HG10005463 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005463
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	glycine-rich protein 3
Location	Chr07: 2799502 .. 2799687 (+)
RNA-Seq Expression	HG10005463
Synteny	HG10005463

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGACCAATGGAGACGGAGTCGAGGACGTCAAGCGTCGTTTCCGCAGGGGCCACCATGGGCATGGGCACCACCACTGTCACCACGGTTGCTGCGGTCACCACCACCATGGCGGTTGCAGTAGGTGCTGCAGCTTTGCTGGTGAGGCTGTTGATGGAGAACCCCAAGTCAAGCCTTACAACTGA

mRNA sequence

ATGGAGACCAATGGAGACGGAGTCGAGGACGTCAAGCGTCGTTTCCGCAGGGGCCACCATGGGCATGGGCACCACCACTGTCACCACGGTTGCTGCGGTCACCACCACCATGGCGGTTGCAGTAGGTGCTGCAGCTTTGCTGGTGAGGCTGTTGATGGAGAACCCCAAGTCAAGCCTTACAACTGA

Coding sequence (CDS)

ATGGAGACCAATGGAGACGGAGTCGAGGACGTCAAGCGTCGTTTCCGCAGGGGCCACCATGGGCATGGGCACCACCACTGTCACCACGGTTGCTGCGGTCACCACCACCATGGCGGTTGCAGTAGGTGCTGCAGCTTTGCTGGTGAGGCTGTTGATGGAGAACCCCAAGTCAAGCCTTACAACTGA

Protein sequence

METNGDGVEDVKRRFRRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEPQVKPYN

Homology

[Close]

BLAST of HG10005463 vs. NCBI nr
Match: XP_038888674.1 (glycine-rich protein-like [Benincasa hispida])

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 48/55 (87.27%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1  METNGDGVEDVKRRFRRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEP 56
          METNG G EDVKRRFRRGH  HGH HCHHGCCGHHH GGCSRCCSFAGEAVD EP
Sbjct: 39 METNGGGFEDVKRRFRRGH--HGHRHCHHGCCGHHHLGGCSRCCSFAGEAVDAEP 91

[Close]

BLAST of HG10005463 vs. NCBI nr
Match: XP_022136254.1 (glycine-rich protein 3 short isoform-like [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-07
Identity = 35/72 (48.61%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 5   GDGVEDVKRRFRRGHHGHGHH---------------HCHHGCCGHHHHGGCSRCCSFAGE 62
           G G +    R+  G+ GHG H               HCHHGCCG  +HG C RCCS+AGE
Sbjct: 55  GGGYDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG--YHGSCGRCCSYAGE 114

[Close]

BLAST of HG10005463 vs. NCBI nr
Match: XP_023529828.1 (glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  METNGDGVEDVKRRFRRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEPQVKPY 60
          METNGDG+ED KRRF  GHHGH HHH HH    HH   GCS     A E V+ +PQ KP 
Sbjct: 39 METNGDGIEDDKRRFGGGHHGHRHHHRHHHRHRHHCRHGCS-----ADEDVNEDPQAKPN 94

Query: 61 N 62
          N
Sbjct: 99 N 94

[Close]

BLAST of HG10005463 vs. NCBI nr
Match: KAG6589124.1 (hypothetical protein SDJN03_17689, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022826.1 hypothetical protein SDJN02_16562 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  METNGDGVEDVKRRFRRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEPQVKPY 60
          METNGDG+ED KRRF  GHHGH HHH HH    HH   GCS     A E V+ +PQ KP 
Sbjct: 39 METNGDGIEDDKRRFGGGHHGHRHHHRHHHRHRHHCRHGCS-----ADEDVNEDPQAKPN 94

Query: 61 N 62
          N
Sbjct: 99 N 94

[Close]

BLAST of HG10005463 vs. NCBI nr
Match: XP_022930749.1 (glycine-rich protein DC7.1-like [Cucurbita moschata])

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-06
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  METNGDGVEDVKRRFRRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEPQVKPY 60
          METNGDG+ED KRRF  GHHGH HHH HH    HH   GCS     A E V+ +PQ KP 
Sbjct: 39 METNGDGIEDDKRRFGGGHHGHRHHHRHHHRHRHHCRHGCS-----ADEDVNEDPQAKPN 94

Query: 61 N 62
          N
Sbjct: 99 N 94

[Close]

BLAST of HG10005463 vs. ExPASy TrEMBL
Match: A0A6J1C3T3 (glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC111007996 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 35/72 (48.61%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 5   GDGVEDVKRRFRRGHHGHGHH---------------HCHHGCCGHHHHGGCSRCCSFAGE 62
           G G +    R+  G+ GHG H               HCHHGCCG  +HG C RCCS+AGE
Sbjct: 55  GGGYDRGHSRYGGGYPGHGGHYGGGYPGRGRYGGGRHCHHGCCG--YHGSCGRCCSYAGE 114

[Close]

BLAST of HG10005463 vs. ExPASy TrEMBL
Match: A0A6J1ESD5 (glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.9e-07
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1  METNGDGVEDVKRRFRRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEPQVKPY 60
          METNGDG+ED KRRF  GHHGH HHH HH    HH   GCS     A E V+ +PQ KP 
Sbjct: 39 METNGDGIEDDKRRFGGGHHGHRHHHRHHHRHRHHCRHGCS-----ADEDVNEDPQAKPN 94

Query: 61 N 62
          N
Sbjct: 99 N 94

[Close]

BLAST of HG10005463 vs. ExPASy TrEMBL
Match: A0A6J1JMI7 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-06
Identity = 35/61 (57.38%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 1  METNGDGVEDVKRRFRRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEPQVKPY 60
          METNGDG+ED KRRF  GHHGH HHH        HHH  C   CS A E V+ +PQ KP 
Sbjct: 39 METNGDGIEDDKRRFGGGHHGHKHHH-------RHHHRHCRHGCS-ADEDVNEDPQAKPN 91

Query: 61 N 62
          N
Sbjct: 99 N 91

[Close]

BLAST of HG10005463 vs. ExPASy TrEMBL
Match: Q9MBF4 (Glycine-rich protein OS=Citrus unshiu OX=55188 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 18  GHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEPQVKPYN 62
           G  GHG  HC +GCCGH +HGGC RCC++AGEAVD EP+ +P N
Sbjct: 85  GGGGHGGGHCRYGCCGHGYHGGC-RCCTYAGEAVDTEPETEPQN 127

[Close]

BLAST of HG10005463 vs. ExPASy TrEMBL
Match: A0A2H5PLG5 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_147590 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 27  CHHGCCGHHHHGGCSRCCSFAGEAVDGEPQVKPYN 62
           C +GCCGH +HGGC RCC++AGEAVD EP+ +P N
Sbjct: 91  CRYGCCGHGYHGGC-RCCTYAGEAVDTEPETEPQN 124

[Close]

BLAST of HG10005463 vs. TAIR 10
Match: AT2G05530.1 (Glycine-rich protein family )

HSP 1 Score: 41.2 bits (95), Expect = 3.5e-04
Identity = 22/41 (53.66%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 15  FRRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEP 56
           +  G HG  H +C +GCC   +H GCSRCCS+AGEAV  +P
Sbjct: 74  YNGGGHGGRHGYCRYGCCYRGYH-GCSRCCSYAGEAVQTQP 113

[Close]

BLAST of HG10005463 vs. TAIR 10
Match: AT2G05520.1 (glycine-rich protein 3 )

HSP 1 Score: 40.4 bits (93), Expect = 6.0e-04
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 16  RRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEP 56
           R+G  G G  +C HGCC +  + GCSRCCS+AGEAV  +P
Sbjct: 105 RQGGGGSGGSYCRHGCC-YRGYNGCSRCCSYAGEAVQTQP 143

[Close]

BLAST of HG10005463 vs. TAIR 10
Match: AT2G05520.2 (glycine-rich protein 3 )

HSP 1 Score: 40.4 bits (93), Expect = 6.0e-04
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 16  RRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEP 56
           R+G  G G  +C HGCC +  + GCSRCCS+AGEAV  +P
Sbjct: 98  RQGGGGSGGSYCRHGCC-YRGYNGCSRCCSYAGEAVQTQP 136

[Close]

BLAST of HG10005463 vs. TAIR 10
Match: AT2G05520.3 (glycine-rich protein 3 )

HSP 1 Score: 40.4 bits (93), Expect = 6.0e-04
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 16  RRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEP 56
           R+G  G G  +C HGCC +  + GCSRCCS+AGEAV  +P
Sbjct: 85  RQGGGGSGGSYCRHGCC-YRGYNGCSRCCSYAGEAVQTQP 123

[Close]

BLAST of HG10005463 vs. TAIR 10
Match: AT2G05520.4 (glycine-rich protein 3 )

HSP 1 Score: 40.4 bits (93), Expect = 6.0e-04
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 0


Query: 16  RRGHHGHGHHHCHHGCCGHHHHGGCSRCCSFAGEAVDGEP 56
           R+G  G G  +C HGCC +  + GCSRCCS+AGEAV  +P
Sbjct: 84  RQGGGGSGGSYCRHGCC-YRGYNGCSRCCSYAGEAVQTQP 122

The following BLAST results are available for this feature:

BLAST of HG10005463 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888674.1	2.3e-18	87.27	glycine-rich protein-like [Benincasa hispida]	[more]
XP_022136254.1	5.4e-07	48.61	glycine-rich protein 3 short isoform-like [Momordica charantia]	[more]
XP_023529828.1	2.1e-06	59.02	glycine-rich protein DC7.1-like [Cucurbita pepo subsp. pepo]	[more]
KAG6589124.1	2.1e-06	59.02	hypothetical protein SDJN03_17689, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022930749.1	2.1e-06	59.02	glycine-rich protein DC7.1-like [Cucurbita moschata]	[more]

BLAST of HG10005463 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005463 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3T3	2.6e-07	48.61	glycine-rich protein 3 short isoform-like OS=Momordica charantia OX=3673 GN=LOC1...	[more]
A0A6J1ESD5	9.9e-07	59.02	glycine-rich protein DC7.1-like OS=Cucurbita moschata OX=3662 GN=LOC111437131 PE...	[more]
A0A6J1JMI7	1.7e-06	57.38	glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486537 PE=4...	[more]
Q9MBF4	1.4e-05	63.64	Glycine-rich protein OS=Citrus unshiu OX=55188 PE=4 SV=1	[more]
A0A2H5PLG5	1.6e-04	65.71	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_147590 PE=4 SV=1	[more]

BLAST of HG10005463 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G05530.1	3.5e-04	53.66	Glycine-rich protein family	[more]
AT2G05520.1	6.0e-04	55.00	glycine-rich protein 3	[more]
AT2G05520.2	6.0e-04	55.00	glycine-rich protein 3	[more]
AT2G05520.3	6.0e-04	55.00	glycine-rich protein 3	[more]
AT2G05520.4	6.0e-04	55.00	glycine-rich protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005463.1	HG10005463.1	mRNA