HG10005920 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005920
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr07: 8429984 .. 8430265 (+)
RNA-Seq ExpressionHG10005920
SyntenyHG10005920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATTTGCTTTGGGCTTGAGACATTGTCTTCTATTAGTGTTTCAAATATTTTGGTGGAGTCTGATTGCTTGGAGGTCATCAATCTATTGAATGATGTTGTTGTCGACTTTTCTGAAGTGTCCTTTTTTATTGAGGAGATTAAGGACAAAGGTGGGGAGTTGGGAGTTGTCTTCTTTTCTCATGCTCGCCGTAATCAGAACGTGTTGGCTCACTGTGTTGTACAAAAAGCTCTGGAGGATCGAGAGTCCTCAATTCTTTCAACTCTTTATCTTGAGTAG

mRNA sequence

ATGGCAATTTGCTTTGGGCTTGAGACATTGTCTTCTATTAGTGTTTCAAATATTTTGGTGGAGTCTGATTGCTTGGAGGTCATCAATCTATTGAATGATGTTGTTGTCGACTTTTCTGAAGTGTCCTTTTTTATTGAGGAGATTAAGGACAAAGGTGGGGAGTTGGGAGTTGTCTTCTTTTCTCATGCTCGCCGTAATCAGAACGTGTTGGCTCACTGTGTTGTACAAAAAGCTCTGGAGGATCGAGAGTCCTCAATTCTTTCAACTCTTTATCTTGAGTAG

Coding sequence (CDS)

ATGGCAATTTGCTTTGGGCTTGAGACATTGTCTTCTATTAGTGTTTCAAATATTTTGGTGGAGTCTGATTGCTTGGAGGTCATCAATCTATTGAATGATGTTGTTGTCGACTTTTCTGAAGTGTCCTTTTTTATTGAGGAGATTAAGGACAAAGGTGGGGAGTTGGGAGTTGTCTTCTTTTCTCATGCTCGCCGTAATCAGAACGTGTTGGCTCACTGTGTTGTACAAAAAGCTCTGGAGGATCGAGAGTCCTCAATTCTTTCAACTCTTTATCTTGAGTAG

Protein sequence

MAICFGLETLSSISVSNILVESDCLEVINLLNDVVVDFSEVSFFIEEIKDKGGELGVVFFSHARRNQNVLAHCVVQKALEDRESSILSTLYLE
Homology
[Close]
BLAST of HG10005920 vs. NCBI nr
Match: XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 7.9e-18
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0 

Query: 1   MAICFGLETLSSISVSNILVESDCL-EVINLLNDVVVDFSEVSFFIEEIKDKGGELGVVF 60
           +AICFGLE LSSI +SNI+VESDCL EVINLLND VVD SEVSF  EE KD+GG LGV+ 
Sbjct: 125 IAICFGLEILSSIDISNIMVESDCLEEVINLLNDDVVDLSEVSFCSEEAKDRGGNLGVIS 184

Query: 61  FSHARRNQNVLAH 73
           FSH RR +NVLA+
Sbjct: 185 FSHVRRYRNVLAY 197

[Close]
BLAST of HG10005920 vs. NCBI nr
Match: XP_024195627.1 (uncharacterized protein LOC112198738 [Rosa chinensis])

HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 0 

Query: 1   MAICFGLETLSSISVSNILVESDCLEVINLLNDVVVDFSEVSFFIEEIKDKGGELGVVFF 60
           +A+ FGLE L +++V+  ++ESDCL  +  +N V  D SE+   I +IK     +G V  
Sbjct: 519 LALKFGLELLQALNVTREVIESDCLNAVQAINSVAGDLSELVALIADIKGLVTTIGEVTI 578

Query: 61  SHARRNQNVLAHCVVQKALE 81
             + R  N++AHC+   + E
Sbjct: 579 CFSPRQANMVAHCLAHHSFE 598

The following BLAST results are available for this feature:
BLAST of HG10005920 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038886170.17.9e-1873.97uncharacterized protein LOC120076417 [Benincasa hispida][more]
XP_024195627.15.0e-0435.00uncharacterized protein LOC112198738 [Rosa chinensis][more]
BLAST of HG10005920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10005920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10005920 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..87
e-value: 2.7E-5
score: 26.1
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..78
e-value: 2.5E-10
score: 40.2
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 1..73
e-value: 1.49973E-12
score: 56.5536

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005920.1HG10005920.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity