HG10005817 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005817
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transcription termination factor MTEF1, chloroplastic
Location	Chr07: 6355166 .. 6355813 (+)
RNA-Seq Expression	HG10005817
Synteny	HG10005817

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGGAGCTGCAACTTCATTCACCACCGTCTCTTCCTTCTCTCCCTCGAACGCTCCCACTCCCAGATCTCGCCTTCATCTTCCTCCTCCATTCATCAACTTTCGCACTCCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCGCATCATCGATTCCCGAACCAGATTCCATTCTCCCGACGCCGTCGATCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCTCCTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCGCCGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCAGTGCCCTAGGATTCTGTTATCCGACGTGGAGTTGTGTCTCCGGCCTACGTATAGATTCCTGAAGCAATTAGGGATTGAGAATCTGAAATCGCCAAGCAATTTGAATTCACACCTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATGGGATTCTTACAGGAGATCGGATTGTCGCACGAAGAGGCAGCGAAGGTTTGCGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGGAGGAGAATTTGAAGCCAAAATATTAG

mRNA sequence

ATGGCGGTTGGAGCTGCAACTTCATTCACCACCGTCTCTTCCTTCTCTCCCTCGAACGCTCCCACTCCCAGATCTCGCCTTCATCTTCCTCCTCCATTCATCAACTTTCGCACTCCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCGCATCATCGATTCCCGAACCAGATTCCATTCTCCCGACGCCGTCGATCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCTCCTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCGCCGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCAGTGCCCTAGGATTCTGTTATCCGACGTGGAGTTGTGTCTCCGGCCTACGTATAGATTCCTGAAGCAATTAGGGATTGAGAATCTGAAATCGCCAAGCAATTTGAATTCACACCTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATGGGATTCTTACAGGAGATCGGATTGTCGCACGAAGAGGCAGCGAAGGTTTGCGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGGAGGAGAATTTGAAGCCAAAATATTAG

Coding sequence (CDS)

ATGGCGGTTGGAGCTGCAACTTCATTCACCACCGTCTCTTCCTTCTCTCCCTCGAACGCTCCCACTCCCAGATCTCGCCTTCATCTTCCTCCTCCATTCATCAACTTTCGCACTCCACATCATCAAAACCTCCGTTACCTCAAATCCCTCCGCATCATCGATTCCCGAACCAGATTCCATTCTCCCGACGCCGTCGATCAAATCCTCACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCTCCTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTCAACTCTTCACTCCCAACTTCGATCCCACCGACATTGCCCCCATCTTCCACTTCCTCGCCGCCGATCTATCCGCTTCCGTCCAAGAATCGCGCGGATTAATCCTCCAGTGCCCTAGGATTCTGTTATCCGACGTGGAGTTGTGTCTCCGGCCTACGTATAGATTCCTGAAGCAATTAGGGATTGAGAATCTGAAATCGCCAAGCAATTTGAATTCACACCTGCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATGGGATTCTTACAGGAGATCGGATTGTCGCACGAAGAGGCAGCGAAGGTTTGCGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGGAGGAGAATTTGAAGCCAAAATATTAG

Protein sequence

MAVGAATSFTTVSSFSPSNAPTPRSRLHLPPPFINFRTPHHQNLRYLKSLRIIDSRTRFHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY

Homology

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BLAST of HG10005817 vs. NCBI nr
Match: XP_038887809.1 (transcription termination factor MTEF1, chloroplastic [Benincasa hispida])

HSP 1 Score: 393.3 bits (1009), Expect = 1.4e-105
Identity = 193/215 (89.77%), Postives = 203/215 (94.42%), Query Frame = 0


Query: 1   MAVGAATSFTTVSSFSPSNAPTPRSRLHLPPPFINFRTPHHQNLRYLKSLRIIDSRTRFH 60
           MAVGAA  FTTVSSFS    PT RSRLHLPPPFINFRTPH QNLRYLKSL IIDS+TRFH
Sbjct: 6   MAVGAAAPFTTVSSFSHFKTPTTRSRLHLPPPFINFRTPHQQNLRYLKSLHIIDSQTRFH 65

Query: 61  SPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSASV 120
           SPDA+DQILTTVHFLKSKGFS SDFPRLAFLCPQLFTPNFDPTDIAP+FHFLAADLSASV
Sbjct: 66  SPDAIDQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPVFHFLAADLSASV 125

Query: 121 QESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKMG 180
           QESRGLIL+CPRILLSDVELCL+PT++FLKQLGIENLKSPSNLNSHLLNTRVEKLRSK+ 
Sbjct: 126 QESRGLILRCPRILLSDVELCLKPTHKFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIR 185

Query: 181 FLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
           F+QEIG SHEEAAK+CGRMPAMFGYSVEENLKPKY
Sbjct: 186 FMQEIGFSHEEAAKICGRMPAMFGYSVEENLKPKY 220

[Close]

BLAST of HG10005817 vs. NCBI nr
Match: XP_008454873.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] >KAA0031250.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK06701.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 8.1e-90
Identity = 174/221 (78.73%), Postives = 191/221 (86.43%), Query Frame = 0


Query: 1   MAVGA---ATSFTTVSSFSPSNAPTPRSRL---HLPPPFINFRTPHHQNLRYLKSLRIID 60
           MAVGA   + SF  VSSFS    PTP +R    HL PP INFRT H QNLRYLKSL IID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRTRFHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAA 120
            +TRF SPDAVDQILTTVHFLKSKGFS SDFPRLAF CP LFT NFD TDIAP+FHFLAA
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLIL+CP+IL SDVELCL+PT+RFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
           LR+K+ FLQEIG S+EEA+KVCGRMPA+FGYSV+ENL+PKY
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKY 221

[Close]

BLAST of HG10005817 vs. NCBI nr
Match: XP_011658929.1 (transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN43986.1 hypothetical protein Csa_017691 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 3.1e-89
Identity = 172/221 (77.83%), Postives = 188/221 (85.07%), Query Frame = 0


Query: 1   MAVG---AATSFTTVSSFSPSNAPTPRSRL---HLPPPFINFRTPHHQNLRYLKSLRIID 60
           MAVG    + SF  + SFS    PTP +R    HL PP INFRT HHQN+RYLKSL +ID
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRTRFHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAA 120
            +TRFHSPDAV QILTTVHFLKSKGFS SDFPRLAFLCP LFT NFD TDIAP+F FLA 
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLIL+CP+IL SDVELCL+PT+RFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
           LRSK+ F QEIG SHEEA+KVCGRMPAMFGYSV+ENLKPKY
Sbjct: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKY 221

[Close]

BLAST of HG10005817 vs. NCBI nr
Match: KAG6588628.1 (Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 328.9 bits (842), Expect = 3.2e-86
Identity = 165/217 (76.04%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 1   MAVGA-ATSFTTVSSFSPSNAPTPRSRLHLPPPFINFRTPHHQNLRYLKSLRIIDSR-TR 60
           MA GA +  FTT+SS S SN PT R     PPPF+NFRT H+ NLRYLKSL ++DSR T+
Sbjct: 1   MAAGALSRPFTTISSLSHSNTPTSRPPPPPPPPFLNFRTAHYHNLRYLKSLHLLDSRSTK 60

Query: 61  FHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSA 120
           F SPDAV  ILTTVHFLKSKGFS SDFP LAFLCPQLF+P+F+PTDIAP+F FLAADLSA
Sbjct: 61  FRSPDAVHSILTTVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSA 120

Query: 121 SVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSK 180
           S+QESRG+IL+CPR+L SDVELCLRPT RFLKQ+GIENL +PSNL SHLLNTRVEKLR K
Sbjct: 121 SIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGK 180

Query: 181 MGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
             FLQE+G SHEEAAKVC RMPA+FGYSVEENL+PKY
Sbjct: 181 FRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKY 217

[Close]

BLAST of HG10005817 vs. NCBI nr
Match: KAG7022425.1 (Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326.6 bits (836), Expect = 1.6e-85
Identity = 165/217 (76.04%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 1   MAVGA-ATSFTTVSSFSPSNAPTPRSRLHLPPPFINFRTPHHQNLRYLKSLRIIDSR-TR 60
           MAVGA +  FTT+SS S SN PT R     PPPF+NFRT H+ NLRYLKSL ++DSR T+
Sbjct: 1   MAVGALSRPFTTISSLSHSNTPTSRP----PPPFLNFRTAHYHNLRYLKSLHLLDSRSTK 60

Query: 61  FHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSA 120
           F SPDAV  IL TVHFLKSKGFS SDFP LAFLCPQLF+P+F+PTDIAP+F FLAADLSA
Sbjct: 61  FRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLAADLSA 120

Query: 121 SVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSK 180
           S+QESRG+IL+CPR+L SDVELCLRPT RFLKQ+GIENL +PSNL SHLLNTRVEKLR K
Sbjct: 121 SIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGK 180

Query: 181 MGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
             FLQE+G SHEEAAKVC RMPA+FGYSVEENL+PKY
Sbjct: 181 FRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKY 213

[Close]

BLAST of HG10005817 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 4.2e-17
Identity = 61/180 (33.89%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 42  QNLRYLKSLRIIDSRTRFHSPD----AVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFT 101
           + L YL+ L +   +    +P      +  +++    L S G S     R+  + P L T
Sbjct: 35  EKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLT 94

Query: 102 PNFDP-TDIAPIFHFLAADLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIEN 161
              DP ++I P+  FL+ ++S S Q+    I +CPR+L+S V+  LRP   FLK LG   
Sbjct: 95  S--DPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 154

Query: 162 LKSPSNLNSHLLNTRVEK-LRSKMGFLQE-IGLSHEEAAKVCGRMPAMFGYSVEENLKPK 215
             + ++ N+ LL + VE+ L  K+ +L+E +G + EE AK+  R PA+  YSV+ NL PK
Sbjct: 155 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 212

[Close]

BLAST of HG10005817 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.2e-05
Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 105 IAPIFHFLAADLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIEN---LKSPS 164
           I P+  FL  DL     +   ++ + P+I    +   L+PT  FL+ LGI+     K  S
Sbjct: 232 IKPVVEFL-LDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIIS 291

Query: 165 NLNSHLLNTRVEKLRSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKP 214
              + L  +R +KL S + FL + GL+ E+  ++  R P +  YSVE+ L+P
Sbjct: 292 RFPAILTYSR-QKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRP 341

[Close]

BLAST of HG10005817 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.2e-05
Identity = 35/148 (23.65%), Postives = 69/148 (46.62%), Query Frame = 0


Query: 72  VHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSASVQESRGLILQCP 131
           + FL   G  +S   ++    P LF+ + +   + P   +L  ++     +   ++   P
Sbjct: 259 ISFLMGLGIPNSKIGQIVAATPSLFSYSVE-NSLRPTIRYLIEEVGIKETDVGKVVQLSP 318

Query: 132 RILLSDVELCLRPTYRFL-KQLGIENLKSPSNLNSH--LLNTRVEK-LRSKMGFLQEIGL 191
           +IL+  +++     Y FL K+LG         +  H  LL+  ++     ++ FL+ IG+
Sbjct: 319 QILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGM 378

Query: 192 SHEEAAKVCGRMPAMFGYSVEENLKPKY 216
            + +  KV   +  +   S+E+NLKPKY
Sbjct: 379 CNSDILKVLTSLTQVLSLSLEDNLKPKY 405

[Close]

BLAST of HG10005817 vs. ExPASy TrEMBL
Match: A0A5D3C479 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00020 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.9e-90
Identity = 174/221 (78.73%), Postives = 191/221 (86.43%), Query Frame = 0


Query: 1   MAVGA---ATSFTTVSSFSPSNAPTPRSRL---HLPPPFINFRTPHHQNLRYLKSLRIID 60
           MAVGA   + SF  VSSFS    PTP +R    HL PP INFRT H QNLRYLKSL IID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRTRFHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAA 120
            +TRF SPDAVDQILTTVHFLKSKGFS SDFPRLAF CP LFT NFD TDIAP+FHFLAA
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLIL+CP+IL SDVELCL+PT+RFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
           LR+K+ FLQEIG S+EEA+KVCGRMPA+FGYSV+ENL+PKY
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKY 221

[Close]

BLAST of HG10005817 vs. ExPASy TrEMBL
Match: A0A1S3BZK0 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495186 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.9e-90
Identity = 174/221 (78.73%), Postives = 191/221 (86.43%), Query Frame = 0


Query: 1   MAVGA---ATSFTTVSSFSPSNAPTPRSRL---HLPPPFINFRTPHHQNLRYLKSLRIID 60
           MAVGA   + SF  VSSFS    PTP +R    HL PP INFRT H QNLRYLKSL IID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  SRTRFHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAA 120
            +TRF SPDAVDQILTTVHFLKSKGFS SDFPRLAF CP LFT NFD TDIAP+FHFLAA
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLIL+CP+IL SDVELCL+PT+RFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
           LR+K+ FLQEIG S+EEA+KVCGRMPA+FGYSV+ENL+PKY
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKY 221

[Close]

BLAST of HG10005817 vs. ExPASy TrEMBL
Match: A0A0A0K870 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.5e-89
Identity = 172/221 (77.83%), Postives = 188/221 (85.07%), Query Frame = 0


Query: 1   MAVG---AATSFTTVSSFSPSNAPTPRSRL---HLPPPFINFRTPHHQNLRYLKSLRIID 60
           MAVG    + SF  + SFS    PTP +R    HL PP INFRT HHQN+RYLKSL +ID
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  SRTRFHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAA 120
            +TRFHSPDAV QILTTVHFLKSKGFS SDFPRLAFLCP LFT NFD TDIAP+F FLA 
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLIL+CP+IL SDVELCL+PT+RFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
           LRSK+ F QEIG SHEEA+KVCGRMPAMFGYSV+ENLKPKY
Sbjct: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKY 221

[Close]

BLAST of HG10005817 vs. ExPASy TrEMBL
Match: A0A6J1EZY9 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437777 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.3e-85
Identity = 165/217 (76.04%), Postives = 184/217 (84.79%), Query Frame = 0


Query: 1   MAVGA-ATSFTTVSSFSPSNAPTPRSRLHLPPPFINFRTPHHQNLRYLKSLRIIDSR-TR 60
           MAVGA +  FTT+SS S SN PT R     PPPF+NFRT H+ NLRYLKSL ++DSR T+
Sbjct: 1   MAVGALSRPFTTISSLSHSNTPTSRP----PPPFLNFRTAHYHNLRYLKSLHLLDSRSTK 60

Query: 61  FHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSA 120
           F SPDAV  IL TVHFLKSKGFS SDFP LA LCPQLF+P+FDPTDIAP+F FLAADLSA
Sbjct: 61  FRSPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLAADLSA 120

Query: 121 SVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSK 180
           S+QESRG+IL+CPR+L SDVELCLRPT RFLKQ+GIENL +PSNL SHLLNTRVEKLR K
Sbjct: 121 SIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVEKLRGK 180

Query: 181 MGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
             FLQE+G SHEEAAKVC RMPA+FGYSVEENL+PKY
Sbjct: 181 FRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKY 213

[Close]

BLAST of HG10005817 vs. ExPASy TrEMBL
Match: A0A6J1JEA2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486102 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 2.2e-85
Identity = 165/220 (75.00%), Postives = 186/220 (84.55%), Query Frame = 0


Query: 1   MAVGAAT-SFTTVSSFSPSNAPT---PRSRLHLPPPFINFRTPHHQNLRYLKSLRIIDSR 60
           MAVGA +  FTT+SS S SN+PT   P S    PPPF+NFRT H  NLRYLKSLR++DS 
Sbjct: 1   MAVGALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLDSH 60

Query: 61  -TRFHSPDAVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAAD 120
            T+F SPDAV  IL TVHFLKSKGFS SDFP LAFLCPQLF+P+FDPTDIAP+F FLAAD
Sbjct: 61  STKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLAAD 120

Query: 121 LSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEKL 180
           LSAS+QESRG+IL+CP++L SDVELCLRPT RFLKQ+G+ENL +PSNL SHLLNTRVEKL
Sbjct: 121 LSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVEKL 180

Query: 181 RSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKPKY 216
           R K  FLQE+G SHEEAAKVC RMPA+FGYSVEENL+PKY
Sbjct: 181 RGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKY 220

[Close]

BLAST of HG10005817 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 228.8 bits (582), Expect = 4.2e-60
Identity = 115/205 (56.10%), Postives = 148/205 (72.20%), Query Frame = 0


Query: 12  VSSFSPSNAPTPRSRLHLPPPFINFRTPHHQNLRYLKSLRIIDSRTRFHSP-DAVDQILT 71
           +SSF  S+ P+P S     P ++ F+T H +NLR+L SL I+    R   P + +  IL+
Sbjct: 13  LSSF--SSPPSPSSS---KPLYLKFQTSHRENLRHLSSLGIVPQNPRLAPPANDLSVILS 72

Query: 72  TVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSASVQESRGLILQC 131
            V+ LKSKG S  DFPRL FLCPQLF+P FD + + P+F FL  +L AS +ESRGLI+ C
Sbjct: 73  AVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNC 132

Query: 132 PRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKMGFLQEIGLSHE 191
           P IL SDVE CLRPT  +LK+LG+ NL   S  N+H+LNTRVEKLR+KM FL+ IG  HE
Sbjct: 133 PNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFLKSIGFEHE 192

Query: 192 EAAKVCGRMPAMFGYSVEENLKPKY 216
           EAA+VCGR+PA+FGYSVE+NL+PK+
Sbjct: 193 EAARVCGRIPAIFGYSVEDNLRPKF 212

[Close]

BLAST of HG10005817 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 108.2 bits (269), Expect = 8.2e-24
Identity = 59/151 (39.07%), Postives = 95/151 (62.91%), Query Frame = 0


Query: 65  VDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSASVQESR 124
           +D I + +HFL+SKG   +D PR+  +CP++ T +   T++ P+F FL+ DL       R
Sbjct: 84  LDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDV-RTELYPVFMFLSNDLHVPENAFR 143

Query: 125 GLILQCPRILLSDVELCLRPTYRFLKQLGIENLKSPSNLNSHLLNTRVE-KLRSKMGFLQ 184
            +I +CPR+L+S VE  L+P   +L++LG+++L++ +  +  LL + VE  L  K+ FL+
Sbjct: 144 RVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRFLE 203

Query: 185 EIGLSHEEAAKVCGRMPAMFGYSVEENLKPK 215
            IG S  EA  +  R PA+F +S+E N KPK
Sbjct: 204 SIGFSRPEAIGMILRCPALFTFSIENNFKPK 233

[Close]

BLAST of HG10005817 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-18
Identity = 61/180 (33.89%), Postives = 97/180 (53.89%), Query Frame = 0


Query: 42  QNLRYLKSLRIIDSRTRFHSPD----AVDQILTTVHFLKSKGFSSSDFPRLAFLCPQLFT 101
           + L YL+ L +   +    +P      +  +++    L S G S     R+  + P L T
Sbjct: 34  EKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLT 93

Query: 102 PNFDP-TDIAPIFHFLAADLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIEN 161
              DP ++I P+  FL+ ++S S Q+    I +CPR+L+S V+  LRP   FLK LG   
Sbjct: 94  S--DPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 153

Query: 162 LKSPSNLNSHLLNTRVEK-LRSKMGFLQE-IGLSHEEAAKVCGRMPAMFGYSVEENLKPK 215
             + ++ N+ LL + VE+ L  K+ +L+E +G + EE AK+  R PA+  YSV+ NL PK
Sbjct: 154 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 211

[Close]

BLAST of HG10005817 vs. TAIR 10
Match: AT4G14605.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 105 IAPIFHFLAADLSASVQESRGLILQCPRILLSDVELCLRPTYRFLKQLGIEN---LKSPS 164
           I P+  FL  DL     +   ++ + P+I    +   L+PT  FL+ LGI+     K  S
Sbjct: 232 IKPVVEFL-LDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIIS 291

Query: 165 NLNSHLLNTRVEKLRSKMGFLQEIGLSHEEAAKVCGRMPAMFGYSVEENLKP 214
              + L  +R +KL S + FL + GL+ E+  ++  R P +  YSVE+ L+P
Sbjct: 292 RFPAILTYSR-QKLTSTVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRP 341

[Close]

BLAST of HG10005817 vs. TAIR 10
Match: AT5G55580.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 35/148 (23.65%), Postives = 69/148 (46.62%), Query Frame = 0


Query: 72  VHFLKSKGFSSSDFPRLAFLCPQLFTPNFDPTDIAPIFHFLAADLSASVQESRGLILQCP 131
           + FL   G  +S   ++    P LF+ + +   + P   +L  ++     +   ++   P
Sbjct: 259 ISFLMGLGIPNSKIGQIVAATPSLFSYSVE-NSLRPTIRYLIEEVGIKETDVGKVVQLSP 318

Query: 132 RILLSDVELCLRPTYRFL-KQLGIENLKSPSNLNSH--LLNTRVEK-LRSKMGFLQEIGL 191
           +IL+  +++     Y FL K+LG         +  H  LL+  ++     ++ FL+ IG+
Sbjct: 319 QILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGM 378

Query: 192 SHEEAAKVCGRMPAMFGYSVEENLKPKY 216
            + +  KV   +  +   S+E+NLKPKY
Sbjct: 379 CNSDILKVLTSLTQVLSLSLEDNLKPKY 405

The following BLAST results are available for this feature:

BLAST of HG10005817 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887809.1	1.4e-105	89.77	transcription termination factor MTEF1, chloroplastic [Benincasa hispida]	[more]
XP_008454873.1	8.1e-90	78.73	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] ...	[more]
XP_011658929.1	3.1e-89	77.83	transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN4398...	[more]
KAG6588628.1	3.2e-86	76.04	Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyro...	[more]
KAG7022425.1	1.6e-85	76.04	Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyro...	[more]

BLAST of HG10005817 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	4.2e-17	33.89	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
F4JVI3	2.2e-05	32.14	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9FM80	2.2e-05	23.65	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of HG10005817 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C479	3.9e-90	78.73	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BZK0	3.9e-90	78.73	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0K870	1.5e-89	77.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=3 SV=1	[more]
A0A6J1EZY9	1.3e-85	76.04	transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3...	[more]
A0A6J1JEA2	2.2e-85	75.00	transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=366...	[more]

BLAST of HG10005817 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18870.1	4.2e-60	56.10	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	8.2e-24	39.07	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	3.0e-18	33.89	Mitochondrial transcription termination factor family protein	[more]
AT4G14605.1	1.6e-06	32.14	Mitochondrial transcription termination factor family protein	[more]
AT5G55580.1	1.6e-06	23.65	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 50..81 e-value: 9.6 score: 15.2 coord: 160..188 e-value: 280.0 score: 8.2 coord: 124..155 e-value: 0.0025 score: 27.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 117..215 e-value: 4.8E-9 score: 35.6
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 26..215
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 33..158 e-value: 4.1E-13 score: 51.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR13068:SF139	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	coord: 26..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005817.1	HG10005817.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003690	double-stranded DNA binding