HG10005453 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005453
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Nucleic acid-binding, OB-fold-like protein
Location	Chr07: 2722273 .. 2724048 (-)
RNA-Seq Expression	HG10005453
Synteny	HG10005453

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACACCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACAAGCGGCCACACTCTCACGGTCAAGGTCGTGAGTTCCAAAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCCCGTCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGGTATGTTTCTCTGCTACCTAAGAATGTTTGAAAGCCTAATTTTTCTCGTCTTTTGGATGTATCCATGTACTTGCTGAGATGATTTTGTGTATGGTTACGAAAATCGTTGGAAAGAACAGATGGATTTTAGTTTCCATTTCCTTGGATGTTTTGCTGTGATTGAGAATTCTTTTGGAACAGTGAGTGGTCTTCTTTTTTGTTTGTGAATTTCGTCTTTGCTCCGCGTGAATTTCGTCTTTGCTCCGCGTGAATTAAGGATTATTCTCTATAGCTTTTTTTGTTTAATCAGTAGTAGAAACTTTTCCTTGATAATTGAGAAGTTACAATATAGACTACAAAAAAAAAACACTCTTTTAAGGGTATTATACAAGTAAAAAAAGGGGTGCCCCAACGAAAATTTAATTCAACCACCCACTGGATATTTTGTTTCGTTCACTAGTTTTGTAATGGTTATTTTCTTATATAAATAGAATTTGGATGTTGAGATAATTGTATAACAAGGAGTGTTATCACAATCGATCATTGAGATTCAAGAACACTTGGCAATGGCTTTAACTAGGTCCGAAATAGAAATGCTTTTTGGGCAAAACACTTAGGTTTTTTGGATTGACTTTATAAATGCTTAAAATTGATTTTTTTATACACACTCAAAAACACTTTTTTTAAACCCTTAGAGAATCATTTCAAACAGACTCTTCTATGTACTAAAGGTGCAAAGGGAAGTACATTGTTGAATAGAGAATACAAAGAATTATTTTAAGGTAGGATATCTTTCTTCCAAGCTCTTGAAGGATCCTTAAGGACAGTTAGTGTTTGAGTGTTTTGGTCTGTGAGAGGGATTTTACTGGTCAGTATAGAGCTTCTTTTCCGTTCATCTCCTTTAAATCAGGAGCTTTGAGATGGTAGATTGAGGTTATGGTTATGGCTATGGGTGTAGTAGACATACTTTAGTCTCCCTGTTAATTTTCCTTTTGATTTGAAATCTGTTGTTTATCTAATTGCATAGCCGTTTCTTTATCTATTGCCTTGAACCTAGCGATTCATAGTTTTGCCTCTGCTTGGTATTAAGAACCTATTGCCGTGTATCTTGTATATTATAGGCTGTGAAATGCTTGCATTGGTGGGAGTGATCTTCAATCCTTACTCAACACCCCCCCCCCCCCCAAACAATATATATGTATATGTAATTAATGTTTATGGTGTAATAGCCAAAATGAGCATAGCTCGTATGAACTATTAACTTCGAGGTCAGAGGTTCAATCCCCCACCCCACGTATTGTTTAAAAAAAAAGGCTTTAGGTGTAATATTATCTAAACAAATAGTTGTAATTTTTGCAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGTTCAATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTTGCCGAAGCAGCCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA

mRNA sequence

ATGGCGACACCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACAAGCGGCCACACTCTCACGGTCAAGGTCGTGAGTTCCAAAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCCCGTCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGTTCAATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTTGCCGAAGCAGCCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA

Coding sequence (CDS)

ATGGCGACACCGGCAGTGAATGCTCCAGCAAAGAGGAAGCCTGTGTTCGTAAAAGTAGAAGAGCTTAAGCCTGGTACAAGCGGCCACACTCTCACGGTCAAGGTCGTGAGTTCCAAAAATGTCAAGGTTGTCAATAAAGGTGGACGATCCACCATGCTTACGGCCCGTCCTCAGCAATTAACTCGAATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTCAAAGGTTCAATGAGGTTAGCAGTAGATAAATGGGGACGAGTTGAAGTTGCCGAAGCAGCCAACTTTGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAATATGAATTGGTTAACGTTGAAGAATGA

Protein sequence

MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNLSLVEYELVNVEE

Homology

[Close]

BLAST of HG10005453 vs. NCBI nr
Match: XP_038887250.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-71
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E ANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. NCBI nr
Match: XP_008455497.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 uncharacterized protein E6C27_scaffold430G00240 [Cucumis melo var. makuwa] >TYK21622.1 uncharacterized protein E5676_scaffold150G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 276.9 bits (707), Expect = 9.6e-71
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E ANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. NCBI nr
Match: XP_004144523.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN43465.1 hypothetical protein Csa_020344 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 4.8e-70
Identity = 141/145 (97.24%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E ANFE KEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. NCBI nr
Match: XP_022136009.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 269.2 bits (687), Expect = 2.0e-68
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQL
Sbjct: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKMVNKGGRSAMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E ANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. NCBI nr
Match: XP_022988994.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7022832.1 hypothetical protein SDJN02_16568 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 267.7 bits (683), Expect = 5.9e-68
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E A+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-46
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 11  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGD 70
           KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 71  ETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEAANFEVKED 130
           ETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGR+E   AA+F VKED
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

Query: 131 NNLSLVEYELVNV 144
           NNLSLVEYEL+NV
Sbjct: 137 NNLSLVEYELINV 149

[Close]

BLAST of HG10005453 vs. ExPASy Swiss-Prot
Match: Q97W73 (Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) OX=273057 GN=ssb PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-04
Identity = 34/117 (29.06%), Postives = 53/117 (45.30%), Query Frame = 0


Query: 18  KVEELKPGTSGHTLTVKVVSSKNVK-VVNKGGRSTMLTARPQQLTRISECLVGDETGSIV 77
           KV  LKP      +TV+V+ +   + +  K G  T           ISE +VGDETG + 
Sbjct: 4   KVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRT-----------ISEAIVGDETGRVK 63

Query: 78  FTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEAANFEVKEDNNL 134
            T        +K G  V + NA    FKG ++L  +   + ++AEA+     E + +
Sbjct: 64  LTLWGKHAGSIKEGQVVKIENAWTTAFKGQVQL--NAGSKTKIAEASEDGFPESSQI 107

[Close]

BLAST of HG10005453 vs. ExPASy TrEMBL
Match: A0A5A7UWS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00200 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E ANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. ExPASy TrEMBL
Match: A0A1S3C119 (uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E ANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. ExPASy TrEMBL
Match: A0A0A0K1C6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038160 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.3e-70
Identity = 141/145 (97.24%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPA NAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E ANFE KEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. ExPASy TrEMBL
Match: A0A6J1C327 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111007815 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.7e-69
Identity = 138/145 (95.17%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MAT AVNAPAKRKPVF+KVEELKPGTSGHTL VKVVSSKNVK+VNKGGRS MLTARPQQL
Sbjct: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKMVNKGGRSAMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E ANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. ExPASy TrEMBL
Match: A0A6J1JN47 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111486189 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.8e-68
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60
           MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA 120
           TRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKIDMFKGSMRLAVDKWGR+EVA
Sbjct: 61  TRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVA 120

Query: 121 EAANFEVKEDNNLSLVEYELVNVEE 146
           E A+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 EPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of HG10005453 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 187.6 bits (475), Expect = 7.2e-48
Identity = 93/133 (69.92%), Postives = 109/133 (81.95%), Query Frame = 0


Query: 11  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGD 70
           KRKPVFVKVE+LKPGT+GHTLTVKV+ +  V  V +  R     +RP Q +RI ECL+GD
Sbjct: 17  KRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGD 76

Query: 71  ETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEAANFEVKED 130
           ETG I+FTARNDQVD+MKPG TV LRN++IDMFKG+MRL VDKWGR+E   AA+F VKED
Sbjct: 77  ETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKED 136

Query: 131 NNLSLVEYELVNV 144
           NNLSLVEYEL+NV
Sbjct: 137 NNLSLVEYELINV 149

[Close]

BLAST of HG10005453 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 181.4 bits (459), Expect = 5.1e-46
Identity = 97/135 (71.85%), Postives = 108/135 (80.00%), Query Frame = 0


Query: 11  KRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGD 70
           K+KPVFVKV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RISECLVGD
Sbjct: 52  KKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP--QKPGAASSSHLRP---ARISECLVGD 111

Query: 71  ETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEAANFEVKED 130
           ET  I+FTARNDQV++MKPG TV LRNAKIDMFKGSMRLAVDKWGR+E  E A+  VKED
Sbjct: 112 ETACILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKED 171

Query: 131 NNLSLVEYELVNVEE 146
           NNLSLVEYELVNV E
Sbjct: 172 NNLSLVEYELVNVVE 181

[Close]

BLAST of HG10005453 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 174.9 bits (442), Expect = 4.8e-44
Identity = 92/134 (68.66%), Postives = 110/134 (82.09%), Query Frame = 0


Query: 12  RKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVGDE 71
           +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDE
Sbjct: 10  KKPAFTKVDQLRPGTSGHNVNVKIVST---KMVLQKGRADGPQARQ---LRISECIVGDE 69

Query: 72  TGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVAEAANFEVKEDN 131
           TG IVFTARNDQVD+MK G+TVTLRNAKIDM+KGSMRLAVDKWGRVEV E A+F+VKED 
Sbjct: 70  TGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVKEDT 129

Query: 132 NLSLVEYELVNVEE 146
           N+SL+EYELVNV E
Sbjct: 130 NMSLIEYELVNVVE 137

[Close]

BLAST of HG10005453 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-42
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 10  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVG 69
           A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVG
Sbjct: 7   ALRKPVFTKVNELRPGTNGHSLNVKVVNTK--MVMQRGGGRPMGPQSRQM--RIAECLVG 66

Query: 70  DETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA-EAANFEVK 129
           DETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGRVEVA E  +  VK
Sbjct: 67  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 126

Query: 130 EDNNLSLVEYELVNVE 145
           +DNNLSL+EYELV+VE
Sbjct: 127 DDNNLSLIEYELVSVE 138

[Close]

BLAST of HG10005453 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-42
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 0


Query: 10  AKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQLTRISECLVG 69
           A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q   RI+ECLVG
Sbjct: 21  ALRKPVFTKVNELRPGTNGHSLNVKVVNTK--MVMQRGGGRPMGPQSRQM--RIAECLVG 80

Query: 70  DETGSIVFTARNDQVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRVEVA-EAANFEVK 129
           DETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRLAVD+WGRVEVA E  +  VK
Sbjct: 81  DETGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVK 140

Query: 130 EDNNLSLVEYELVNVE 145
           +DNNLSL+EYELV+VE
Sbjct: 141 DDNNLSLIEYELVSVE 152

The following BLAST results are available for this feature:

BLAST of HG10005453 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887250.1	3.3e-71	99.31	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_008455497.1	9.6e-71	98.62	PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 unchar...	[more]
XP_004144523.1	4.8e-70	97.24	uncharacterized protein At4g28440 [Cucumis sativus] >KGN43465.1 hypothetical pro...	[more]
XP_022136009.1	2.0e-68	95.17	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_022988994.1	5.9e-68	93.79	uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 unchar...	[more]

BLAST of HG10005453 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	1.0e-46	69.92	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]
Q97W73	4.7e-04	29.06	Single-stranded DNA binding protein Ssb OS=Saccharolobus solfataricus (strain AT...	[more]

BLAST of HG10005453 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWS4	4.7e-71	98.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C119	4.7e-71	98.62	uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 S...	[more]
A0A0A0K1C6	2.3e-70	97.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038160 PE=4 SV=1	[more]
A0A6J1C327	9.7e-69	95.17	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1JN47	2.8e-68	93.79	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114861...	[more]

BLAST of HG10005453 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28440.1	7.2e-48	69.92	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	5.1e-46	71.85	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	4.8e-44	68.66	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	2.0e-42	67.65	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	2.0e-42	67.65	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 26..135 e-value: 1.5E-42 score: 146.0
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 6..144
None	No IPR available	PANTHER	PTHR31472:SF13	EXPRESSED PROTEIN	coord: 6..144
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 61..119 e-value: 1.1093E-16 score: 68.0333
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 7..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005453.1	HG10005453.1	mRNA