925 vs. ExPASy TrEMBL
Match: A0A5A7UAL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G001160 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.2e-17
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 9   CPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKSGLFVGLAT 68
           CP+   LV  L GG  STWP  G +  + +SVKY +LH+IGI NW PSSH S +   L T
Sbjct: 282 CPTTEVLVAVLSGGTLSTWPVNG-IPAVALSVKYAILHKIGIANWFPSSHASSVSAALGT 341

Query: 69  LIYEIETRAQFNYGVFLLNQIKRHIGSTALKLPICFP 106
            +Y+I    + + G F+ NQ+ RH+GS  +K+PI  P
Sbjct: 342 FLYQICNDDKVDTGAFIYNQLLRHVGSFGVKIPIALP 377

[Close]

BLAST of HG10005925 vs. ExPASy TrEMBL
Match: A0A5D3C774 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00750 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 8.2e-17
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 9   CPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKSGLFVGLAT 68
           CP+   LV  L GG  STWP  G +  + +SVKY +LH+IGI NW PSSH S +   L T
Sbjct: 280 CPTTEVLVAVLSGGTLSTWPVNG-IPAVALSVKYAILHKIGIANWFPSSHASSVSAALGT 339

Query: 69  LIYEIETRAQFNYGVFLLNQIKRHIGSTALKLPICFP 106
            +Y+I    + + G F+ NQ+ RH+GS  +K+PI  P
Sbjct: 340 FLYQICNDDKVDTGAFIYNQLLRHVGSFGVKIPIALP 375

[Close]

BLAST of HG10005925 vs. ExPASy TrEMBL
Match: A0A5A7SRX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5393G00110 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 9   CPSLRDLVFELIGGAQSTWPRKGQMSTLVMSVKYVLLHRIGIYNWCPSSHKSGLFVGLAT 68
           CPS   L   L GG  STWP  G +ST  +S+KY +LH+IGI NW PSSH S +   L T
Sbjct: 360 CPSTDVLATVLSGGTLSTWPING-ISTAALSIKYAILHKIGIANWFPSSHASSVSTALGT 419

Query: 69  LIYEIETRAQFNYGVFLLNQIKRHIGSTALKLPI 103
            +Y+I    + + G F+ NQ+ RH+GS  +K+PI
Sbjct: 420 FLYQICNDIKVDTGAFIYNQLLRHVGSFGVKVPI 452

The following BLAST results are available for this feature:

BLAST of HG10005925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889203.1	1.5e-36	70.48	uncharacterized protein LOC120079088 [Benincasa hispida]	[more]
XP_038904458.1	2.1e-27	71.60	uncharacterized protein LOC120090822 [Benincasa hispida]	[more]
XP_038887050.1	4.4e-25	56.44	uncharacterized protein LOC120077220 [Benincasa hispida]	[more]
XP_038887175.1	4.4e-17	63.01	uncharacterized protein LOC120077362 [Benincasa hispida]	[more]
TYK28209.1	5.8e-17	45.83	uncharacterized protein E5676_scaffold258G00200 [Cucumis melo var. makuwa]	[more]

BLAST of HG10005925 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6D8	2.8e-17	45.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DXX2	2.8e-17	45.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UAL1	8.2e-17	45.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C774	8.2e-17	45.36	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRX3	1.8e-16	46.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of HG10005925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005925.1	HG10005925.1	mRNA