
HG10005546 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGACTTCCATTCCAGGGCGGAGCTTTCTACCGACGCGGCCTCTCAATGACGCACTCCCTGTCTCCCAGCCGGACTCCGCTCAAACCCTACGCCGAAGGCTCTCTTCCATTTCCTTCAAGATCCAGCCGATTTCTTCGCCTGTTACTTCCTGGCCGTTTCGAAGATCCAAATCCGTGTCGTCAATGCGCGATTTCACCGGAAGTTCTCTCCGTAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCTCGCAAAGCTGCCTTCGCTAGAGATCTGGAGATGAACGATGAAGAAACTAAAGCTCTTGGATCTAATTGCAGAGGTAGTTTCAAGCATCTTTTCTATAAGGTTAGGTCTGAATTCCGTAAACTGATTCGCTCTGATCGTGTCGGTCTTCCTCAAACTTTCAAATACGATTCGGTTAATTACTCGAAGAATTTCGATGATGGAGTAAAATCTTAG ATGACTTCCATTCCAGGGCGGAGCTTTCTACCGACGCGGCCTCTCAATGACGCACTCCCTGTCTCCCAGCCGGACTCCGCTCAAACCCTACGCCGAAGGCTCTCTTCCATTTCCTTCAAGATCCAGCCGATTTCTTCGCCTGTTACTTCCTGGCCGTTTCGAAGATCCAAATCCGTGTCGTCAATGCGCGATTTCACCGGAAGTTCTCTCCGTAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCTCGCAAAGCTGCCTTCGCTAGAGATCTGGAGATGAACGATGAAGAAACTAAAGCTCTTGGATCTAATTGCAGAGGTAGTTTCAAGCATCTTTTCTATAAGGTTAGGTCTGAATTCCGTAAACTGATTCGCTCTGATCGTGTCGGTCTTCCTCAAACTTTCAAATACGATTCGGTTAATTACTCGAAGAATTTCGATGATGGAGTAAAATCTTAG ATGACTTCCATTCCAGGGCGGAGCTTTCTACCGACGCGGCCTCTCAATGACGCACTCCCTGTCTCCCAGCCGGACTCCGCTCAAACCCTACGCCGAAGGCTCTCTTCCATTTCCTTCAAGATCCAGCCGATTTCTTCGCCTGTTACTTCCTGGCCGTTTCGAAGATCCAAATCCGTGTCGTCAATGCGCGATTTCACCGGAAGTTCTCTCCGTAAGTGGTGGGATTGGGGATGGTCCTGGATCCTCTCTCGCAAAGCTGCCTTCGCTAGAGATCTGGAGATGAACGATGAAGAAACTAAAGCTCTTGGATCTAATTGCAGAGGTAGTTTCAAGCATCTTTTCTATAAGGTTAGGTCTGAATTCCGTAAACTGATTCGCTCTGATCGTGTCGGTCTTCCTCAAACTTTCAAATACGATTCGGTTAATTACTCGAAGAATTTCGATGATGGAGTAAAATCTTAG MTSIPGRSFLPTRPLNDALPVSQPDSAQTLRRRLSSISFKIQPISSPVTSWPFRRSKSVSSMRDFTGSSLRKWWDWGWSWILSRKAAFARDLEMNDEETKALGSNCRGSFKHLFYKVRSEFRKLIRSDRVGLPQTFKYDSVNYSKNFDDGVKS Homology
BLAST of HG10005546 vs. NCBI nr
Match: XP_038888269.1 (uncharacterized protein LOC120078122 [Benincasa hispida]) HSP 1 Score: 303.1 bits (775), Expect = 1.3e-78 Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 0
BLAST of HG10005546 vs. NCBI nr
Match: KAG7022775.1 (hypothetical protein SDJN02_16511, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 294.3 bits (752), Expect = 6.2e-76 Identity = 143/153 (93.46%), Postives = 146/153 (95.42%), Query Frame = 0
BLAST of HG10005546 vs. NCBI nr
Match: XP_022928235.1 (uncharacterized protein LOC111435129 [Cucurbita moschata]) HSP 1 Score: 291.2 bits (744), Expect = 5.2e-75 Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 0
BLAST of HG10005546 vs. NCBI nr
Match: XP_022135907.1 (uncharacterized protein LOC111007745 [Momordica charantia]) HSP 1 Score: 288.1 bits (736), Expect = 4.4e-74 Identity = 136/153 (88.89%), Postives = 148/153 (96.73%), Query Frame = 0
BLAST of HG10005546 vs. NCBI nr
Match: KAA0059605.1 (hypothetical protein E6C27_scaffold54G00270 [Cucumis melo var. makuwa] >TYK08138.1 hypothetical protein E5676_scaffold886G00160 [Cucumis melo var. makuwa]) HSP 1 Score: 267.3 bits (682), Expect = 8.1e-68 Identity = 141/163 (86.50%), Postives = 146/163 (89.57%), Query Frame = 0
BLAST of HG10005546 vs. ExPASy TrEMBL
Match: A0A6J1ER56 (uncharacterized protein LOC111435129 OS=Cucurbita moschata OX=3662 GN=LOC111435129 PE=4 SV=1) HSP 1 Score: 291.2 bits (744), Expect = 2.5e-75 Identity = 140/153 (91.50%), Postives = 146/153 (95.42%), Query Frame = 0
BLAST of HG10005546 vs. ExPASy TrEMBL
Match: A0A6J1C433 (uncharacterized protein LOC111007745 OS=Momordica charantia OX=3673 GN=LOC111007745 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 2.1e-74 Identity = 136/153 (88.89%), Postives = 148/153 (96.73%), Query Frame = 0
BLAST of HG10005546 vs. ExPASy TrEMBL
Match: A0A5A7V189 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00160 PE=4 SV=1) HSP 1 Score: 267.3 bits (682), Expect = 3.9e-68 Identity = 141/163 (86.50%), Postives = 146/163 (89.57%), Query Frame = 0
BLAST of HG10005546 vs. ExPASy TrEMBL
Match: A0A0A0K1L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027010 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 6.2e-66 Identity = 137/163 (84.05%), Postives = 142/163 (87.12%), Query Frame = 0
BLAST of HG10005546 vs. ExPASy TrEMBL
Match: A0A2I4FBL9 (uncharacterized protein LOC108997284 OS=Juglans regia OX=51240 GN=LOC108997284 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 5.5e-54 Identity = 103/146 (70.55%), Postives = 123/146 (84.25%), Query Frame = 0
BLAST of HG10005546 vs. TAIR 10
Match: AT4G35320.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G17300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 114.8 bits (286), Expect = 6.2e-26 Identity = 62/130 (47.69%), Postives = 87/130 (66.92%), Query Frame = 0
BLAST of HG10005546 vs. TAIR 10
Match: AT2G17300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35320.1); Has 42 Blast hits to 42 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 101.3 bits (251), Expect = 7.1e-22 Identity = 58/125 (46.40%), Postives = 78/125 (62.40%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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