HG10005526 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005526
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	AP complex subunit sigma
Location	Chr07: 3342428 .. 3346560 (-)
RNA-Seq Expression	HG10005526
Synteny	HG10005526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTACAGAAACCAACAACAAAGAGAAGAAAAAGAAGAAGCAGCTGCTGGTCGTTGAGTTCTTTTTTGGCAAAATGATAGGCTTGGCCTTATGTAGAGGTTCAATGTGCATAGCCACCATTGTCTTCTTAACTTGTGTATGGATCCCTCTGTATCAACTGAAGGCAGCCATCGCGAGCATGTTCGACATTCTGTCGGGCAGGACGTGTCAGATGCTCGCAACAGCGTCGCCACTGTGTGAGGTAAAACTTATGGTTTGTAGGTTCAAAGAGCTGCAGCGTGTGGCCGGATCGGAGGAGGAGATTTGCTCCGTTTGCTTGGCGGAGTTCACCGGAGAAGATTTGGTGAGCCAATTGCATAGATGTAGCCATGTTTTCCATCTAGAATGTATTGAGAATTGGCTACAAAGAAACCACTTTACTTGCCCTCTCTGCAGATCCTTCCTCTTGCAAGCATTGTAAATCCTTTCGGAATCGTAATTTCACTCCGTCGAACTCGTATGACTTAACTTTGTAATGTTTTTGACATTCATGTCGTTGATTATATGGATGATAGATTATTAAATGTCTAATTGAATCGTTGTCTCAAAGTAATAATGTACAAGTTGTTTTTATCAATTTCACTATAGTTCAGTAGATAAAATATTAATTATTATTTTAAAATGTAAAAATTGTCATTTTTCAAAATGGGTGGTTTTGTCTTGTTAGCCATTGTGTTTATTTATTTATTTTCTTTTCAAAAGCTTTTTTTTTTCATTTGCCTTTTTTATAGTTAAAATGGAGATTTCATATATTAAAATGGGTTACCCTTTTAAAGTTTTTAATTTGCTAAGACATCTTTTATTGCAACCTTTTAAAAAAATAATCCAATAAAACAAATAAAGAATTAAGGACTATTTGAGTGGGCTATAGAATTGTTTAAAAGTGTTTTTAGAACAAAAATTTAGTCCTAATCCTAACATGTTTGCCTTAATAGTTTATTTTATGAATTGACCCTCTTATATCATCATTAAAATAATTATTTTGAACTATAATATTATCTAGAGTGATTTATTCTTAGAAATTGTTTTGAGATTCTTTTATATATATATAAAATCAATTTAGGAGTATACTCCTAAACTTTGAGAGTTGTATCAATTAAAATTTGAACTAATAATTGTAGCAATTTAAATTCAGAAACTTTCGTAAATATATCAATTTTCACCTTCTTTTAAATATTGTTAGAAAAATATCGTGTGAGACTTATAAATGTTTCAATTAAACTCCAAATTGTCATAAGTGAATCAATACTTCAAATCTCTTAATCGTTAACACAGACATCTATATATCAGTTGAGTTATGCTCACTTTCCCTTTATTATAAACATAGTTTTATTAGTCAAAATCTTTGTTTAACATTCTAAAAATGGGGTTGAAATCTTGACATCTTTATTTGAATTTAATATAATAATATAAATATTAATTAAGTTTAGACGGATGCTAATGGCCGGTTTGGAAAAATACTTTATTTTTTCCCCTTAATAATTTAATCCCACGCGCTCACGTACGTTGAGAAAAAGATCAACGTTTTTAAAACATAAAACAGGTCAACGATTAGAAAATTTCAATCGTCAACGATTGATTCCCCGGGAAAAAAATAATTAGATCTGAAAAGCTTTGAGATTGGGCTTGTAAATCTTTTGTACAAAAAGCCCAAAAGCCCATTAGTAGGCCCAATCGTACTAAATGGGCCTAACTGAACCCGGCCCATTTTCGAGCCCGAAGCCTTTGGCGGGTAGGAATTCTGAACAAAATAAATTTACGGCAGAACGACGGAGGAGAAGAAACCGTACTCTGATCGGAGAGAACGAATTTTTGTTGAGGATTTTTGCTTTGAGAGTTTTTTACTCTTGAAAGTTCACAGCAAAATGGTAAGTGATTTCATTGCTTTGATTCATTTCTTGATTTTGATTGTTTCAATGTGTTTTTGTCTTCCTCGTCTTGGATCTGATTTGCTCTTTCTTTGTAGGATGGTTAAATTGGTTCATCTTTTGCTTCTGAATTGTTGTTTCGTTCTTAAGTTGATTTGGAGTGATTTCGTTGTTGTAAAGATTCAGATCTTTGCTTAGCTGACAATCCGAATTGACCAACTTTCGTTTCTATTTGTTGTTTGATTTGTCGTGCTCGTTCGTTTATGTGGCTGCATAACATCTGGAATTTCGAGAATAGTTTTTTAATCTTGGGGGTTTGGATTTAGTCTTCCTAGGTGGTTTAGGATTGTAATCATGGTCCGTCCTAACTCCCTCATTTGGCTGTGCCTCCGTTGGGCAGAGCTATTTCTTCTCTGTTGAGCTAATAATGTTAGATGCAAACAAAGTCCCACCTTGGTTAGGGAAGGAAGTGATCATAGTTATATAAGTGAGGACAATTATCTCTATTGGTATAAGCCTTTTAGAGTGATTCCAAAGACAAAGTCATAAGGGTTTATGTCCAAAGTGGACATAAGGATTCATGCCTAAAGTAGACAATATCATACCATTATTGAGATGTGTGAAGGTTTCGTTGTCCTTGTCATTGTCTAGACTGGAGGAGTGACGATTCTTGTTTCATTTCTTTTGTTCTTAAGCTTGTTAGTGTGTTTCGGCAATGAGTTCTTGAATCTTATTCTTGCTCTCTTCTCAAGGACTTTTGTAAATTACCCATAAGTTCTTACTGTTGTGGATTGGAGCCCCTTTTTGTAGGGCTTAGTTGTTTAGCATCTTTGGTCTGGGGTGTTTTTTTGTATGCTCTTTAGCTTTTCCTGTTGCATTTTTTCATTTTTTTTCAATGAAAGCTTGGTTTCTCATAAAACAATCGTTCTCTTCTCTTCTTGTGCAATTTAAGTTCATTGTTTATATCTTCAACTTTTTGATTCCCCACAAAAGTAAAGATGGCCTAATTTATATCTGGCATGGTGTTCTAACTGATGTTGTTGGTGTAAATTTTCAGATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGATTGACAAAATGGTACTCTCCTCATTCTCAGAAGGAGAGATCTAAGGTAGGTCAGCTATTTGCCTCATTCTGTAATTTAATGCTAATAGCTTCATTTAATTTCCAAGCAATGAGAATCTTTGCAAAAGCTTGTTGGCTTTCCACACATCTACAAAGTTTATTTGCTTTAATAAGACTTAGTTCCCCTTGGATCTATTGTTGGACTTACCACATTATGGCATGTGCTTGTGTCTACTCATGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGGTACTTCATGGTTTATTAATGTGTTCTGCAACCCAAATTTTTTATTTGGTCCACGTTGCCCGTTCTTAATGTGATGAATGATTCTACTGGACTTGCAATGCAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTTGGCAGTGTAAGCAATTCAATTTTAGTCCATAAGTTTGAGACTATTCTTCTTGCGCCCTCTCTAGTTGACTATCTAAATTGACATTTATTTTCTTCATTATTATGGTCTTTCATTTATGTATGTAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTATTTACTTGCTTATATTAAATGTGCACCTTCTCTTTAATATGCATTTCATTGCCTCTGAATTACTTGCCCCTAGCTTCTCACCAGTGAACTTTTCTTTGGTGGATGCTCACATCCTTTACATGAAACTTTGAATGCGTTTTTTATTTATTGTTATTATTTTTAAACATTAAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCTAGATTGATAGCCGCACAGGTACTCTCTCCTTTATCTTTGCAGTACCTTCATTATGATTTCAATTTAGCTGATATGGTAATTGATATTCCATTGTAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCAAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG

mRNA sequence

ATGGTTACAGAAACCAACAACAAAGAGAAGAAAAAGAAGAAGCAGCTGCTGGTCGTTGAGTTCTTTTTTGGCAAAATGATAGGCTTGGCCTTATGTAGAGGTTCAATGTGCATAGCCACCATTGTCTTCTTAACTTGTGTATGGATCCCTCTGTATCAACTGAAGGCAGCCATCGCGAGCATGTTCGACATTCTGTCGGGCAGGACGTGTCAGATGCTCGCAACAGCGTCGCCACTGTGTGAGGTAAAACTTATGGTTTGTAGGTTCAAAGAGCTGCAGCGTGTGGCCGGATCGGAGGAGGAGATTTGCTCCGTTTGCTTGGCGGAGTTCACCGGAGAAGATTTGATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGATTGACAAAATGGTACTCTCCTCATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTTGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCTAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCAAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG

Coding sequence (CDS)

ATGGTTACAGAAACCAACAACAAAGAGAAGAAAAAGAAGAAGCAGCTGCTGGTCGTTGAGTTCTTTTTTGGCAAAATGATAGGCTTGGCCTTATGTAGAGGTTCAATGTGCATAGCCACCATTGTCTTCTTAACTTGTGTATGGATCCCTCTGTATCAACTGAAGGCAGCCATCGCGAGCATGTTCGACATTCTGTCGGGCAGGACGTGTCAGATGCTCGCAACAGCGTCGCCACTGTGTGAGGTAAAACTTATGGTTTGTAGGTTCAAAGAGCTGCAGCGTGTGGCCGGATCGGAGGAGGAGATTTGCTCCGTTTGCTTGGCGGAGTTCACCGGAGAAGATTTGATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGATTGACAAAATGGTACTCTCCTCATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATTATTCATCATTACGTTGAGATTTTGGACCGTTACTTTGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCTAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCAAGTTCAATAAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

MVTETNNKEKKKKKQLLVVEFFFGKMIGLALCRGSMCIATIVFLTCVWIPLYQLKAAIASMFDILSGRTCQMLATASPLCEVKLMVCRFKELQRVAGSEEEICSVCLAEFTGEDLIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

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BLAST of HG10005526 vs. NCBI nr
Match: KAE8645705.1 (hypothetical protein Csa_020389 [Cucumis sativus])

HSP 1 Score: 453.0 bits (1164), Expect = 1.9e-123
Identity = 233/260 (89.62%), Postives = 243/260 (93.46%), Query Frame = 0


Query: 23  FGKMIGLALCRGSMCIATIVFLTCVWIPLYQLKAAIASMFDILSGRTCQMLATASPLCEV 82
           FG+MIG+ALCRGSM +ATIVFLTCVWIPL QLKAAI+SMFDILSGRTCQML TAS  CEV
Sbjct: 35  FGRMIGMALCRGSMSMATIVFLTCVWIPLSQLKAAISSMFDILSGRTCQMLTTASLPCEV 94

Query: 83  KLMVCRFKELQRVAGSEEEICSVCLAEFTGEDL-------IHFVLLISRQGKVRLTKWYS 142
           KL+VCRF+ELQR  GSEEEICSVCL EFT E L       IHFVLLISRQGKVRLTKWYS
Sbjct: 95  KLLVCRFEELQRAVGSEEEICSVCLTEFTREHLLKGYDFKIHFVLLISRQGKVRLTKWYS 154

Query: 143 PHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEIL 202
           P++QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQ+DNELE+L
Sbjct: 155 PYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQEDNELEVL 214

Query: 203 EIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSL 262
           EIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSL
Sbjct: 215 EIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSL 274

Query: 263 VETAKEQASSISNIIAQATK 276
           VETAKEQASSISNIIAQATK
Sbjct: 275 VETAKEQASSISNIIAQATK 294

[Close]

BLAST of HG10005526 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 429.1 bits (1102), Expect = 2.9e-116
Identity = 220/240 (91.67%), Postives = 227/240 (94.58%), Query Frame = 0


Query: 36  MCIATIVFLTCVWIPLYQLKAAIASMFDILSGRTCQMLATASPLCEVKLMVCRFKELQRV 95
           M +AT+VFLTCVWIPL QLKAAIASMFDILSGRTC ML T    CEVKL+VCRF+ELQR 
Sbjct: 1   MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVP--CEVKLLVCRFEELQRG 60

Query: 96  AGSEEEICSVCLAEFTGEDLIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILN 155
            GSEEEICS+CL EFT E LIHFVLLISRQGKVRLTKWYSP+SQKERSKVIRELSGMILN
Sbjct: 61  VGSEEEICSICLTEFTREHLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILN 120

Query: 156 RGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCEL 215
           RGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCEL
Sbjct: 121 RGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCEL 180

Query: 216 DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 275
           DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 181 DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of HG10005526 vs. NCBI nr
Match: KAG7022803.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 415.6 bits (1067), Expect = 3.3e-112
Identity = 215/250 (86.00%), Postives = 224/250 (89.60%), Query Frame = 0


Query: 26  MIGLALCRGSMCIATIVFLTCVWIPLYQLKAAIASMFDILSGRTCQMLATASPLCEVKLM 85
           MI LAL RG  C+ATIV  TCVWIPL QLK  + SM  ILSGRT Q L      CEVKL 
Sbjct: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 86  VCRFKELQRVAGSEEEICSVCLAEFTGEDLIHFVLLISRQGKVRLTKWYSPHSQKERSKV 145
           VCRF+EL R + SEE+ICSVCLA +TGEDLIHFVLLISRQGKVRLTKWYSP+SQKERSKV
Sbjct: 61  VCRFEELHRGSASEEDICSVCLAGYTGEDLIHFVLLISRQGKVRLTKWYSPYSQKERSKV 120

Query: 146 IRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEIL 205
           IRELSGMILNR PKLCNFVEWRGLKAVYKRYASLYFC+CIDQ+DNELEILEIIHHYVEIL
Sbjct: 121 IRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYVEIL 180

Query: 206 DRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASS 265
           DRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASS
Sbjct: 181 DRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASS 240

Query: 266 ISNIIAQATK 276
           ISNIIAQATK
Sbjct: 241 ISNIIAQATK 250

[Close]

BLAST of HG10005526 vs. NCBI nr
Match: KAG6589096.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 412.9 bits (1060), Expect = 2.1e-111
Identity = 217/253 (85.77%), Postives = 224/253 (88.54%), Query Frame = 0


Query: 26  MIGLALCRGSMCIATIVFLTCVWIPLYQLKAAIASMFDILSGRTCQMLATASPLCEVKLM 85
           MI LAL RG  C+ATIV  TCVWIPL QLK  + SM  ILSGRT Q L      CEVKL 
Sbjct: 1   MISLALGRGPTCVATIVLFTCVWIPLCQLKTFLESMIGILSGRTYQQLTMELLPCEVKLP 60

Query: 86  VCRFKELQRVAGSEEEICSVCLAEFTGEDL---IHFVLLISRQGKVRLTKWYSPHSQKER 145
           VCRFKEL R + SEE+ICSVCLA FTGEDL   IHFVLLISRQGKVRLTKWYSP+SQKER
Sbjct: 61  VCRFKELHRGSASEEDICSVCLAGFTGEDLTKMIHFVLLISRQGKVRLTKWYSPYSQKER 120

Query: 146 SKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYV 205
           SKVIRELSGMILNR PKLCNFVEWRGLKAVYKRYASLYFC+CIDQ+DNELEILEIIHHYV
Sbjct: 121 SKVIRELSGMILNRAPKLCNFVEWRGLKAVYKRYASLYFCLCIDQEDNELEILEIIHHYV 180

Query: 206 EILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQ 265
           EILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQ
Sbjct: 181 EILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQ 240

Query: 266 ASSISNIIAQATK 276
           ASSISNIIAQATK
Sbjct: 241 ASSISNIIAQATK 253

[Close]

BLAST of HG10005526 vs. NCBI nr
Match: KAF3434927.1 (hypothetical protein FNV43_RR22014 [Rhamnella rubrinervis])

HSP 1 Score: 335.5 bits (859), Expect = 4.3e-88
Identity = 184/261 (70.50%), Postives = 203/261 (77.78%), Query Frame = 0


Query: 26  MIGLALCRGSMCIATIVFLTCVWIPLYQLKAAIASMFDILSGRTCQMLATASPLCEVKLM 85
           MI L   +  +  A IVF TCVWIP  QLK A   +  +    TC      S   +  L 
Sbjct: 1   MICLVGSQSHLSTAAIVFCTCVWIPFLQLKRAFFRILGLFFS-TCGEQPLESCCSKTFLP 60

Query: 86  VCRFKELQRVAGSE--------EEICSVCLAEFTGEDL---IHFVLLISRQGKVRLTKWY 145
           V RF +L     SE        +E CS+CL +F  ED+   IHFVLLISRQGKVRLTKWY
Sbjct: 61  VGRFVDLGSCRRSEGISNGEEVDESCSICLVDFDKEDVVSKIHFVLLISRQGKVRLTKWY 120

Query: 146 SPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEI 205
           SP+SQKER+KV+RELSG+IL+RGPKLCNFVEWRG K VYKRYASLYFCMCID++DNELEI
Sbjct: 121 SPYSQKERTKVLRELSGVILSRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDREDNELEI 180

Query: 206 LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDS 265
           LEIIHH+VEILDRYFGSVCELDLIFNFHKAYYILDE+LIAGELQESSKKTVARLIAAQDS
Sbjct: 181 LEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDS 240

Query: 266 LVETAKEQASSISNIIAQATK 276
           LVETAKEQASSISNIIAQATK
Sbjct: 241 LVETAKEQASSISNIIAQATK 260

[Close]

BLAST of HG10005526 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.3e-79
Identity = 146/160 (91.25%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +IHFVLL+SRQGKVRLTKWYSP++QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 234
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 235 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 275
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of HG10005526 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.9e-79
Identity = 145/161 (90.06%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +IHFVLL+SRQGKVRLTKWYSP++QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 234
           RYASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 235 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 276
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of HG10005526 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.4e-57
Identity = 102/141 (72.34%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 117 HFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRY 176
           HF+LL+SRQGK RLTKWYSP + KE+S+  RE+  M+LNR PKLCNF+EW+  K ++KRY
Sbjct: 4   HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRY 63

Query: 177 ASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 236
           ASLYF +C D++DNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDEL++AGE
Sbjct: 64  ASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGE 123

Query: 237 LQESSKKTVARLIAAQDSLVE 258
           LQE+SKKTV RLI+ QD+L+E
Sbjct: 124 LQETSKKTVLRLISQQDTLLE 144

[Close]

BLAST of HG10005526 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-48
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 116 IHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 175
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 176 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 235
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 236 ELQESSKKTVARLIAAQDSLVETAKE 262
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of HG10005526 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.6e-48
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 116 IHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 175
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 176 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 235
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 236 ELQESSKKTVARLIAAQDSLVETAKE 262
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of HG10005526 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 1.4e-116
Identity = 220/240 (91.67%), Postives = 227/240 (94.58%), Query Frame = 0


Query: 36  MCIATIVFLTCVWIPLYQLKAAIASMFDILSGRTCQMLATASPLCEVKLMVCRFKELQRV 95
           M +AT+VFLTCVWIPL QLKAAIASMFDILSGRTC ML T    CEVKL+VCRF+ELQR 
Sbjct: 1   MSMATVVFLTCVWIPLSQLKAAIASMFDILSGRTCPMLTTVP--CEVKLLVCRFEELQRG 60

Query: 96  AGSEEEICSVCLAEFTGEDLIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILN 155
            GSEEEICS+CL EFT E LIHFVLLISRQGKVRLTKWYSP+SQKERSKVIRELSGMILN
Sbjct: 61  VGSEEEICSICLTEFTREHLIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILN 120

Query: 156 RGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCEL 215
           RGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCEL
Sbjct: 121 RGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCEL 180

Query: 216 DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 275
           DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 181 DLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of HG10005526 vs. ExPASy TrEMBL
Match: A0A7J6EPV4 (Clat_adaptor_s domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_000501 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 4.8e-85
Identity = 180/305 (59.02%), Postives = 205/305 (67.21%), Query Frame = 0


Query: 26  MIGLALCRGSMCIATIVFLTCVWIPLYQLKAAIASMFDIL--------------SGRTCQ 85
           MI L + +   C+ TI+F TC+WIPL QLK ++  +   +                   Q
Sbjct: 1   MICLVVSQSRFCVVTIIFYTCIWIPLLQLKKSLIGLLKNIIFFNFDQNDYEINNHANAVQ 60

Query: 86  MLATASPLCEVKL--MVCRFKELQRVAGSEEEICSVCLAEFTGED--------------- 145
                S   ++KL     + +E +     EE +CS+CL +F  ED               
Sbjct: 61  PWLPISRYVDLKLKSQNKKVEEEEEEEEEEEALCSICLVDFEKEDVLVCGVELWWDDVYD 120

Query: 146 ------------------------LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELS 205
                                   +IHFVLLISRQGKVRLTKWYSP+SQKER+KV+RELS
Sbjct: 121 KNNVVQFEKGKPSSSSRSLQNLEEMIHFVLLISRQGKVRLTKWYSPYSQKERTKVLRELS 180

Query: 206 GMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFG 265
           G+IL RGPKLCNFVEWRG K VYKRYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFG
Sbjct: 181 GVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFG 240

Query: 266 SVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNII 276
           SVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKE+ASSISNII
Sbjct: 241 SVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEEASSISNII 300

[Close]

BLAST of HG10005526 vs. ExPASy TrEMBL
Match: A0A1S3CGG1 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 5.0e-82
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +IHFVLLISRQGKVRLTKWYSP+SQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 234
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 235 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 276
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of HG10005526 vs. ExPASy TrEMBL
Match: A0A6J1C1K2 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 1.1e-81
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +IHFVLLISRQGKVRLTKWYSP+SQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 234
           RYASLYFCMCIDQ+DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 235 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 276
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of HG10005526 vs. ExPASy TrEMBL
Match: A0A0A0K1P7 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 3.2e-81
Identity = 156/161 (96.89%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +IHFVLLISRQGKVRLTKWYSP++QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 234
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 235 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 276
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of HG10005526 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 297.7 bits (761), Expect = 9.3e-81
Identity = 146/160 (91.25%), Postives = 156/160 (97.50%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +IHFVLL+SRQGKVRLTKWYSP++QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 234
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 235 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 275
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of HG10005526 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 296.6 bits (758), Expect = 2.1e-80
Identity = 145/161 (90.06%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +IHFVLL+SRQGKVRLTKWYSP++QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 234
           RYASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 235 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 276
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of HG10005526 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 218.0 bits (554), Expect = 9.4e-57
Identity = 100/109 (91.74%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +IHFVLL+SRQGKVRLTKWYSP++QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHK 224
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHK
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of HG10005526 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 5.7e-38
Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 115 LIHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 174
           +I F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR  K  NFVE+R  K +Y+
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 175 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 234
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 235 GELQESSKKTVARLIAAQDSL 256
           GELQE+SK+ +   ++  + L
Sbjct: 121 GELQETSKRAIIERMSELEKL 141

[Close]

BLAST of HG10005526 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 9.2e-28
Identity = 58/138 (42.03%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 116 IHFVLLISRQGKVRLTKWYSPHSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 175
           I F+L++++QG+ RL ++Y   + +ER  +  E+    L R  + C+FVE R  K VY+R
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 176 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 235
           YASL+F + +D D+NEL ILE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 236 ELQESSKKTVARLIAAQD 254
            + E+SK  +   I   D
Sbjct: 123 CIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of HG10005526 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645705.1	1.9e-123	89.62	hypothetical protein Csa_020389 [Cucumis sativus]	[more]
KAA0050549.1	2.9e-116	91.67	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]
KAG7022803.1	3.3e-112	86.00	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6589096.1	2.1e-111	85.77	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF3434927.1	4.3e-88	70.50	hypothetical protein FNV43_RR22014 [Rhamnella rubrinervis]	[more]

BLAST of HG10005526 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	1.3e-79	91.25	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	2.9e-79	90.06	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	2.4e-57	72.34	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	1.6e-48	64.38	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	1.6e-48	64.38	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of HG10005526 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G1	1.4e-116	91.67	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A7J6EPV4	4.8e-85	59.02	Clat_adaptor_s domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_000...	[more]
A0A1S3CGG1	5.0e-82	98.14	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1	[more]
A0A6J1C1K2	1.1e-81	98.14	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=...	[more]
A0A0A0K1P7	3.2e-81	96.89	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1	[more]

BLAST of HG10005526 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	9.3e-81	91.25	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	2.1e-80	90.06	associated protein 19	[more]
AT4G35410.1	9.4e-57	91.74	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	5.7e-38	51.77	SNARE-like superfamily protein	[more]
AT2G19790.1	9.2e-28	42.03	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 115..271 e-value: 2.7E-64 score: 217.7
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 115..265
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 116..254 e-value: 7.5E-53 score: 178.3
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 115..265
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 117..257 e-value: 1.23668E-101 score: 290.999
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 116..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005526.1	HG10005526.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
molecular_function	GO:0035615	clathrin adaptor activity