HG10005859 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGATTCAGAGATTAGAACTTTGCTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTCGTTGTCGCTGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAGCCGCAGGCTCTTCCGACGGCGGGCCCTCGGGTTGCGGTTCCTTTTGTCGGGTTTTACCCCTAA ATGGCGATTCAGAGATTAGAACTTTGCTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTCGTTGTCGCTGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAGCCGCAGGCTCTTCCGACGGCGGGCCCTCGGGTTGCGGTTCCTTTTGTCGGGTTTTACCCCTAA ATGGCGATTCAGAGATTAGAACTTTGCTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTCGTTGTCGCTGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAGCCGCAGGCTCTTCCGACGGCGGGCCCTCGGGTTGCGGTTCCTTTTGTCGGGTTTTACCCCTAA MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP Homology
BLAST of HG10005859 vs. NCBI nr
Match: KAA0031272.1 (hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN43958.1 hypothetical protein Csa_017301 [Cucumis sativus] >TYK06724.1 hypothetical protein E5676_scaffold13G00250 [Cucumis melo var. makuwa]) HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19 Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of HG10005859 vs. NCBI nr
Match: XP_015874275.1 (uncharacterized protein LOC107411246 [Ziziphus jujuba]) HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07 Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of HG10005859 vs. NCBI nr
Match: OAY29431.1 (hypothetical protein MANES_15G144200v8 [Manihot esculenta]) HSP 1 Score: 57.8 bits (138), Expect = 3.6e-05 Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0
BLAST of HG10005859 vs. NCBI nr
Match: XP_023879445.1 (uncharacterized protein LOC111991865 [Quercus suber]) HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04 Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 0
BLAST of HG10005859 vs. NCBI nr
Match: KAG4209325.1 (hypothetical protein ERO13_A03G190700v2 [Gossypium hirsutum] >TYH26196.1 hypothetical protein ES288_A03G231700v1 [Gossypium darwinii] >TYI37631.1 hypothetical protein ES332_A03G226400v1 [Gossypium tomentosum] >TYJ44239.1 hypothetical protein E1A91_A03G209600v1 [Gossypium mustelinum]) HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04 Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A5D3C626 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00250 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 7.2e-20 Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A0A0K3A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 7.2e-20 Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 0
BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A6P3ZHL2 (uncharacterized protein LOC107411246 OS=Ziziphus jujuba OX=326968 GN=LOC107411246 PE=4 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07 Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A2C9UG64 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G144200 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05 Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0
BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A5D2R9U9 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A03G226400v1 PE=4 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 6.5e-05 Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0
BLAST of HG10005859 vs. TAIR 10
Match: AT4G33960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 39.7 bits (91), Expect = 9.3e-04 Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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