HG10005418 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005418
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr07: 2385764 .. 2385976 (+)
RNA-Seq ExpressionHG10005418
SyntenyHG10005418
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCATTTCCACCTCCGTCTTGTTCTTGCCATTTTTCTTCTTCTTCTTCTAACTCCGACCACCGCCGCCGCCGCCGTCCAGGCAAGGATTCCGATGAGAAAACAAGTGATTTTCCGGCCGTCTTCACCGTCAGCACAAAAATTTACAGACTTTGAAGAACAAAAGCGAAGAGTCCCCACAGGATCAAACCCTTTACACAACAAACGGTGA

mRNA sequence

ATGACTCATTTCCACCTCCGTCTTGTTCTTGCCATTTTTCTTCTTCTTCTTCTAACTCCGACCACCGCCGCCGCCGCCGTCCAGGCAAGGATTCCGATGAGAAAACAAGTGATTTTCCGGCCGTCTTCACCGTCAGCACAAAAATTTACAGACTTTGAAGAACAAAAGCGAAGAGTCCCCACAGGATCAAACCCTTTACACAACAAACGGTGA

Coding sequence (CDS)

ATGACTCATTTCCACCTCCGTCTTGTTCTTGCCATTTTTCTTCTTCTTCTTCTAACTCCGACCACCGCCGCCGCCGCCGTCCAGGCAAGGATTCCGATGAGAAAACAAGTGATTTTCCGGCCGTCTTCACCGTCAGCACAAAAATTTACAGACTTTGAAGAACAAAAGCGAAGAGTCCCCACAGGATCAAACCCTTTACACAACAAACGGTGA

Protein sequence

MTHFHLRLVLAIFLLLLLTPTTAAAAVQARIPMRKQVIFRPSSPSAQKFTDFEEQKRRVPTGSNPLHNKR
Homology
BLAST of HG10005418 vs. NCBI nr
Match: KAG6572280.1 (hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 2.3e-17
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MTHFHLRLVLAIFLLL--LLTPTTAAAAVQARIPMRKQVIFRPSSPSAQKFTDFEEQKRR 60
          MTHFHL LVLAIFLLL    T T A+AA Q RI MRKQV+FRP SPS  KFT++EEQKRR
Sbjct: 1  MTHFHLSLVLAIFLLLTPTTTATAASAAAQPRILMRKQVVFRPPSPSPYKFTNYEEQKRR 60

Query: 61 VPTGSNPLHNKR 71
          VPTGSNPLHNKR
Sbjct: 61 VPTGSNPLHNKR 72

BLAST of HG10005418 vs. NCBI nr
Match: KAG6589151.1 (hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 49/65 (75.38%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 1  MTHFHLRLVLAIFLLLLLTPTTAA----AAVQARIPMRKQVIFRPSSPSAQKFTDFEEQK 60
          MTHFHLRL+L I LLLLLTPTTAA    AAV+ RI +RKQVIFRPSSPS  K  DFE+QK
Sbjct: 1  MTHFHLRLLLPI-LLLLLTPTTAATVASAAVRPRISLRKQVIFRPSSPSTTKPIDFEDQK 60

Query: 61 RRVPT 62
          RRVPT
Sbjct: 61 RRVPT 64

BLAST of HG10005418 vs. NCBI nr
Match: ABK94087.1 (unknown [Populus trichocarpa] >PNT05104.1 hypothetical protein POPTR_014G156600 [Populus trichocarpa])

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-04
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 1  MTHFHLRLVLAIFLLLLLTPTTAAAAVQA-RIPMRKQVIFRP---SSPSAQKFTDFEEQK 60
          M  FHL L+LA+ +    TP ++ AA ++   P   Q +FR    +SP A++  +FE QK
Sbjct: 1  MKLFHLFLLLALLIFFSSTPRSSHAARRSFSAPSTSQQVFRSPFRASPFAERAKEFESQK 60

Query: 61 RRVPTGSNPLHNKR 71
          R+VPTGSNPLHNKR
Sbjct: 61 RKVPTGSNPLHNKR 74

BLAST of HG10005418 vs. ExPASy TrEMBL
Match: A9PCI4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G156600 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-04
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 1  MTHFHLRLVLAIFLLLLLTPTTAAAAVQA-RIPMRKQVIFRP---SSPSAQKFTDFEEQK 60
          M  FHL L+LA+ +    TP ++ AA ++   P   Q +FR    +SP A++  +FE QK
Sbjct: 1  MKLFHLFLLLALLIFFSSTPRSSHAARRSFSAPSTSQQVFRSPFRASPFAERAKEFESQK 60

Query: 61 RRVPTGSNPLHNKR 71
          R+VPTGSNPLHNKR
Sbjct: 61 RKVPTGSNPLHNKR 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6572280.12.3e-1776.39hypothetical protein SDJN03_29008, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589151.11.4e-1175.38hypothetical protein SDJN03_17716, partial [Cucurbita argyrosperma subsp. sorori... [more]
ABK94087.12.2e-0447.30unknown [Populus trichocarpa] >PNT05104.1 hypothetical protein POPTR_014G156600 ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A9PCI41.1e-0447.30Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_014G156600 PE=2 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005418.1HG10005418.1mRNA