HG10005824 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCACCGGGAGGAGGGGAGATGAAGTTGAATGTCGATACTCTATGCGTGTCTAATGTGGGAGTGGGGTTGGGGGCTATTATTCCTGACTCTCAAGGAAATGTGGTGAAAACTGCGAATAAATTTGAGGAGGGAGTGGTGAATGTTTTAGCTGCTGAAGCGTTAGCACTCTTGTTTAGAATTCAAATGGCCTTTGATTTGCGTCTAACTAATTTATGGGTAGAATTTGATTCTCATAAATTAGTTAGAGTCATTCAAAATTATTCTATGCAAAATTATTCAATTGGTGGAATTCTAGAAGAGATTAGAGACTGGATGGGTAAAATTAATGTTAGGGGTCTCTTTTTTATTTTGTGTGCTTGTAATGGGGTCGCTCACTCTTTAGCTAGATGGGCGTCTACTAATAGAGTCGATGGTCAACGGTCTATTGTGGTTCATAGATGGCTTGGTCATTTTGTTGAGCTTGATGCTTATTTTTGTAATCCACTAGACGGTATTTATGTTTGA ATGTCACCGGGAGGAGGGGAGATGAAGTTGAATGTCGATACTCTATGCGTGTCTAATGTGGGAGTGGGGTTGGGGGCTATTATTCCTGACTCTCAAGGAAATGTGGTGAAAACTGCGAATAAATTTGAGGAGGGAGTGGTGAATGTTTTAGCTGCTGAAGCGTTAGCACTCTTGTTTAGAATTCAAATGGCCTTTGATTTGCGTCTAACTAATTTATGGGTAGAATTTGATTCTCATAAATTAGTTAGAGTCATTCAAAATTATTCTATGCAAAATTATTCAATTGGTGGAATTCTAGAAGAGATTAGAGACTGGATGGGTAAAATTAATGTTAGGGGTCTCTTTTTTATTTTGTGTGCTTGTAATGGGGTCGCTCACTCTTTAGCTAGATGGGCGTCTACTAATAGAGTCGATGGTCAACGGTCTATTGTGGTTCATAGATGGCTTGGTCATTTTGTTGAGCTTGATGCTTATTTTTGTAATCCACTAGACGGTATTTATGTTTGA ATGTCACCGGGAGGAGGGGAGATGAAGTTGAATGTCGATACTCTATGCGTGTCTAATGTGGGAGTGGGGTTGGGGGCTATTATTCCTGACTCTCAAGGAAATGTGGTGAAAACTGCGAATAAATTTGAGGAGGGAGTGGTGAATGTTTTAGCTGCTGAAGCGTTAGCACTCTTGTTTAGAATTCAAATGGCCTTTGATTTGCGTCTAACTAATTTATGGGTAGAATTTGATTCTCATAAATTAGTTAGAGTCATTCAAAATTATTCTATGCAAAATTATTCAATTGGTGGAATTCTAGAAGAGATTAGAGACTGGATGGGTAAAATTAATGTTAGGGGTCTCTTTTTTATTTTGTGTGCTTGTAATGGGGTCGCTCACTCTTTAGCTAGATGGGCGTCTACTAATAGAGTCGATGGTCAACGGTCTATTGTGGTTCATAGATGGCTTGGTCATTTTGTTGAGCTTGATGCTTATTTTTGTAATCCACTAGACGGTATTTATGTTTGA MSPGGGEMKLNVDTLCVSNVGVGLGAIIPDSQGNVVKTANKFEEGVVNVLAAEALALLFRIQMAFDLRLTNLWVEFDSHKLVRVIQNYSMQNYSIGGILEEIRDWMGKINVRGLFFILCACNGVAHSLARWASTNRVDGQRSIVVHRWLGHFVELDAYFCNPLDGIYV Homology
BLAST of HG10005824 vs. NCBI nr
Match: XP_042974660.1 (uncharacterized protein LOC122306292 [Carya illinoinensis]) HSP 1 Score: 75.1 bits (183), Expect = 6.5e-10 Identity = 43/131 (32.82%), Postives = 71/131 (54.20%), Query Frame = 0
BLAST of HG10005824 vs. NCBI nr
Match: XP_042988698.1 (uncharacterized protein LOC122316231 [Carya illinoinensis]) HSP 1 Score: 73.9 bits (180), Expect = 1.4e-09 Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 0
BLAST of HG10005824 vs. NCBI nr
Match: XP_042979948.1 (uncharacterized protein LOC122310131 [Carya illinoinensis]) HSP 1 Score: 73.2 bits (178), Expect = 2.5e-09 Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 0
BLAST of HG10005824 vs. NCBI nr
Match: KAF5445494.1 (hypothetical protein F2P56_034541 [Juglans regia]) HSP 1 Score: 72.0 bits (175), Expect = 5.5e-09 Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 0
BLAST of HG10005824 vs. NCBI nr
Match: XP_030485460.1 (uncharacterized protein LOC115702143 [Cannabis sativa]) HSP 1 Score: 71.6 bits (174), Expect = 7.1e-09 Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 0
BLAST of HG10005824 vs. ExPASy TrEMBL
Match: A0A7J6I5R5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_013359 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09 Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 0
BLAST of HG10005824 vs. ExPASy TrEMBL
Match: A0A7J6HML3 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_005782 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09 Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 0
BLAST of HG10005824 vs. ExPASy TrEMBL
Match: A0A803QSC8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09 Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 0
BLAST of HG10005824 vs. ExPASy TrEMBL
Match: A0A7J6HCI0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_012655 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09 Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 0
BLAST of HG10005824 vs. ExPASy TrEMBL
Match: A0A7J6GCK1 (Uncharacterized protein (Fragment) OS=Cannabis sativa OX=3483 GN=G4B88_012792 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 4.5e-09 Identity = 41/124 (33.06%), Postives = 66/124 (53.23%), Query Frame = 0
BLAST of HG10005824 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 45.4 bits (106), Expect = 5.1e-05 Identity = 33/105 (31.43%), Postives = 50/105 (47.62%), Query Frame = 0
BLAST of HG10005824 vs. TAIR 10
Match: AT3G23320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 41.6 bits (96), Expect = 7.4e-04 Identity = 48/163 (29.45%), Postives = 67/163 (41.10%), Query Frame = 0
BLAST of HG10005824 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 41.2 bits (95), Expect = 9.6e-04 Identity = 36/131 (27.48%), Postives = 58/131 (44.27%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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