HG10005859 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005859
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr07: 7164867 .. 7165037 (-)
RNA-Seq ExpressionHG10005859
SyntenyHG10005859
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATTCAGAGATTAGAACTTTGCTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTCGTTGTCGCTGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAGCCGCAGGCTCTTCCGACGGCGGGCCCTCGGGTTGCGGTTCCTTTTGTCGGGTTTTACCCCTAA

mRNA sequence

ATGGCGATTCAGAGATTAGAACTTTGCTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTCGTTGTCGCTGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAGCCGCAGGCTCTTCCGACGGCGGGCCCTCGGGTTGCGGTTCCTTTTGTCGGGTTTTACCCCTAA

Coding sequence (CDS)

ATGGCGATTCAGAGATTAGAACTTTGCTTGGAGCTGCTGCGAATGGCTATCAATTTCGTCGTCGTTGTCGCTGAATCCGTCGGCGACGTTATCCACCGGGAATGTCAGCCGCAGGCTCTTCCGACGGCGGGCCCTCGGGTTGCGGTTCCTTTTGTCGGGTTTTACCCCTAA

Protein sequence

MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP
Homology
BLAST of HG10005859 vs. NCBI nr
Match: KAA0031272.1 (hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN43958.1 hypothetical protein Csa_017301 [Cucumis sativus] >TYK06724.1 hypothetical protein E5676_scaffold13G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-19
Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP 57
          M IQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAG RV VPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

BLAST of HG10005859 vs. NCBI nr
Match: XP_015874275.1 (uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP 57
          M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++     +PF+GFYP
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

BLAST of HG10005859 vs. NCBI nr
Match: OAY29431.1 (hypothetical protein MANES_15G144200v8 [Manihot esculenta])

HSP 1 Score: 57.8 bits (138), Expect = 3.6e-05
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP 57
          M  QRLE+C++L+R+A+ FV +VAE++G VI ++   + +PT    V VPFVGF P
Sbjct: 1  MMFQRLEMCIQLIRLALEFVFIVAEAIGIVIEQDSSHRYIPTQTFAVPVPFVGFLP 56

BLAST of HG10005859 vs. NCBI nr
Match: XP_023879445.1 (uncharacterized protein LOC111991865 [Quercus suber])

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-04
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGF 55
          M  QRLE+C+EL+R+++ FV++VAE+VG VI +   PQ +   G   + PFVGF
Sbjct: 2  MLFQRLEMCIELIRLSLRFVIIVAEAVGVVIQQNGPPQLMTYPGYGTSTPFVGF 55

BLAST of HG10005859 vs. NCBI nr
Match: KAG4209325.1 (hypothetical protein ERO13_A03G190700v2 [Gossypium hirsutum] >TYH26196.1 hypothetical protein ES288_A03G231700v1 [Gossypium darwinii] >TYI37631.1 hypothetical protein ES332_A03G226400v1 [Gossypium tomentosum] >TYJ44239.1 hypothetical protein E1A91_A03G209600v1 [Gossypium mustelinum])

HSP 1 Score: 55.8 bits (133), Expect = 1.4e-04
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGP-RVAVPFVGFYP 57
          M +QRLE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     +VP VGF P
Sbjct: 1  MVLQRLEICVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATSVPLVGFLP 57

BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A5D3C626 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00250 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.2e-20
Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP 57
          M IQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAG RV VPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A0A0K3A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 7.2e-20
Identity = 53/56 (94.64%), Postives = 53/56 (94.64%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP 57
          M IQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAG RV VPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A6P3ZHL2 (uncharacterized protein LOC107411246 OS=Ziziphus jujuba OX=326968 GN=LOC107411246 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP 57
          M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++     +PF+GFYP
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A2C9UG64 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G144200 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRVAVPFVGFYP 57
          M  QRLE+C++L+R+A+ FV +VAE++G VI ++   + +PT    V VPFVGF P
Sbjct: 1  MMFQRLEMCIQLIRLALEFVFIVAEAIGIVIEQDSSHRYIPTQTFAVPVPFVGFLP 56

BLAST of HG10005859 vs. ExPASy TrEMBL
Match: A0A5D2R9U9 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A03G226400v1 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.5e-05
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGP-RVAVPFVGFYP 57
          M +QRLE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     +VP VGF P
Sbjct: 1  MVLQRLEICVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATSVPLVGFLP 57

BLAST of HG10005859 vs. TAIR 10
Match: AT4G33960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G15830.1); Has 32 Blast hits to 32 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 39.7 bits (91), Expect = 9.3e-04
Identity = 24/60 (40.00%), Postives = 37/60 (61.67%), Query Frame = 0

Query: 1  MAIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGPRV----AVPFVGFYP 57
          M I+R+ELC+EL+++ + FVVVVAE+V  V+ +    +A P   P V     +P+   YP
Sbjct: 1  MVIKRIELCIELMKIGMEFVVVVAEAVQIVMRQHLNHRAPPP--PPVLRQGLLPYTASYP 58

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031272.11.5e-1994.64hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN4395... [more]
XP_015874275.12.2e-0753.57uncharacterized protein LOC107411246 [Ziziphus jujuba][more]
OAY29431.13.6e-0548.21hypothetical protein MANES_15G144200v8 [Manihot esculenta][more]
XP_023879445.11.0e-0448.15uncharacterized protein LOC111991865 [Quercus suber][more]
KAG4209325.11.4e-0449.12hypothetical protein ERO13_A03G190700v2 [Gossypium hirsutum] >TYH26196.1 hypothe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C6267.2e-2094.64Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K3A17.2e-2094.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1[more]
A0A6P3ZHL21.1e-0753.57uncharacterized protein LOC107411246 OS=Ziziphus jujuba OX=326968 GN=LOC10741124... [more]
A0A2C9UG641.7e-0548.21Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G144200 PE=4 SV=... [more]
A0A5D2R9U96.5e-0549.12Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A03G226400v1 P... [more]
Match NameE-valueIdentityDescription
AT4G33960.19.3e-0440.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37705BNAA08G11710D PROTEINcoord: 1..56
NoneNo IPR availablePANTHERPTHR37705:SF1BNAA08G11710D PROTEINcoord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005859.1HG10005859.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane