Sequences
The following sequences are available for this feature:
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATTTGCTTTGGGCTTGAGACATTGTCTTCTATTAGTGTTTCAAATATTTTGGTGGAGTCTGATTGCTTGGAGGTCATCAATCTATTGAATGATGTTGTTGTCGACTTTTCTGAAGTGTCCTTTTTTATTGAGGAGATTAAGGACAAAGGTGGGGAGTTGGGAGTTGTCTTCTTTTCTCATGCTCGCCGTAATCAGAACGTGTTGGCTCACTGTGTTGTACAAAAAGCTCTGGAGGATCGAGAGTCCTCAATTCTTTCAACTCTTTATCTTGAGTAG
ATGGCAATTTGCTTTGGGCTTGAGACATTGTCTTCTATTAGTGTTTCAAATATTTTGGTGGAGTCTGATTGCTTGGAGGTCATCAATCTATTGAATGATGTTGTTGTCGACTTTTCTGAAGTGTCCTTTTTTATTGAGGAGATTAAGGACAAAGGTGGGGAGTTGGGAGTTGTCTTCTTTTCTCATGCTCGCCGTAATCAGAACGTGTTGGCTCACTGTGTTGTACAAAAAGCTCTGGAGGATCGAGAGTCCTCAATTCTTTCAACTCTTTATCTTGAGTAG
ATGGCAATTTGCTTTGGGCTTGAGACATTGTCTTCTATTAGTGTTTCAAATATTTTGGTGGAGTCTGATTGCTTGGAGGTCATCAATCTATTGAATGATGTTGTTGTCGACTTTTCTGAAGTGTCCTTTTTTATTGAGGAGATTAAGGACAAAGGTGGGGAGTTGGGAGTTGTCTTCTTTTCTCATGCTCGCCGTAATCAGAACGTGTTGGCTCACTGTGTTGTACAAAAAGCTCTGGAGGATCGAGAGTCCTCAATTCTTTCAACTCTTTATCTTGAGTAG
MAICFGLETLSSISVSNILVESDCLEVINLLNDVVVDFSEVSFFIEEIKDKGGELGVVFFSHARRNQNVLAHCVVQKALEDRESSILSTLYLE
Homology
BLAST of HG10005920 vs. NCBI nr
Match:
XP_038886170.1 (uncharacterized protein LOC120076417 [Benincasa hispida])
HSP 1 Score: 100.5 bits (249), Expect = 7.9e-18
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0
BLAST of HG10005920 vs. NCBI nr
Match:
XP_024195627.1 (uncharacterized protein LOC112198738 [Rosa chinensis])
HSP 1 Score: 54.7 bits (130), Expect = 5.0e-04
Identity = 28/80 (35.00%), Postives = 46/80 (57.50%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_038886170.1 7.9e-18 73.97 uncharacterized protein LOC120076417 [Benincasa hispida] [more] XP_024195627.1 5.0e-04 35.00 uncharacterized protein LOC112198738 [Rosa chinensis] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
A T G G C A A T T T G C T T T G G G C T T G A G A C A T T G T C T T C T A T T A G T G T T T C A A A T A T T T T G G T G G A G T C T G A T T G C T T G G A G G T C A T C A A T C T A T T G A A T G A T G T T G T T G T C G A C T T T T C T G A A G T G T C C T T T T T T A T T G A G G A G A T T A A G G A C A A A G G T G G G G A G T T G G G A G T T G T C T T C T T T T C T C A T G C T C G C C G T A A T C A G A A C G T G T T G G C T C A C T G T G T T G T A C A A A A A G C T C T G G A G G A T C G A G A G T C C T C A A T T C T T T C A A C T C T T T A T C T T G A G T A G 20 40 60 80 100 120 140 160 180 200 220 240 260 280 Expect = 2.7E-5 / Score = 26.1 Expect = 2.5E-10 / Score = 40.2 Expect = 1.49973E-12 / Score = 56.5536 Sequence G3DSA:3.30.420.10 PF13456 cd06222
IPR Term IPR Description Source Source Term Source Description Alignment
IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 1..87 IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 2..78 IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 1..73
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
molecular_function
GO:0004523 RNA-DNA hybrid ribonuclease activity
