HG10005400 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005400
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein RRP6-like 3 isoform X1
Location	Chr07: 2182591 .. 2189818 (+)
RNA-Seq Expression	HG10005400
Synteny	HG10005400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTCAACACAAGGTCAAAATCGCTCTAGTTGTAGCGTCTTTCGCAGCGCTTACGATCTTATTTACAGCCAGACGGCGCAGGAAGCGAAGGAGCGTTCGTAGTTCGTGTTATTTACGAGATGACCAGAAGCCTCAGTACGCATTTAAACGTGTATTGGCCGAAAATTCTTATTCTGCGTTCAAGCACTTGAAGCGCAATATGAATAAAGGTATAGATGGTCCATTACTCTATTTCAAATTTGATACTGCGTTTAGTTGCTGAGACTGTGTTGTTTTTAGTAGCGAATAGAGTGTTTACTGAAGGAATGTTGTTTTTCATTGATTGTTTGGGAAAAGATTGGTTAAGTTCTTTTTAAGCTGAATATTTTCCATGGAGCAACAGGATGTAGGGAAATGGAAATCTAGAAGATTCTTTATATATACTTTTTATTTTATAGTTAGCGATGGAGTCATGAATGCTAATTTACTTCTGTAAGGATTATTGGTTACAAGTCTTCATCAATGGCTATTATTTGTCTTCTCGTCAATCTTCATGTACTATTTTTGTAAAAGATTTTGCAATGGGGGTTCTCATGTACTTATAAGGAGGTTGACTGAGGAAGTGCGTTATTTTGCAGATAATGATGTAAACTCGCATCCCTACGAGTCAGAAATACTATCATTGCTAGAAAATTCTTCGTCTGAATTCGATTTTATTAGTGAAGGAACAGATTTAACTTTGAGTGACACTTATGTTTGGGTTGAGACCGAGTCCCAGTTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCTTTAATACAGGTAATTGTTTTTTTTCTCTCGCTGAAAGAGGCCTAAGCACACCTAAATTGATGAATCTTTCCATGCAATCCCCGTTTCTTTAATTGTTACGGACATTATTTGTTTTTGTTTTTGTTTTTTATTTTTATTTTATTTTGTTTGAAGCAGATTTCTACACACGAGGAAGATTATTTGGTCGACACTATAGCTCTACACGATTCAATGAATCTTCTACGTCCTGTCTTTGCCAATAGTCGTATTTGCAAGGTATCTAAATATATGCTTGGGTGCTTGTTTAAGGGTCTGATTTTAGTCAGACAAGCTTGGTATATAAATTAAAAGCAAGAAAGGTTTCAGTACAGTATCGATTCGGTATTGATGAGAAAAGTGCAGCAATTACATCTTCTGAGGAATTCTACTGATTCTCCTTTTGGATTTAATATTTTATTTAGTATAGAAAAGTTGTTGGTTTATGATTGCAAGGTTAATGAAATTATTTTTGTTTTTAGGTGTTTCATGGCGCTGATAATGACATTCTATGGTTACAAAGGGACTTTCATATATATGTTGTCAATTTATTTGATACTGCAAAGGTGAACATATGCTTCTCAACGGAAAGAAATGTTACCTTTGTAAAAAGGGGAAAAAAGGAAACAATGCACTTCTCATATGGGAAAGAGTGGGATGTTTTTCATTTTTTTCATCTTGTGCTTCTTGTTAAATGTAGGCATGTGAAGTGTTATCAAAACCTCAGAAGTCATTGGCCTACTTACTTGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGGTTGGACATCTTGTCTTATAATTTACTGAATCGCTGATGTGGTGTGAAAATCAACATCTTGACCATCTGATTTGAGATATAAGTCAATTATTATTATCTAGTTACAGTCATGGTGGTAGAGCATATTTTAGTGATCAATATTTTAATTAAACCCATTCTACTTTTGGCGTCACCTTGAATAAGGTAAGGGCTGATTCATATCCAATCTTGTTGTACATATAACAACATTTTCAGCCTTGCTTATTTGTGTTTACTCATTAATGGTCAGCGAGAAGATTGGAGACAACGGCCCCTATCTGCAGATATGGTGCAATATGCTAGGACAGATGCCCACTATCTCCTATATATTGCGAACTGTTTACTCTCTGAGCTGAAACAAGTTAATGGTATGTCTTGGATCTCACGCTTGTGTTTGGTGTCATTCATTTGTTGTATGACTTGTTTACATGTAACATGCAAATGTGGAGAAAATAACTGTGGAAAAAAGGTGAACATAATGATATCAATGAATAAGGAAGCAAATAGGATTGCACATGAGTAATGTGCTAAAAAAATTTCTTTGCTCAACCTTGTGCAATTTGCATAATAAACTCAATGATGAAAATATTACCCATGATATTTTTGTTACATGTCTCCATATTGGTGAGAACTATATTTCTCTTCCATCTTGTAAAAGTGTGAAAAGTTTTAAGTCAAAAGTGGTTTTAGAAATTGATTCGATGGATTTGTTTTTATAGCTGTTAGATAGATTGTAGAATTAGGATGAAGGTTGTATAATATATCAATTGGCATTAAAATTTTATTTGTTGTGTCATTTTTTTTTAATTATACACTTTCAATTAAGGAACGTTCTTCAAAATTCAACATCTATGTTGATATTTTCTTAATTTTGAGGTCCTGATATTTTGTTGACATTGATATCTACTTTATGCTTATCCTCCCATCCCACTATTCCATATCTCGTGTGATGACTTTGACATTGTCATCTTTGATTACTCCAAACATTTGGGGAAAAAAGTTTACTTTCTGTATGTAGCCTCACTTTTTTAGGCCAGAGCTGAAGTAATCAACAACTTTAGTTGGTTAACTTCAAATTATATCTTCTTCCATATCATCAAATATCTAAAAGCATTAATGTATCAGAAAACTCTTCCACCGATGATAAATTCAATTTTCTTCTCGAGGCTAGTCGGCGATCAAACATGACTTCTTTGCAACTCTATTCAAAAGAGACTGATGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCCCGTTATTTAAACGGTCAAGGTGGTAGTACACTAATTTCCTGTAAAACTCAGGTAAGCTGTTTCCTTGACAACTTTGATGCTGTAACATTTGAAGCGGTATCACCATACAAATTTATGATATTTTATCACCGAACTTTGAACTTTCAGTTTCAGGATTATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGTTAGTAGTTAATTATCTAAAAAAAATCAAGAAACATATTAGGTTATTCTCTAAGATTTGTGTAGTTGTTTTGTTTTGAATTTTTCTTAATTTGTTATAATTTGATTAAGAATTTTAAGTAACCCCTTTTATATGTGGTTATAGCTCATGTATAATTTTTTATAGGATGGAAGGTAGAGGTTGGTTCACCATGGAATTTCATTCATAAATGTAAATATTTGATGGGAGGTCATTTTCATGTCATAGTTGGAGAACCATTGGCTTTTCCACCAACGTCTAAAAGCAGTCTTGCCCTCATCATCTAATGTGACCTCCAAAACATTGTAGACTGACCTTTCACTGTAACTGCTCCCATAGTAGGTTGGTTGCTTAGGCGGAGAAGTTCCTTCCAGATGGTGAGCCTGAAGATTGGATTTCTGTGATGAACTCCTTAAATCATTGTACTTTAGTGAGGGTCAAAACTTAATTTTATGAAGTCCGGATAAATATGGAATGTCCTGGGTTCAATCGTTCTATAGTCATCTCACAAATAAAGCAAATAATTTTACTAATTAGGAGTTTAAGGAGGAATAAATATCCTAAAAAGTCAAATTCTTTATTCGGCCTCTGGTTCCAAAAGGATTAAATCGGCTGACATGATTGAAAAGAGAAATAATTTCAATTGCCTCTCTCCAAGTTGGCTAAAAATTAGACATCATGAGGGGCAGACATCCCTTGTCATTTCATCGTGAAACCTGACACACTACCATCCATGCTACTGGTTCCTTTTGCTTAAAAGGACCATAATAGACAAATCAACTATAATGGTTGCTTAAAAAGAAATTTCTTAGCGATGGTATAGGCATGTAATTATGTTAGCAATCTTTAGCTTGCCTTTATTATGTATCCTTTCATTAGATTAATGACAAAACAAAAGTTTCATTATGGCTGCTTACCTGAAATTGAGATTGCCATTTCATATCAGGCCCGAGTTCATGATGAGAGCCTGAGATATGTCTTGTCAGATCAGGCTATAGTAGTTCTTGCAAATCAAGTGTCAAAAAATACGGGGGAGTTATATGCAACTATAGCACAAGCTGATTTGAATGTGGATTTGAGTTCCAGTCTGTTTCTTCCATCTCCCTCCCCTGTTGTTTGCAGCCACTTGGATGATATCCACCATCTCCTCCATGACAAGTCTCGCAACCTTGATAATATTTTTTTGGTGATTTTACAGAACTGCATAGGTTCTGATGGTAGCTGCCCCCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGACAATATCTAAACATAATGATAGAAAGAATGCAAAGCAAATATCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTTTCCTGCAAGTCTCCAGTTTACCATAATTTTAGGATTTATGCAAATGATGGACGCTTGCTTTGCTACTGTGATCGGCGAAAACTCGAATGGTTGGTTGCATCTCTAGTTTCATTTAAGTTAGATTGTAACTGTTGATGCATGTTTGACACTAAGCAATTATCTTCAAATTTAAACAGGTACTTGCGCCGAGAGTTGGCAGAGCTTGTTGCTGATGATCCTCCTGCCATAAAGCTTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCACTATTTACGCTATCGAATTATCCCCTCATGCTACAGAATACACTTTCCTGAGCATTTAAAAAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGCCATGAAGCTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGAGCTTGCTGCAGAATTTGGAATTCCTCTTTTTGTTCGTAGAGTGGTTGATGCTAAGGAAGCCTTTGATATGGCTGAGCCATCTGACTCGGGAACCAATGTTCAGGAGGAAGGCGTGTCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTGTTGAGGCATGGACCAAGAATGCCATCAAAGCGTCAAGAGGAACTCATGCTTGTATGGCCTATGGGATATAAAATTTACAATCTGTTACATTCTTGAGATAGTTATTGTATATATGTGTGTGCATGTGATTTATAAATAAACATTCAGTTCATTGTTTGTGATACTAATAGTCAGCATGGATCATCTACTATCCTAGCCATTTAAAAGATGATTTCATTATATAAAATGCTTAGTGCTTAATCTTTCAATAGAGTTCCATCCTTGTAGAAATATTTTATTTAAGATTTTCTCGATATATATGATTAAATTAATCATCAATTGCACCGATTAGCATGTTTTCATATTTTCCATCAGTTGCTCCATCGTAGGTACTGGCCATTTGAAGATAAACATTTTTAGTTATGCAATCCTCATTACTCCGGTTTCGTTAATCATCCCCTCTGTATATCTTTTCCTCACACTCCTATCTTTGTTGTGTTTTCAGATTGTCATGAGATACTATGGGCGAAGGGAGATATCTGAAGAAGATTTGGAAAGGGCTCTGCTCGTTGGCATGAGTCCTCATGAGAGAAGACGACTCCAGAAGAAAAAGGGTCTGGCTTTCAAACACTCAGCACATAGTGTTTTTCCAGATGCTGAGCATCAAAATGGTGCTTGTAACATTGACACGTCCACTGTGGTCAATTCATCAGTTGGTATGTGTAGAGTAGTTCACTTTTTGCTACACGCAGTTCACAAAAGATAAAATGTTATTAATATGTTATTAACAGAGTGTGGAAAATCAGTGCTTCAAGCAGTCATTCTTTCTTTTCTAATTCAAGGCTTGATGGCGATGCTAATGCAGATGCCAACAATCACACGAACTCAGATAGTGGTAGCGTGTCTGAAACATGTCTGCCTGGTGGGGAGGTCAGCTTTTCTGATAATGGCTATGCTAAAACTTCTCAACCGAAATTCAATCCAAAATTATCACTCTTGGGACATGGACCACATGGTAAACTAGTTGTGGATCATCTACTGAGGGAATATGGCGAGGATGGAATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAGCCTCGTTTCTTACCCGCTGGTTGGGATGTCAATCACAGGTACACTGAATTACTTAATTTAACTATAAACTTCAAAATGAGAGCTCATATCGACCGTCTCTTTTATCGTATAGTTTCTTATCTCATCTAAAAGACGATTATCATTTCCTAATGTTACCATGTACGTGGTTGTATTATTCCAGTCCCCAAGTACACTTAGGGGGTGTTTGGGGAAAGAAGTGGAGTTGTGAAGTTTAGAGAGCTGTTTAGTCGTGGGGCACCCACTGTAAGGAGTTACTAAGACATAAAATTGAAGTTTTATAGTTGTGGACTCACAAACTCGTTGGGCCAATTCTCCCAACTCCAACTCCAACTCCTTGGCCCAAACACCCCCTTGAGTGTGGAATGTAGTTAGAAATAAATCTTTTCTCATACACTGCCTTCATATTTTACAATGATGATGATAAAGATAAAAGAATGTAAGTTAAGCTGTTGAGATTTGATAAAAAAGAGGAGGTTGCTTTTATCCCGTTGTTGTTGCTTTACCTTTAGGGAATCAAATTCATATAGTAAGTTGTTTTACTTAAACCTTTGTTTCTTGCCTGGTTTCTCTTGACATCTTGTTTTGGATAGGTTCCACAGACCTGCTTGCAGATCTATATTAATTATCATTTGAGCTCTTTTGACCATGGAAATCAACGACTGTACAACATGAATACTTACAACTATGGTTTTATTTCTTAATTGCCAGTGCTTCAAATCATACTTTAAACCGTATATTTAATAAATATTGATATAAATTTCACCGCATTGTTGACTAAGCATGAAAAGGTGGAGACAATTGTTGTGAATGATTTCTCCTCGTGCTTAATCTTTAAAGTTGTTATGTTCAGATTGTCATGACATGAGTGGAATGGTCTGATTTGTAGACACTCAAAAATTTTCTGTTTCTCATTCCAGTGGTAGAAGGGACTTCGGCGAATTCAGTTTGTACAATCCTAAAAAGAAAGCTTCCCCTGCTAATGAGTAG

mRNA sequence

ATGGAACTTCAACACAAGGTCAAAATCGCTCTAGTTGTAGCGTCTTTCGCAGCGCTTACGATCTTATTTACAGCCAGACGGCGCAGGAAGCGAAGGAGCGTTCGTAGTTCGTGTTATTTACGAGATGACCAGAAGCCTCAGTACGCATTTAAACGTGTATTGGCCGAAAATTCTTATTCTGCGTTCAAGCACTTGAAGCGCAATATGAATAAAGATAATGATGTAAACTCGCATCCCTACGAGTCAGAAATACTATCATTGCTAGAAAATTCTTCGTCTGAATTCGATTTTATTAGTGAAGGAACAGATTTAACTTTGAGTGACACTTATGTTTGGGTTGAGACCGAGTCCCAGTTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCTTTAATACAGCAGATTTCTACACACGAGGAAGATTATTTGGTCGACACTATAGCTCTACACGATTCAATGAATCTTCTACGTCCTGTCTTTGCCAATAGTCGTATTTGCAAGGTGTTTCATGGCGCTGATAATGACATTCTATGGTTACAAAGGGACTTTCATATATATGTTGTCAATTTATTTGATACTGCAAAGGCATGTGAAGTGTTATCAAAACCTCAGAAGTCATTGGCCTACTTACTTGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACAACGGCCCCTATCTGCAGATATGGTGCAATATGCTAGGACAGATGCCCACTATCTCCTATATATTGCGAACTGTTTACTCTCTGAGCTGAAACAAGTTAATGAAAACTCTTCCACCGATGATAAATTCAATTTTCTTCTCGAGGCTAGTCGGCGATCAAACATGACTTCTTTGCAACTCTATTCAAAAGAGACTGATGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCCCGTTATTTAAACGGTCAAGGTGGTAGTACACTAATTTCCTGTAAAACTCAGTTTCAGGATTATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGCCCGAGTTCATGATGAGAGCCTGAGATATGTCTTGTCAGATCAGGCTATAGTAGTTCTTGCAAATCAAGTGTCAAAAAATACGGGGGAGTTATATGCAACTATAGCACAAGCTGATTTGAATGTGGATTTGAGTTCCAGTCTGTTTCTTCCATCTCCCTCCCCTGTTGTTTGCAGCCACTTGGATGATATCCACCATCTCCTCCATGACAAGTCTCGCAACCTTGATAATATTTTTTTGGTGATTTTACAGAACTGCATAGGTTCTGATGGTAGCTGCCCCCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGACAATATCTAAACATAATGATAGAAAGAATGCAAAGCAAATATCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTTTCCTGCAAGTCTCCAGTTTACCATAATTTTAGGATTTATGCAAATGATGGACGCTTGCTTTGCTACTGTGATCGGCGAAAACTCGAATGGTACTTGCGCCGAGAGTTGGCAGAGCTTGTTGCTGATGATCCTCCTGCCATAAAGCTTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCACTATTTACGCTATCGAATTATCCCCTCATGCTACAGAATACACTTTCCTGAGCATTTAAAAAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGCCATGAAGCTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGAGCTTGCTGCAGAATTTGGAATTCCTCTTTTTGTTCGTAGAGTGGTTGATGCTAAGGAAGCCTTTGATATGGCTGAGCCATCTGACTCGGGAACCAATGTTCAGGAGGAAGGCGTGTCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTGTTGAGGCATGGACCAAGAATGCCATCAAAGCGTCAAGAGGAACTCATGCTTATTGTCATGAGATACTATGGGCGAAGGGAGATATCTGAAGAAGATTTGGAAAGGGCTCTGCTCGTTGGCATGAGTCCTCATGAGAGAAGACGACTCCAGAAGAAAAAGGGTCTGGCTTTCAAACACTCAGCACATAGTGTTTTTCCAGATGCTGAGCATCAAAATGGTGCTTGTAACATTGACACGTCCACTGTGGTCAATTCATCAGTTGATGCCAACAATCACACGAACTCAGATAGTGGTAGCGTGTCTGAAACATGTCTGCCTGGTGGGGAGGTCAGCTTTTCTGATAATGGCTATGCTAAAACTTCTCAACCGAAATTCAATCCAAAATTATCACTCTTGGGACATGGACCACATGGTAAACTAGTTGTGGATCATCTACTGAGGGAATATGGCGAGGATGGAATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAGCCTCGTTTCTTACCCGCTGGTTGGGATGTCAATCACAGTGGTAGAAGGGACTTCGGCGAATTCAGTTTGTACAATCCTAAAAAGAAAGCTTCCCCTGCTAATGAGTAG

Coding sequence (CDS)

ATGGAACTTCAACACAAGGTCAAAATCGCTCTAGTTGTAGCGTCTTTCGCAGCGCTTACGATCTTATTTACAGCCAGACGGCGCAGGAAGCGAAGGAGCGTTCGTAGTTCGTGTTATTTACGAGATGACCAGAAGCCTCAGTACGCATTTAAACGTGTATTGGCCGAAAATTCTTATTCTGCGTTCAAGCACTTGAAGCGCAATATGAATAAAGATAATGATGTAAACTCGCATCCCTACGAGTCAGAAATACTATCATTGCTAGAAAATTCTTCGTCTGAATTCGATTTTATTAGTGAAGGAACAGATTTAACTTTGAGTGACACTTATGTTTGGGTTGAGACCGAGTCCCAGTTGGAAGAACTCGTGGATGTGTTGAATAAAGAAATGGTGTTTGCTGTTGATACCGAGCAGCACAGTCTAAGATCCTTTCTGGGTTTCACTGCTTTAATACAGCAGATTTCTACACACGAGGAAGATTATTTGGTCGACACTATAGCTCTACACGATTCAATGAATCTTCTACGTCCTGTCTTTGCCAATAGTCGTATTTGCAAGGTGTTTCATGGCGCTGATAATGACATTCTATGGTTACAAAGGGACTTTCATATATATGTTGTCAATTTATTTGATACTGCAAAGGCATGTGAAGTGTTATCAAAACCTCAGAAGTCATTGGCCTACTTACTTGAAACTTATTGTGGGGTAGCTACGAACAAAATGTTGCAGCGAGAAGATTGGAGACAACGGCCCCTATCTGCAGATATGGTGCAATATGCTAGGACAGATGCCCACTATCTCCTATATATTGCGAACTGTTTACTCTCTGAGCTGAAACAAGTTAATGAAAACTCTTCCACCGATGATAAATTCAATTTTCTTCTCGAGGCTAGTCGGCGATCAAACATGACTTCTTTGCAACTCTATTCAAAAGAGACTGATGGTTCTCCTGGAGAGTCTGCTGCATCATCAATATCTTCCCGTTATTTAAACGGTCAAGGTGGTAGTACACTAATTTCCTGTAAAACTCAGTTTCAGGATTATGTGAGGAGATTATGTGCTTGGCGAGACTTAATGGCCCGAGTTCATGATGAGAGCCTGAGATATGTCTTGTCAGATCAGGCTATAGTAGTTCTTGCAAATCAAGTGTCAAAAAATACGGGGGAGTTATATGCAACTATAGCACAAGCTGATTTGAATGTGGATTTGAGTTCCAGTCTGTTTCTTCCATCTCCCTCCCCTGTTGTTTGCAGCCACTTGGATGATATCCACCATCTCCTCCATGACAAGTCTCGCAACCTTGATAATATTTTTTTGGTGATTTTACAGAACTGCATAGGTTCTGATGGTAGCTGCCCCCTTTCTATATTTAATTATGCACTATTGGTTAAGTATAATCTAAAAATGATGACAATATCTAAACATAATGATAGAAAGAATGCAAAGCAAATATCTAAAAAAGCTTCTAGAGAGCTTTTTGTGCAGAAGTTTTCCTGCAAGTCTCCAGTTTACCATAATTTTAGGATTTATGCAAATGATGGACGCTTGCTTTGCTACTGTGATCGGCGAAAACTCGAATGGTACTTGCGCCGAGAGTTGGCAGAGCTTGTTGCTGATGATCCTCCTGCCATAAAGCTTCTTTTTGAACCTAAAGGCCGTCCAGAAGATGAGGGCAATGACTTCTATATCCAGAGTAAAAAAAATATATGTGTTGGCTGTGGTGAAGGAAACCACTATTTACGCTATCGAATTATCCCCTCATGCTACAGAATACACTTTCCTGAGCATTTAAAAAGTCATCGTTCTCATGATATTGTCCTACTCTGTGTGGACTGCCATGAAGCTGCCCATGCTGCTGCTGAGAAGCACAAGAGAGAGCTTGCTGCAGAATTTGGAATTCCTCTTTTTGTTCGTAGAGTGGTTGATGCTAAGGAAGCCTTTGATATGGCTGAGCCATCTGACTCGGGAACCAATGTTCAGGAGGAAGGCGTGTCACCTTTAGAATTGAGAACAGCTGCTATGGCCCTGTTGAGGCATGGACCAAGAATGCCATCAAAGCGTCAAGAGGAACTCATGCTTATTGTCATGAGATACTATGGGCGAAGGGAGATATCTGAAGAAGATTTGGAAAGGGCTCTGCTCGTTGGCATGAGTCCTCATGAGAGAAGACGACTCCAGAAGAAAAAGGGTCTGGCTTTCAAACACTCAGCACATAGTGTTTTTCCAGATGCTGAGCATCAAAATGGTGCTTGTAACATTGACACGTCCACTGTGGTCAATTCATCAGTTGATGCCAACAATCACACGAACTCAGATAGTGGTAGCGTGTCTGAAACATGTCTGCCTGGTGGGGAGGTCAGCTTTTCTGATAATGGCTATGCTAAAACTTCTCAACCGAAATTCAATCCAAAATTATCACTCTTGGGACATGGACCACATGGTAAACTAGTTGTGGATCATCTACTGAGGGAATATGGCGAGGATGGAATCCGACAGTTTTGTCAAAGGTGGAGACAAGTGTTTGTTGCTGCTATTCAGCCTCGTTTCTTACCCGCTGGTTGGGATGTCAATCACAGTGGTAGAAGGGACTTCGGCGAATTCAGTTTGTACAATCCTAAAAAGAAAGCTTCCCCTGCTAATGAGTAG

Protein sequence

MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLRDDQKPQYAFKRVLAENSYSAFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSHLDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDMAEPSDSGTNVQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSETCLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE

Homology

[Close]

BLAST of HG10005400 vs. NCBI nr
Match: XP_038887745.1 (protein RRP6-like 3 [Benincasa hispida] >XP_038887746.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887747.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887748.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887749.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887750.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887751.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887752.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887753.1 protein RRP6-like 3 [Benincasa hispida] >XP_038887754.1 protein RRP6-like 3 [Benincasa hispida])

HSP 1 Score: 1636.3 bits (4236), Expect = 0.0e+00
Identity = 823/881 (93.42%), Postives = 848/881 (96.25%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLRDDQKPQYAFKRVLAENSYS 60
           MELQHK+KIALVVASFAALTILFTA RRRKRRSVR+SCYLRDDQKPQYAFK VLA+NSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTAGRRRKRRSVRTSCYLRDDQKPQYAFKCVLADNSYS 60

Query: 61  AFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQLE 120
            FKHLK N NKD DVNSHPYESEILSLLENS  EFDFISE TDLTLSDTYVWVETESQLE
Sbjct: 61  QFKHLKLNPNKDLDVNSHPYESEILSLLENSKPEFDFISERTDLTLSDTYVWVETESQLE 120

Query: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFA 180
           EL+DVLNKE VFAVDTEQHSLRSFLGFTALI QIST +EDYLVDTIALHDSM+LLRP+FA
Sbjct: 121 ELLDVLNKETVFAVDTEQHSLRSFLGFTALI-QISTPKEDYLVDTIALHDSMSLLRPIFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPL ADMVQYARTDAHYLLYIANCLLSELKQVNEN+STDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLPADMVQYARTDAHYLLYIANCLLSELKQVNENTSTDDKFNFLLEASRR 300

Query: 301 SNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLMA 360
           SNMT LQLYSKET+GSPGESAASSISSR+LN QGGS L+SCKTQFQD+VRRLCAWRDLMA
Sbjct: 301 SNMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSMLVSCKTQFQDHVRRLCAWRDLMA 360

Query: 361 RVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSHL 420
           RVHDE+LRYVLSDQAIV LANQVSKNTGELYATIAQADLNVDLSSSL+LPSPSPVVCSHL
Sbjct: 361 RVHDENLRYVLSDQAIVALANQVSKNTGELYATIAQADLNVDLSSSLYLPSPSPVVCSHL 420

Query: 421 DDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480
           DDIH LLHDKS +LD+IFL ILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISK +DRKN
Sbjct: 421 DDIHCLLHDKSGDLDDIFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKQSDRKN 480

Query: 481 AKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540
           AKQISKKASRELFVQKFSCKSPVYHN RIYANDGRLLCYCDRRKLEWYLRRELAEL+ADD
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELIADD 540

Query: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600
           PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH
Sbjct: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600

Query: 601 RSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDMAEPSDSGTNVQ 660
           RSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVD KEAFDMAEPSDSGT+VQ
Sbjct: 601 RSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAEPSDSGTDVQ 660

Query: 661 EEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSPH 720
           EEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLE+ALLVGMSPH
Sbjct: 661 EEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLEKALLVGMSPH 720

Query: 721 ERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSETC 780
           E+RRLQKKKGLA KHSA SVFP AEHQNG CNIDTSTVVNSSVD  NH N+DSGSVSETC
Sbjct: 721 EKRRLQKKKGLALKHSAQSVFPAAEHQNGGCNIDTSTVVNSSVDVKNHMNADSGSVSETC 780

Query: 781 LPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQV 840
           LPGGEVSFSD+GYAKT QPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQV
Sbjct: 781 LPGGEVSFSDDGYAKTVQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQV 840

Query: 841 FVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 882
           FVAAIQPRFLPAGWDVNHSG+RDFGEFSLYNP KKAS ANE
Sbjct: 841 FVAAIQPRFLPAGWDVNHSGKRDFGEFSLYNPIKKASLANE 880

[Close]

BLAST of HG10005400 vs. NCBI nr
Match: XP_011658699.1 (protein RRP6-like 3 isoform X1 [Cucumis sativus] >KGN43518.1 hypothetical protein Csa_020572 [Cucumis sativus])

HSP 1 Score: 1632.1 bits (4225), Expect = 0.0e+00
Identity = 824/882 (93.42%), Postives = 843/882 (95.58%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLRDDQKPQYAFKRVLAENSYS 60
           MELQHK+KIALVVASFAALTILFTARRRRKRRSV +SCYLRDDQKPQYAFKRVLA+NSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTARRRRKRRSVSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQLE 120
           AFKHLK NMNKDNDVNSHPYESEILSLLENSS EF+FISE TDLTLSDTY WVET SQLE
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPEFNFISERTDLTLSDTYAWVETVSQLE 120

Query: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFA 180
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QISTH+EDYLVDTIALHDSMNLLRPVFA
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPL ADMVQYARTDAHYLLYIANCLL ELKQVNENSSTDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLPADMVQYARTDAHYLLYIANCLLVELKQVNENSSTDDKFNFLLEASRR 300

Query: 301 SNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLMA 360
           SNMT LQLYSKET+GSPGESAASSI SR+LN QGGS LISCKTQFQD VRRLCAWRDLMA
Sbjct: 301 SNMTCLQLYSKETEGSPGESAASSIWSRHLNSQGGSALISCKTQFQDRVRRLCAWRDLMA 360

Query: 361 RVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSHL 420
           RVHDESLRYVLSDQAIV +A QV KNTGELYATIAQ DLNVDLSSSLFLPSPS VVCSHL
Sbjct: 361 RVHDESLRYVLSDQAIVAIAIQVPKNTGELYATIAQVDLNVDLSSSLFLPSPSSVVCSHL 420

Query: 421 DDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480
           DDIH LLHD   +LDNIFLVILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISKHNDRKN
Sbjct: 421 DDIHCLLHDNFGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480

Query: 481 AKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540
           AKQISKKASRELFVQKFSCKSPVYHN RIYANDGRLLCYCDRRKLEWYLRRELAELVADD
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540

Query: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600
           PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYR+HFPEHLKSH
Sbjct: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRVHFPEHLKSH 600

Query: 601 RSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDM-AEPSDSGTNV 660
           RSHDIVLLCVDCHE AHAAAEK+KRELAAEFGIPLFVRRVVD KEAFDM AEPSDS TNV
Sbjct: 601 RSHDIVLLCVDCHETAHAAAEKYKRELAAEFGIPLFVRRVVDTKEAFDMAAEPSDSETNV 660

Query: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSP 720
           QEEGVSPLELRTAAMALLRHGPRMP KRQEELM +VM+YYGRREISEEDLERALLVGMSP
Sbjct: 661 QEEGVSPLELRTAAMALLRHGPRMPLKRQEELMFVVMKYYGRREISEEDLERALLVGMSP 720

Query: 721 HERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSET 780
           HERRRLQKKKGLAFKHS  SVFPDAE QNGACNIDTSTV +SSVD NNH NSDSGSVSET
Sbjct: 721 HERRRLQKKKGLAFKHSPQSVFPDAERQNGACNIDTSTVDSSSVDVNNHMNSDSGSVSET 780

Query: 781 CLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQ 840
           C+PGGEVSFSDNGYAKT+QPKFN KLSLLGHGPHGKLVVD+LL+EYGEDGIRQFCQRWRQ
Sbjct: 781 CVPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDYLLKEYGEDGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 882
           VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKA P NE
Sbjct: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKAFPDNE 881

[Close]

BLAST of HG10005400 vs. NCBI nr
Match: XP_008455438.1 (PREDICTED: protein RRP6-like 3 isoform X1 [Cucumis melo])

HSP 1 Score: 1620.1 bits (4194), Expect = 0.0e+00
Identity = 820/882 (92.97%), Postives = 838/882 (95.01%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLRDDQKPQYAFKRVLAENSYS 60
           MELQHKVKIALVVASFAALTILFTARRRRKRRS  +SCYLRDDQKPQYAFKRVLA+NSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQLE 120
           AFKHLK NMNKDNDVNSHPYESEILSLLENSS E +FISE TDLTLSDTY WVETESQLE
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFISERTDLTLSDTYAWVETESQLE 120

Query: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFA 180
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QISTH+EDYLVDTIALHDSMNLLRPVFA
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           N  ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC VATNK
Sbjct: 181 NRSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLL ELKQVNENSSTDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFLLEASRR 300

Query: 301 SNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLMA 360
           SNMT LQLYSKET+GSPGESAASSISSR+LN QGGS LISCKTQFQD VRRLCAWRDLMA
Sbjct: 301 SNMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSALISCKTQFQDRVRRLCAWRDLMA 360

Query: 361 RVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSHL 420
           RVHDESLRYVLSDQAI+ +A QV K+TGELYATIAQADLNVDLSSS FLPSPS VVCSHL
Sbjct: 361 RVHDESLRYVLSDQAILAIAIQVPKSTGELYATIAQADLNVDLSSSPFLPSPSSVVCSHL 420

Query: 421 DDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480
           DDIH LLHD   +LD  FL ILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISKHNDRKN
Sbjct: 421 DDIHCLLHDNFGDLDRFFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480

Query: 481 AKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540
           AKQISKKASRELFVQKFSCKSPVYHN RIYANDGRLLCYCDRRKLEWYLRRELAELVADD
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540

Query: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600
           PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH
Sbjct: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600

Query: 601 RSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDM-AEPSDSGTNV 660
           RSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVD KEAFDM AEPSDS TNV
Sbjct: 601 RSHDIVLLCVDCHETAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAAEPSDSETNV 660

Query: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSP 720
            EEGVSPLELRTAAMALLRHGPRMP KRQEELML+VM+YYGRREISEEDLERALLVGMSP
Sbjct: 661 HEEGVSPLELRTAAMALLRHGPRMPLKRQEELMLVVMKYYGRREISEEDLERALLVGMSP 720

Query: 721 HERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSET 780
           HERRR+QKKKGLAFKHS  SVFPDAEHQNGACNIDTSTV NSSVD NNH NSDSGSVS+T
Sbjct: 721 HERRRVQKKKGLAFKHSPQSVFPDAEHQNGACNIDTSTVDNSSVDVNNHMNSDSGSVSDT 780

Query: 781 CLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQ 840
           C PGGEVSFSDNGYAKT+QPKFN KLSLLGHGPHGKLVVD+LL+EY EDGIRQFCQRWRQ
Sbjct: 781 CGPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDYLLKEYHEDGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 882
           VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE
Sbjct: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 881

[Close]

BLAST of HG10005400 vs. NCBI nr
Match: XP_022135803.1 (protein RRP6-like 3 isoform X1 [Momordica charantia])

HSP 1 Score: 1594.3 bits (4127), Expect = 0.0e+00
Identity = 800/882 (90.70%), Postives = 834/882 (94.56%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLR-DDQKPQYAFKRVLAENSY 60
           MEL+HKVKI L VASFAALTILFTARRRRK++SVRSSCYLR DDQK QY FKRVLA+NSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 61  SAFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQL 120
           S FKHLK NMN DNDVNSHPYESEILSLLENS  E+DF+SE  D T SD YVWVETESQL
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFVSERKDFTSSDAYVWVETESQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVF 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QIST +EDYLVD IALHDSMNLLRP+F
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTRKEDYLVDAIALHDSMNLLRPIF 180

Query: 181 ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATN 240
           ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGVATN
Sbjct: 181 ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATN 240

Query: 241 KMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASR 300
           KMLQREDWRQRPLSA+MVQYARTDAHYLL+IANCLLSELKQVNENSSTDDKFNFLLEASR
Sbjct: 241 KMLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVNENSSTDDKFNFLLEASR 300

Query: 301 RSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLM 360
           RSNM  LQLY+KET+GSPGESAASSISSR LN QG ST+ISCKTQFQD VRRLCAWRDLM
Sbjct: 301 RSNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDLM 360

Query: 361 ARVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSH 420
           ARVHDESLRYVLSDQAIV LAN+V KNT ELYATIAQADL+VDLS SLFLPSPSPVVCSH
Sbjct: 361 ARVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCSH 420

Query: 421 LDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRK 480
           LDD+H LLHDKS +LDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHN RK
Sbjct: 421 LDDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHRK 480

Query: 481 NAKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVAD 540
           NAKQISKKASRELFVQKFSCKSPVYHN RIYANDGRLLCYCDRRKLEWY+RRELAELV D
Sbjct: 481 NAKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYVRRELAELVDD 540

Query: 541 DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS 600
           DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS
Sbjct: 541 DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS 600

Query: 601 HRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDMAEPSDSGTNV 660
           HRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVD KEAF++AEPSDSGTN 
Sbjct: 601 HRSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAEPSDSGTNF 660

Query: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSP 720
           QEEGVSPLELRTAAMALLRHGPRMPSKRQEELML VMRYYGRREISEEDLERALLVGMSP
Sbjct: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLERALLVGMSP 720

Query: 721 HERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSET 780
           HERRRLQKK+G+A KHSA S FP+AEHQNGAC+IDTST VNSSVD N+HTNSDSGSVS+ 
Sbjct: 721 HERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSVDINSHTNSDSGSVSDK 780

Query: 781 CLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQ 840
           CLPGG+V FSDNG A+T+QPKFNPKLSLLGHGPHGK VVDHLLREYGE+GIRQFCQRWRQ
Sbjct: 781 CLPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 882
           VFVAA +PRFLPAGWDVNHSGRRDFGEFS+YNP KKASP+NE
Sbjct: 841 VFVAATKPRFLPAGWDVNHSGRRDFGEFSVYNPIKKASPSNE 881

[Close]

BLAST of HG10005400 vs. NCBI nr
Match: KAA0040242.1 (protein RRP6-like 3 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1558.1 bits (4033), Expect = 0.0e+00
Identity = 800/908 (88.11%), Postives = 826/908 (90.97%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLRDDQKPQYAFKRVLAENSYS 60
           MELQHKVKIALVVASFAALTILFTARRRRKRRS  +SCYLRDDQKPQYAFKRVLA+NSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQLE 120
           AFKHLK NMNKDNDVNSHPYESEILSLLENSS E +FISE TDLTLSDTY WVETESQL+
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFISERTDLTLSDTYAWVETESQLK 120

Query: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFA 180
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QISTH+EDYLVDTIALHDSMNLLRPVFA
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           N  ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC VATNK
Sbjct: 181 NRSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLL ELKQVNENSSTDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFLLEASRR 300

Query: 301 SNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKT----------------- 360
           SNMT LQLYSKET+GSPGESAASSISSR+LN QGGS LISCKT                 
Sbjct: 301 SNMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSALISCKTQVSCPPDDFDGVTFEAV 360

Query: 361 ---------QFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVLANQVSKNTGELYATI 420
                    QFQD VRRLCAWRDLMARVHDESLRYVLSDQAI+ +A QV K+TGELYATI
Sbjct: 361 SYTNLCFLIQFQDRVRRLCAWRDLMARVHDESLRYVLSDQAILAIAIQVPKSTGELYATI 420

Query: 421 AQADLNVDLSSSLFLPSPSPVVCSHLDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPL 480
           AQADLNVDLSSS FLPSPS VVCSHLDDIH LLH+   +LD  FL ILQNCIGS+GSCPL
Sbjct: 421 AQADLNVDLSSSPFLPSPSSVVCSHLDDIHCLLHNNFGDLDKFFLGILQNCIGSNGSCPL 480

Query: 481 SIFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHNFRIYANDG 540
           SIFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHN RIYANDG
Sbjct: 481 SIFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHNCRIYANDG 540

Query: 541 RLLCYCDRRKLEWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCG 600
           RLLCYCDRRKLEWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCG
Sbjct: 541 RLLCYCDRRKLEWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCG 600

Query: 601 EGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIP 660
           EGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIP
Sbjct: 601 EGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHETAHAAAEKHKRELAAEFGIP 660

Query: 661 LFVRRVVDAKEAFDM-AEPSDSGTNVQEEGVSPLELRTAAMALLRHGPRMPSKRQEELML 720
           LFVRRVVD KEAFDM AEPSDS TNV EEGVSPLELRTAAMALLRHGPRMP KRQEELML
Sbjct: 661 LFVRRVVDTKEAFDMAAEPSDSETNVHEEGVSPLELRTAAMALLRHGPRMPLKRQEELML 720

Query: 721 IVMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNI 780
           +VM+YYGRREISEEDLERALLVGMSPHERRR+QKKKGLAFKHS  SVFPDAEHQNGACNI
Sbjct: 721 VVMKYYGRREISEEDLERALLVGMSPHERRRVQKKKGLAFKHSPQSVFPDAEHQNGACNI 780

Query: 781 DTSTVVNSSVDANNHTNSDSGSVSETCLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPH 840
           DTSTV NSSVD NNH NSDSGSVS+TC PGGEVSFSDNGYAKT+QPKFN KLSLLGHGPH
Sbjct: 781 DTSTVDNSSVDVNNHMNSDSGSVSDTCGPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPH 840

Query: 841 GKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPK 882
           GKLVVD+LL+EY EDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNH   +++   SL   +
Sbjct: 841 GKLVVDYLLKEYHEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHRPNKEW--ISLICVR 900

[Close]

BLAST of HG10005400 vs. ExPASy Swiss-Prot
Match: A9LLI8 (Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1)

HSP 1 Score: 1103.2 bits (2852), Expect = 0.0e+00
Identity = 573/907 (63.18%), Postives = 698/907 (76.96%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTA-----RRRRKRRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL+ K K+ + VAS  A+TILF       R+RRK+ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  ENSYSAFKHLK----RNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYV 120
           +NSYS FKHLK     + + +   N HPYE+EI  LLEN   EF F+     L +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 121 WVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDS 180
           WVETESQL+EL ++L KE VFAVDTEQHSLRSFLGFTALI QISTHEED+LVDTIALHD 
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALI-QISTHEEDFLVDTIALHDV 180

Query: 181 MNLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           M++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV--NENSSTDD 300
           T CGVATNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L +ELKQ+   ++SS DD
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSSPDD 300

Query: 301 KFNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYV 360
           +F+FLLEASRRSNMT LQLY+KET+  PG +A+SSI  R+LNG G  + IS     ++ V
Sbjct: 301 RFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNA--EELV 360

Query: 361 RRLCAWRDLMARVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSL-- 420
           R+LCAWRDLM R+HDES RYVLSDQAIV L+ +    T E+Y TIA  DL  + S SL  
Sbjct: 361 RKLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSS 420

Query: 421 FLPSPSPVVCSHLDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNL 480
            + SP PV+CSHLDDI+ ++ DK   LD++  V+L+ C+G++G+CP+S+FNY+LLV +  
Sbjct: 421 SVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKT 480

Query: 481 KMMTIS--KHNDRKNAK-QISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRK 540
           K+ + S  K N  KN K Q ++KASRELFV+KFSCK+PVYHN RIYANDGRLLCYCD+RK
Sbjct: 481 KLSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRK 540

Query: 541 LEWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRI 600
           LEWYL R LA+LV ++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRI
Sbjct: 541 LEWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRI 600

Query: 601 IPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAK 660
           IPSCYR+HFPEHLKSHRSHDIVLLCVDCHE AHAAAE++K+++A EFGIPLFVRRV+D+K
Sbjct: 601 IPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSK 660

Query: 661 EA---FDMAEPSDSGTNVQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGR 720
           EA     + E   +G + ++ GVSPL LR+AAMALLRHG RMPS R+EEL+  V  YYG 
Sbjct: 661 EAQGTSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGG 720

Query: 721 REISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAHSVFPDA---EHQNGAC------- 780
           R++SEEDLE+ALL+G+SPHERR+L++KKG++FKHSA     D    E+ +G         
Sbjct: 721 RDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGEALADFEKI 780

Query: 781 -NIDTSTVVNSSVDANNHTNSDSGSVSETCLPGGEVSFSDNGYAKTSQPKFNPKLSLLGH 840
             ++ STVV+ S D  +  +         C          NG     Q   N KLSLLGH
Sbjct: 781 MTVERSTVVDDSGDGTSEGDGAKELNDTQC----------NGNTLHQQ---NSKLSLLGH 840

Query: 841 GPHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLY 878
           GPHGK +V++LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+HSGRRDFGEFS+Y
Sbjct: 841 GPHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVY 890

[Close]

BLAST of HG10005400 vs. ExPASy Swiss-Prot
Match: A9LLI7 (Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 7.7e-49
Identity = 133/350 (38.00%), Postives = 190/350 (54.29%), Query Frame = 0


Query: 44  QKPQYAFKRVLAENSYSAFKHLKRNMNKDNDVNSHPYES-EILSLLENSSSEFDFISEGT 103
           +KPQ  +  +L  N+   F+H+    ++D+    HP E   +L  ++   +E + +    
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVK--- 255

Query: 104 DLTLSDT-YVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDY 163
            L L  T + +V+    L+ELV  L     FAVD E +  RSF G T L+ QIST  EDY
Sbjct: 256 PLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLM-QISTRTEDY 315

Query: 164 LVDTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLS 223
           +VDT  L   +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL+
Sbjct: 316 IVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN 375

Query: 224 KPQKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQ 283
             + SL +LL+ +CGV  NK  Q  DWR RPL  +M +YAR D HYLLYI + +  EL++
Sbjct: 376 LERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQR 435

Query: 284 VNENSSTDDKFNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLIS 343
           + ++ +  D  + LLE  +RS     QLY KE              + YL+  G      
Sbjct: 436 MAKDDAHTD--SPLLEVYKRSYDVCTQLYEKEL----------LTENSYLHVYGLQAAGF 495

Query: 344 CKTQFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVLANQVSKNTGEL 391
              Q    V  LC WRD +AR  DES  YVL ++ ++ +A ++  + G+L
Sbjct: 496 NAAQLA-IVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKL 527

[Close]

BLAST of HG10005400 vs. ExPASy Swiss-Prot
Match: Q0WVE8 (Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.2e-47
Identity = 133/342 (38.89%), Postives = 182/342 (53.22%), Query Frame = 0


Query: 45  KPQYAFKRVLAENSYSAFKHLKRNMNKDNDVNSHPYES-EILSLLENSSSEFDFISEGTD 104
           KPQ  +K +L +N+ + F+H+    ++D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVK---P 111

Query: 105 LTLSDT-YVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYL 164
           L L +T +  VE    LE+L   L     FAVD E +  R+F G T L+ QIST  EDY+
Sbjct: 112 LPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLM-QISTRTEDYI 171

Query: 165 VDTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSK 224
           VD   L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL  
Sbjct: 172 VDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKL 231

Query: 225 PQKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV 284
            + SL +LL+ YCGVA NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  +
Sbjct: 232 ERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTM 291

Query: 285 NENSSTDDKFNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISC 344
            +     D  + L+E  +RS    +QLY KE                YL+  G  T    
Sbjct: 292 AKEDEQSD--SPLVEVYKRSYDVCMQLYEKEL----------WTRDSYLHVYGVQTGNLN 351

Query: 345 KTQFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVLANQV 384
             Q    V  LC WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 AVQL-SIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]

BLAST of HG10005400 vs. ExPASy Swiss-Prot
Match: Q10146 (Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp6 PE=3 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 8.0e-46
Identity = 124/324 (38.27%), Postives = 169/324 (52.16%), Query Frame = 0


Query: 78  HPYESEILSLLENSSSEFDFISE-----GTDLTLSDTYVWVETESQLEELVDVLNKEMVF 137
           HPYE EI      +S    ++SE      T        +WV TESQL +++  L      
Sbjct: 186 HPYEPEI-----QNSVYPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEI 245

Query: 138 AVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFANSRICKVFHGAD 197
           AVD E H  RSF GF  L+ QIS  E+D++VDT+ L + +  L  VF N  I KVFHGA 
Sbjct: 246 AVDLEHHDYRSFRGFVCLM-QISNREKDWIVDTLELREELEALNVVFTNPNIIKVFHGAT 305

Query: 198 NDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPL 257
            DI+WLQRDF +YVVNLFDT  A +VL      LA+LL+ YC    +K  Q  DWR RPL
Sbjct: 306 MDIIWLQRDFGLYVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADKRYQMADWRIRPL 365

Query: 258 SADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRRSNMTSLQLYSKE 317
             +M++YA++D HYLLYI + L +EL     + S + K N +      S   SL+ Y  E
Sbjct: 366 PREMLKYAQSDTHYLLYIWDHLRNEL----ISKSAERKENLMQSVFNSSKQISLRKYELE 425

Query: 318 TDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLMARVHDESLRYVLS 377
               P     +      L   G S +I  +       R L  WRD +AR  DES+RYVL 
Sbjct: 426 -PYDPIYGLGTDGWRNVLTKFGSSKIIGREALM--IYRALHDWRDSVARKEDESVRYVLP 485

Query: 378 DQAIVVLANQVSKNTGELYATIAQ 397
           ++ ++ +A        ++++   Q
Sbjct: 486 NRLLIAIAASKPVEAADVFSISKQ 496

[Close]

BLAST of HG10005400 vs. ExPASy Swiss-Prot
Match: Q12149 (Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP6 PE=1 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.8e-43
Identity = 135/359 (37.60%), Postives = 183/359 (50.97%), Query Frame = 0


Query: 44  QKPQYAFKRVLAENSYS------------AFKHLKRNMN-KDNDVNS-----HPYESEIL 103
           +KPQ  FK  + +NS S            A K L  ++   D+D N+     HPYE EI 
Sbjct: 130 EKPQLKFKSPI-DNSESHPFIPLLKEKPNALKPLSESLRLVDDDENNPSHYPHPYEYEI- 189

Query: 104 SLLENSSSEFDFISEGTDLTLSDTY-VWVETESQLEELVDVLNKEMVFAVDTEQHSLRSF 163
              E S        E    +  D+  +WV+T ++LE +++ L      AVD E H  RS+
Sbjct: 190 DHQEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSY 249

Query: 164 LGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFANSRICKVFHGADNDILWLQRDFHI 223
            G   L+ QIST E DYLVDT+ L +++++L  VF N  I KVFHGA  DI+WLQRD  +
Sbjct: 250 YGIVCLM-QISTRERDYLVDTLKLRENLHILNEVFTNPSIVKVFHGAFMDIIWLQRDLGL 309

Query: 224 YVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDA 283
           YVV LFDT  A + +  P+ SLAYLLE +    T+K  Q  DWR RPLS  M  YAR D 
Sbjct: 310 YVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAYARADT 369

Query: 284 HYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRRSNMTSLQLYSKETDGSPGESAASS 343
           H+LL I + L ++L + N       K   +L  SR       + YSK    +P     S 
Sbjct: 370 HFLLNIYDQLRNKLIESN-------KLAGVLYESRNVAKRRFE-YSKYRPLTPSSEVYSP 429

Query: 344 ISS----RYLNGQGGSTLISCKTQFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVL 380
           I      + L  Q      +   + +  VR L  WRDL+AR  DES R+V+ +Q +  L
Sbjct: 430 IEKESPWKILMYQ-----YNIPPEREVLVRELYQWRDLIARRDDESPRFVMPNQLLAAL 472

[Close]

BLAST of HG10005400 vs. ExPASy TrEMBL
Match: A0A0A0K254 (HRDC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G043600 PE=4 SV=1)

HSP 1 Score: 1632.1 bits (4225), Expect = 0.0e+00
Identity = 824/882 (93.42%), Postives = 843/882 (95.58%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLRDDQKPQYAFKRVLAENSYS 60
           MELQHK+KIALVVASFAALTILFTARRRRKRRSV +SCYLRDDQKPQYAFKRVLA+NSYS
Sbjct: 1   MELQHKLKIALVVASFAALTILFTARRRRKRRSVSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQLE 120
           AFKHLK NMNKDNDVNSHPYESEILSLLENSS EF+FISE TDLTLSDTY WVET SQLE
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPEFNFISERTDLTLSDTYAWVETVSQLE 120

Query: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFA 180
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QISTH+EDYLVDTIALHDSMNLLRPVFA
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK
Sbjct: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPL ADMVQYARTDAHYLLYIANCLL ELKQVNENSSTDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLPADMVQYARTDAHYLLYIANCLLVELKQVNENSSTDDKFNFLLEASRR 300

Query: 301 SNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLMA 360
           SNMT LQLYSKET+GSPGESAASSI SR+LN QGGS LISCKTQFQD VRRLCAWRDLMA
Sbjct: 301 SNMTCLQLYSKETEGSPGESAASSIWSRHLNSQGGSALISCKTQFQDRVRRLCAWRDLMA 360

Query: 361 RVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSHL 420
           RVHDESLRYVLSDQAIV +A QV KNTGELYATIAQ DLNVDLSSSLFLPSPS VVCSHL
Sbjct: 361 RVHDESLRYVLSDQAIVAIAIQVPKNTGELYATIAQVDLNVDLSSSLFLPSPSSVVCSHL 420

Query: 421 DDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480
           DDIH LLHD   +LDNIFLVILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISKHNDRKN
Sbjct: 421 DDIHCLLHDNFGDLDNIFLVILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480

Query: 481 AKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540
           AKQISKKASRELFVQKFSCKSPVYHN RIYANDGRLLCYCDRRKLEWYLRRELAELVADD
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540

Query: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600
           PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYR+HFPEHLKSH
Sbjct: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRVHFPEHLKSH 600

Query: 601 RSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDM-AEPSDSGTNV 660
           RSHDIVLLCVDCHE AHAAAEK+KRELAAEFGIPLFVRRVVD KEAFDM AEPSDS TNV
Sbjct: 601 RSHDIVLLCVDCHETAHAAAEKYKRELAAEFGIPLFVRRVVDTKEAFDMAAEPSDSETNV 660

Query: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSP 720
           QEEGVSPLELRTAAMALLRHGPRMP KRQEELM +VM+YYGRREISEEDLERALLVGMSP
Sbjct: 661 QEEGVSPLELRTAAMALLRHGPRMPLKRQEELMFVVMKYYGRREISEEDLERALLVGMSP 720

Query: 721 HERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSET 780
           HERRRLQKKKGLAFKHS  SVFPDAE QNGACNIDTSTV +SSVD NNH NSDSGSVSET
Sbjct: 721 HERRRLQKKKGLAFKHSPQSVFPDAERQNGACNIDTSTVDSSSVDVNNHMNSDSGSVSET 780

Query: 781 CLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQ 840
           C+PGGEVSFSDNGYAKT+QPKFN KLSLLGHGPHGKLVVD+LL+EYGEDGIRQFCQRWRQ
Sbjct: 781 CVPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDYLLKEYGEDGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 882
           VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKA P NE
Sbjct: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKAFPDNE 881

[Close]

BLAST of HG10005400 vs. ExPASy TrEMBL
Match: A0A1S3C120 (protein RRP6-like 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495596 PE=4 SV=1)

HSP 1 Score: 1620.1 bits (4194), Expect = 0.0e+00
Identity = 820/882 (92.97%), Postives = 838/882 (95.01%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLRDDQKPQYAFKRVLAENSYS 60
           MELQHKVKIALVVASFAALTILFTARRRRKRRS  +SCYLRDDQKPQYAFKRVLA+NSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQLE 120
           AFKHLK NMNKDNDVNSHPYESEILSLLENSS E +FISE TDLTLSDTY WVETESQLE
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFISERTDLTLSDTYAWVETESQLE 120

Query: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFA 180
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QISTH+EDYLVDTIALHDSMNLLRPVFA
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           N  ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC VATNK
Sbjct: 181 NRSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLL ELKQVNENSSTDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFLLEASRR 300

Query: 301 SNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLMA 360
           SNMT LQLYSKET+GSPGESAASSISSR+LN QGGS LISCKTQFQD VRRLCAWRDLMA
Sbjct: 301 SNMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSALISCKTQFQDRVRRLCAWRDLMA 360

Query: 361 RVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSHL 420
           RVHDESLRYVLSDQAI+ +A QV K+TGELYATIAQADLNVDLSSS FLPSPS VVCSHL
Sbjct: 361 RVHDESLRYVLSDQAILAIAIQVPKSTGELYATIAQADLNVDLSSSPFLPSPSSVVCSHL 420

Query: 421 DDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480
           DDIH LLHD   +LD  FL ILQNCIGS+GSCPLSIFNYALLVKYNLKMMTISKHNDRKN
Sbjct: 421 DDIHCLLHDNFGDLDRFFLGILQNCIGSNGSCPLSIFNYALLVKYNLKMMTISKHNDRKN 480

Query: 481 AKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540
           AKQISKKASRELFVQKFSCKSPVYHN RIYANDGRLLCYCDRRKLEWYLRRELAELVADD
Sbjct: 481 AKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLRRELAELVADD 540

Query: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600
           PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH
Sbjct: 541 PPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKSH 600

Query: 601 RSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDM-AEPSDSGTNV 660
           RSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVD KEAFDM AEPSDS TNV
Sbjct: 601 RSHDIVLLCVDCHETAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFDMAAEPSDSETNV 660

Query: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSP 720
            EEGVSPLELRTAAMALLRHGPRMP KRQEELML+VM+YYGRREISEEDLERALLVGMSP
Sbjct: 661 HEEGVSPLELRTAAMALLRHGPRMPLKRQEELMLVVMKYYGRREISEEDLERALLVGMSP 720

Query: 721 HERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSET 780
           HERRR+QKKKGLAFKHS  SVFPDAEHQNGACNIDTSTV NSSVD NNH NSDSGSVS+T
Sbjct: 721 HERRRVQKKKGLAFKHSPQSVFPDAEHQNGACNIDTSTVDNSSVDVNNHMNSDSGSVSDT 780

Query: 781 CLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQ 840
           C PGGEVSFSDNGYAKT+QPKFN KLSLLGHGPHGKLVVD+LL+EY EDGIRQFCQRWRQ
Sbjct: 781 CGPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPHGKLVVDYLLKEYHEDGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 882
           VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE
Sbjct: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 881

[Close]

BLAST of HG10005400 vs. ExPASy TrEMBL
Match: A0A6J1C5X3 (protein RRP6-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007668 PE=4 SV=1)

HSP 1 Score: 1594.3 bits (4127), Expect = 0.0e+00
Identity = 800/882 (90.70%), Postives = 834/882 (94.56%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLR-DDQKPQYAFKRVLAENSY 60
           MEL+HKVKI L VASFAALTILFTARRRRK++SVRSSCYLR DDQK QY FKRVLA+NSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 61  SAFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQL 120
           S FKHLK NMN DNDVNSHPYESEILSLLENS  E+DF+SE  D T SD YVWVETESQL
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFVSERKDFTSSDAYVWVETESQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVF 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QIST +EDYLVD IALHDSMNLLRP+F
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTRKEDYLVDAIALHDSMNLLRPIF 180

Query: 181 ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATN 240
           ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGVATN
Sbjct: 181 ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATN 240

Query: 241 KMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASR 300
           KMLQREDWRQRPLSA+MVQYARTDAHYLL+IANCLLSELKQVNENSSTDDKFNFLLEASR
Sbjct: 241 KMLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVNENSSTDDKFNFLLEASR 300

Query: 301 RSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLM 360
           RSNM  LQLY+KET+GSPGESAASSISSR LN QG ST+ISCKTQFQD VRRLCAWRDLM
Sbjct: 301 RSNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDLM 360

Query: 361 ARVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSH 420
           ARVHDESLRYVLSDQAIV LAN+V KNT ELYATIAQADL+VDLS SLFLPSPSPVVCSH
Sbjct: 361 ARVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCSH 420

Query: 421 LDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRK 480
           LDD+H LLHDKS +LDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHN RK
Sbjct: 421 LDDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHRK 480

Query: 481 NAKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVAD 540
           NAKQISKKASRELFVQKFSCKSPVYHN RIYANDGRLLCYCDRRKLEWY+RRELAELV D
Sbjct: 481 NAKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYVRRELAELVDD 540

Query: 541 DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS 600
           DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS
Sbjct: 541 DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS 600

Query: 601 HRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDMAEPSDSGTNV 660
           HRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVD KEAF++AEPSDSGTN 
Sbjct: 601 HRSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAEPSDSGTNF 660

Query: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSP 720
           QEEGVSPLELRTAAMALLRHGPRMPSKRQEELML VMRYYGRREISEEDLERALLVGMSP
Sbjct: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLERALLVGMSP 720

Query: 721 HERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSET 780
           HERRRLQKK+G+A KHSA S FP+AEHQNGAC+IDTST VNSSVD N+HTNSDSGSVS+ 
Sbjct: 721 HERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSVDINSHTNSDSGSVSDK 780

Query: 781 CLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQ 840
           CLPGG+V FSDNG A+T+QPKFNPKLSLLGHGPHGK VVDHLLREYGE+GIRQFCQRWRQ
Sbjct: 781 CLPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPKKKASPANE 882
           VFVAA +PRFLPAGWDVNHSGRRDFGEFS+YNP KKASP+NE
Sbjct: 841 VFVAATKPRFLPAGWDVNHSGRRDFGEFSVYNPIKKASPSNE 881

[Close]

BLAST of HG10005400 vs. ExPASy TrEMBL
Match: A0A5A7T9W4 (Protein RRP6-like 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold888G00270 PE=4 SV=1)

HSP 1 Score: 1558.1 bits (4033), Expect = 0.0e+00
Identity = 800/908 (88.11%), Postives = 826/908 (90.97%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLRDDQKPQYAFKRVLAENSYS 60
           MELQHKVKIALVVASFAALTILFTARRRRKRRS  +SCYLRDDQKPQYAFKRVLA+NSYS
Sbjct: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSGSTSCYLRDDQKPQYAFKRVLADNSYS 60

Query: 61  AFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQLE 120
           AFKHLK NMNKDNDVNSHPYESEILSLLENSS E +FISE TDLTLSDTY WVETESQL+
Sbjct: 61  AFKHLKLNMNKDNDVNSHPYESEILSLLENSSPELNFISERTDLTLSDTYAWVETESQLK 120

Query: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVFA 180
           ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QISTH+EDYLVDTIALHDSMNLLRPVFA
Sbjct: 121 ELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTHKEDYLVDTIALHDSMNLLRPVFA 180

Query: 181 NSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATNK 240
           N  ICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKP KSLAYLLETYC VATNK
Sbjct: 181 NRSICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPMKSLAYLLETYCRVATNK 240

Query: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASRR 300
           MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLL ELKQVNENSSTDDKFNFLLEASRR
Sbjct: 241 MLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLFELKQVNENSSTDDKFNFLLEASRR 300

Query: 301 SNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKT----------------- 360
           SNMT LQLYSKET+GSPGESAASSISSR+LN QGGS LISCKT                 
Sbjct: 301 SNMTCLQLYSKETEGSPGESAASSISSRHLNSQGGSALISCKTQVSCPPDDFDGVTFEAV 360

Query: 361 ---------QFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVLANQVSKNTGELYATI 420
                    QFQD VRRLCAWRDLMARVHDESLRYVLSDQAI+ +A QV K+TGELYATI
Sbjct: 361 SYTNLCFLIQFQDRVRRLCAWRDLMARVHDESLRYVLSDQAILAIAIQVPKSTGELYATI 420

Query: 421 AQADLNVDLSSSLFLPSPSPVVCSHLDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPL 480
           AQADLNVDLSSS FLPSPS VVCSHLDDIH LLH+   +LD  FL ILQNCIGS+GSCPL
Sbjct: 421 AQADLNVDLSSSPFLPSPSSVVCSHLDDIHCLLHNNFGDLDKFFLGILQNCIGSNGSCPL 480

Query: 481 SIFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHNFRIYANDG 540
           SIFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHN RIYANDG
Sbjct: 481 SIFNYALLVKYNLKMMTISKHNDRKNAKQISKKASRELFVQKFSCKSPVYHNCRIYANDG 540

Query: 541 RLLCYCDRRKLEWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCG 600
           RLLCYCDRRKLEWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCG
Sbjct: 541 RLLCYCDRRKLEWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCG 600

Query: 601 EGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIP 660
           EGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIP
Sbjct: 601 EGNHYLRYRIIPSCYRIHFPEHLKSHRSHDIVLLCVDCHETAHAAAEKHKRELAAEFGIP 660

Query: 661 LFVRRVVDAKEAFDM-AEPSDSGTNVQEEGVSPLELRTAAMALLRHGPRMPSKRQEELML 720
           LFVRRVVD KEAFDM AEPSDS TNV EEGVSPLELRTAAMALLRHGPRMP KRQEELML
Sbjct: 661 LFVRRVVDTKEAFDMAAEPSDSETNVHEEGVSPLELRTAAMALLRHGPRMPLKRQEELML 720

Query: 721 IVMRYYGRREISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNI 780
           +VM+YYGRREISEEDLERALLVGMSPHERRR+QKKKGLAFKHS  SVFPDAEHQNGACNI
Sbjct: 721 VVMKYYGRREISEEDLERALLVGMSPHERRRVQKKKGLAFKHSPQSVFPDAEHQNGACNI 780

Query: 781 DTSTVVNSSVDANNHTNSDSGSVSETCLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPH 840
           DTSTV NSSVD NNH NSDSGSVS+TC PGGEVSFSDNGYAKT+QPKFN KLSLLGHGPH
Sbjct: 781 DTSTVDNSSVDVNNHMNSDSGSVSDTCGPGGEVSFSDNGYAKTAQPKFNSKLSLLGHGPH 840

Query: 841 GKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYNPK 882
           GKLVVD+LL+EY EDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNH   +++   SL   +
Sbjct: 841 GKLVVDYLLKEYHEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHRPNKEW--ISLICVR 900

[Close]

BLAST of HG10005400 vs. ExPASy TrEMBL
Match: A0A6J1C2I3 (protein RRP6-like 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007668 PE=4 SV=1)

HSP 1 Score: 1552.7 bits (4019), Expect = 0.0e+00
Identity = 780/859 (90.80%), Postives = 812/859 (94.53%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTARRRRKRRSVRSSCYLR-DDQKPQYAFKRVLAENSY 60
           MEL+HKVKI L VASFAALTILFTARRRRK++SVRSSCYLR DDQK QY FKRVLA+NSY
Sbjct: 1   MELKHKVKIVLAVASFAALTILFTARRRRKQKSVRSSCYLRGDDQKXQYTFKRVLADNSY 60

Query: 61  SAFKHLKRNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYVWVETESQL 120
           S FKHLK NMN DNDVNSHPYESEILSLLENS  E+DF+SE  D T SD YVWVETESQL
Sbjct: 61  SVFKHLKLNMNTDNDVNSHPYESEILSLLENSFPEYDFVSERKDFTSSDAYVWVETESQL 120

Query: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDSMNLLRPVF 180
           EELVDVLNKEMVFAVDTEQHSLRSFLGFTALI QIST +EDYLVD IALHDSMNLLRP+F
Sbjct: 121 EELVDVLNKEMVFAVDTEQHSLRSFLGFTALI-QISTRKEDYLVDAIALHDSMNLLRPIF 180

Query: 181 ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLETYCGVATN 240
           ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACE+LSKPQKSLAYLLETYCGVATN
Sbjct: 181 ANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACELLSKPQKSLAYLLETYCGVATN 240

Query: 241 KMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQVNENSSTDDKFNFLLEASR 300
           KMLQREDWRQRPLSA+MVQYARTDAHYLL+IANCLLSELKQVNENSSTDDKFNFLLEASR
Sbjct: 241 KMLQREDWRQRPLSAEMVQYARTDAHYLLHIANCLLSELKQVNENSSTDDKFNFLLEASR 300

Query: 301 RSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVRRLCAWRDLM 360
           RSNM  LQLY+KET+GSPGESAASSISSR LN QG ST+ISCKTQFQD VRRLCAWRDLM
Sbjct: 301 RSNMICLQLYAKETEGSPGESAASSISSRRLNSQGVSTIISCKTQFQDLVRRLCAWRDLM 360

Query: 361 ARVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSLFLPSPSPVVCSH 420
           ARVHDESLRYVLSDQAIV LAN+V KNT ELYATIAQADL+VDLS SLFLPSPSPVVCSH
Sbjct: 361 ARVHDESLRYVLSDQAIVALANKVPKNTMELYATIAQADLHVDLSPSLFLPSPSPVVCSH 420

Query: 421 LDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNDRK 480
           LDD+H LLHDKS +LDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHN RK
Sbjct: 421 LDDLHCLLHDKSGDLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLKMMTISKHNHRK 480

Query: 481 NAKQISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKLEWYLRRELAELVAD 540
           NAKQISKKASRELFVQKFSCKSPVYHN RIYANDGRLLCYCDRRKLEWY+RRELAELV D
Sbjct: 481 NAKQISKKASRELFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYVRRELAELVDD 540

Query: 541 DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS 600
           DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS
Sbjct: 541 DPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRIHFPEHLKS 600

Query: 601 HRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKEAFDMAEPSDSGTNV 660
           HRSHDIVLLCVDCHE AHAAAEKHKRELAAEFGIPLFVRRVVD KEAF++AEPSDSGTN 
Sbjct: 601 HRSHDIVLLCVDCHEIAHAAAEKHKRELAAEFGIPLFVRRVVDTKEAFNLAEPSDSGTNF 660

Query: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRREISEEDLERALLVGMSP 720
           QEEGVSPLELRTAAMALLRHGPRMPSKRQEELML VMRYYGRREISEEDLERALLVGMSP
Sbjct: 661 QEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLTVMRYYGRREISEEDLERALLVGMSP 720

Query: 721 HERRRLQKKKGLAFKHSAHSVFPDAEHQNGACNIDTSTVVNSSVDANNHTNSDSGSVSET 780
           HERRRLQKK+G+A KHSA S FP+AEHQNGAC+IDTST VNSSVD N+HTNSDSGSVS+ 
Sbjct: 721 HERRRLQKKRGIALKHSAQSNFPNAEHQNGACDIDTSTAVNSSVDINSHTNSDSGSVSDK 780

Query: 781 CLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHGPHGKLVVDHLLREYGEDGIRQFCQRWRQ 840
           CLPGG+V FSDNG A+T+QPKFNPKLSLLGHGPHGK VVDHLLREYGE+GIRQFCQRWRQ
Sbjct: 781 CLPGGQVGFSDNGSARTAQPKFNPKLSLLGHGPHGKQVVDHLLREYGEEGIRQFCQRWRQ 840

Query: 841 VFVAAIQPRFLPAGWDVNH 859
           VFVAA +PRFLPAGWDVNH
Sbjct: 841 VFVAATKPRFLPAGWDVNH 858

[Close]

BLAST of HG10005400 vs. TAIR 10
Match: AT2G32415.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 1103.6 bits (2853), Expect = 0.0e+00
Identity = 573/906 (63.25%), Postives = 698/906 (77.04%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTA-----RRRRKRRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL+ K K+ + VAS  A+TILF       R+RRK+ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  ENSYSAFKHLK----RNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYV 120
           +NSYS FKHLK     + + +   N HPYE+EI  LLEN   EF F+     L +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 121 WVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDS 180
           WVETESQL+EL ++L KE VFAVDTEQHSLRSFLGFTALI QISTHEED+LVDTIALHD 
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALI-QISTHEEDFLVDTIALHDV 180

Query: 181 MNLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           M++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV-NENSSTDDK 300
           T CGVATNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L +ELKQ+  ++SS DD+
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 300

Query: 301 FNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVR 360
           F+FLLEASRRSNMT LQLY+KET+  PG +A+SSI  R+LNG G  + IS     ++ VR
Sbjct: 301 FHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNA--EELVR 360

Query: 361 RLCAWRDLMARVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSL--F 420
           +LCAWRDLM R+HDES RYVLSDQAIV L+ +    T E+Y TIA  DL  + S SL   
Sbjct: 361 KLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSS 420

Query: 421 LPSPSPVVCSHLDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLK 480
           + SP PV+CSHLDDI+ ++ DK   LD++  V+L+ C+G++G+CP+S+FNY+LLV +  K
Sbjct: 421 VQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTK 480

Query: 481 MMTIS--KHNDRKNAK-QISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKL 540
           + + S  K N  KN K Q ++KASRELFV+KFSCK+PVYHN RIYANDGRLLCYCD+RKL
Sbjct: 481 LSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKL 540

Query: 541 EWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRII 600
           EWYL R LA+LV ++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRII
Sbjct: 541 EWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRII 600

Query: 601 PSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKE 660
           PSCYR+HFPEHLKSHRSHDIVLLCVDCHE AHAAAE++K+++A EFGIPLFVRRV+D+KE
Sbjct: 601 PSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKE 660

Query: 661 A---FDMAEPSDSGTNVQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRR 720
           A     + E   +G + ++ GVSPL LR+AAMALLRHG RMPS R+EEL+  V  YYG R
Sbjct: 661 AQGTSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGR 720

Query: 721 EISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAHSVFPDA---EHQNGAC-------- 780
           ++SEEDLE+ALL+G+SPHERR+L++KKG++FKHSA     D    E+ +G          
Sbjct: 721 DLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGEALADFEKIM 780

Query: 781 NIDTSTVVNSSVDANNHTNSDSGSVSETCLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHG 840
            ++ STVV+ S D  +  +         C          NG     Q   N KLSLLGHG
Sbjct: 781 TVERSTVVDDSGDGTSEGDGAKELNDTQC----------NGNTLHQQ---NSKLSLLGHG 840

Query: 841 PHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNHSGRRDFGEFSLYN 878
           PHGK +V++LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+HSGRRDFGEFS+YN
Sbjct: 841 PHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSHSGRRDFGEFSVYN 889

[Close]

BLAST of HG10005400 vs. TAIR 10
Match: AT2G32415.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 1071.6 bits (2770), Expect = 3.2e-313
Identity = 558/887 (62.91%), Postives = 681/887 (76.78%), Query Frame = 0


Query: 1   MELQHKVKIALVVASFAALTILFTA-----RRRRKRRSVRSSCYLRDDQKPQYAFKRVLA 60
           MEL+ K K+ + VAS  A+TILF       R+RRK+ S  SSCYL  + KPQ+ FKRVLA
Sbjct: 1   MELKEKAKVVITVASLVAVTILFVTEYRRRRQRRKQTSSLSSCYLHSELKPQFGFKRVLA 60

Query: 61  ENSYSAFKHLK----RNMNKDNDVNSHPYESEILSLLENSSSEFDFISEGTDLTLSDTYV 120
           +NSYS FKHLK     + + +   N HPYE+EI  LLEN   EF F+     L +SD+YV
Sbjct: 61  DNSYSEFKHLKLVDASSSSLEKPSNGHPYETEITVLLENPQIEFGFLRGECSLEMSDSYV 120

Query: 121 WVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYLVDTIALHDS 180
           WVETESQL+EL ++L KE VFAVDTEQHSLRSFLGFTALI QISTHEED+LVDTIALHD 
Sbjct: 121 WVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALI-QISTHEEDFLVDTIALHDV 180

Query: 181 MNLLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSKPQKSLAYLLE 240
           M++LRPVF++  ICKVFHGADND++WLQRDFHIYVVN+FDTAKACEVLSKPQ+SLAYLLE
Sbjct: 181 MSILRPVFSDPNICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLSKPQRSLAYLLE 240

Query: 241 TYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV-NENSSTDDK 300
           T CGVATNK+LQREDWRQRPLS +MV+YARTDAHYLLYIA+ L +ELKQ+  ++SS DD+
Sbjct: 241 TVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATDSSSPDDR 300

Query: 301 FNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISCKTQFQDYVR 360
           F+FLLEASRRSNMT LQLY+KET+  PG +A+SSI  R+LNG G  + IS     ++ VR
Sbjct: 301 FHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHGDKSNISLNA--EELVR 360

Query: 361 RLCAWRDLMARVHDESLRYVLSDQAIVVLANQVSKNTGELYATIAQADLNVDLSSSL--F 420
           +LCAWRDLM R+HDES RYVLSDQAIV L+ +    T E+Y TIA  DL  + S SL   
Sbjct: 361 KLCAWRDLMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSS 420

Query: 421 LPSPSPVVCSHLDDIHHLLHDKSRNLDNIFLVILQNCIGSDGSCPLSIFNYALLVKYNLK 480
           + SP PV+CSHLDDI+ ++ DK   LD++  V+L+ C+G++G+CP+S+FNY+LLV +  K
Sbjct: 421 VQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTK 480

Query: 481 MMTIS--KHNDRKNAK-QISKKASRELFVQKFSCKSPVYHNFRIYANDGRLLCYCDRRKL 540
           + + S  K N  KN K Q ++KASRELFV+KFSCK+PVYHN RIYANDGRLLCYCD+RKL
Sbjct: 481 LSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKL 540

Query: 541 EWYLRRELAELVADDPPAIKLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRII 600
           EWYL R LA+LV ++PPAI LLFEPKGRPEDEGNDFYIQ+K+NICVGCGEG HYLRYRII
Sbjct: 541 EWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRII 600

Query: 601 PSCYRIHFPEHLKSHRSHDIVLLCVDCHEAAHAAAEKHKRELAAEFGIPLFVRRVVDAKE 660
           PSCYR+HFPEHLKSHRSHDIVLLCVDCHE AHAAAE++K+++A EFGIPLFVRRV+D+KE
Sbjct: 601 PSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKE 660

Query: 661 A---FDMAEPSDSGTNVQEEGVSPLELRTAAMALLRHGPRMPSKRQEELMLIVMRYYGRR 720
           A     + E   +G + ++ GVSPL LR+AAMALLRHG RMPS R+EEL+  V  YYG R
Sbjct: 661 AQGTSSLVEDESTGDS-EDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYYGGR 720

Query: 721 EISEEDLERALLVGMSPHERRRLQKKKGLAFKHSAHSVFPDA---EHQNGAC-------- 780
           ++SEEDLE+ALL+G+SPHERR+L++KKG++FKHSA     D    E+ +G          
Sbjct: 721 DLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSAEVAGMDKQEDENNDGEALADFEKIM 780

Query: 781 NIDTSTVVNSSVDANNHTNSDSGSVSETCLPGGEVSFSDNGYAKTSQPKFNPKLSLLGHG 840
            ++ STVV+ S D  +  +         C          NG     Q   N KLSLLGHG
Sbjct: 781 TVERSTVVDDSGDGTSEGDGAKELNDTQC----------NGNTLHQQ---NSKLSLLGHG 840

Query: 841 PHGKLVVDHLLREYGEDGIRQFCQRWRQVFVAAIQPRFLPAGWDVNH 859
           PHGK +V++LLRE+GEDG+R FCQRWR+VFV A+ PR LP GW+V+H
Sbjct: 841 PHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSH 870

[Close]

BLAST of HG10005400 vs. TAIR 10
Match: AT5G35910.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 197.2 bits (500), Expect = 5.5e-50
Identity = 133/350 (38.00%), Postives = 190/350 (54.29%), Query Frame = 0


Query: 44  QKPQYAFKRVLAENSYSAFKHLKRNMNKDNDVNSHPYES-EILSLLENSSSEFDFISEGT 103
           +KPQ  +  +L  N+   F+H+    ++D+    HP E   +L  ++   +E + +    
Sbjct: 196 KKPQEEY-NILVNNANLPFEHVWLERSEDDLRAMHPLEKFSVLDFVDKDVNEMEPVK--- 255

Query: 104 DLTLSDT-YVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDY 163
            L L  T + +V+    L+ELV  L     FAVD E +  RSF G T L+ QIST  EDY
Sbjct: 256 PLPLEQTPFKFVQEVKDLKELVAKLRSVEEFAVDLEHNQYRSFQGLTCLM-QISTRTEDY 315

Query: 164 LVDTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLS 223
           +VDT  L   +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL+
Sbjct: 316 IVDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRDFGIYVCNLFDTGQASRVLN 375

Query: 224 KPQKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQ 283
             + SL +LL+ +CGV  NK  Q  DWR RPL  +M +YAR D HYLLYI + +  EL++
Sbjct: 376 LERNSLEFLLQHFCGVTANKEYQNADWRIRPLPEEMTRYAREDTHYLLYIYDLIKLELQR 435

Query: 284 VNENSSTDDKFNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLIS 343
           + ++ +  D  + LLE  +RS     QLY KE              + YL+  G      
Sbjct: 436 MAKDDAHTD--SPLLEVYKRSYDVCTQLYEKEL----------LTENSYLHVYGLQAAGF 495

Query: 344 CKTQFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVLANQVSKNTGEL 391
              Q    V  LC WRD +AR  DES  YVL ++ ++ +A ++  + G+L
Sbjct: 496 NAAQLA-IVAGLCEWRDFIARAEDESTGYVLPNKVLLEIAKEMPDSVGKL 527

[Close]

BLAST of HG10005400 vs. TAIR 10
Match: AT1G54440.1 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 191.4 bits (485), Expect = 3.0e-48
Identity = 133/342 (38.89%), Postives = 182/342 (53.22%), Query Frame = 0


Query: 45  KPQYAFKRVLAENSYSAFKHLKRNMNKDNDVNSHPYES-EILSLLENSSSEFDFISEGTD 104
           KPQ  +K +L +N+ + F+H+    ++D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVK---P 111

Query: 105 LTLSDT-YVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYL 164
           L L +T +  VE    LE+L   L     FAVD E +  R+F G T L+ QIST  EDY+
Sbjct: 112 LPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLM-QISTRTEDYI 171

Query: 165 VDTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSK 224
           VD   L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL  
Sbjct: 172 VDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKL 231

Query: 225 PQKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV 284
            + SL +LL+ YCGVA NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  +
Sbjct: 232 ERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTM 291

Query: 285 NENSSTDDKFNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISC 344
            +     D  + L+E  +RS    +QLY KE                YL+  G  T    
Sbjct: 292 AKEDEQSD--SPLVEVYKRSYDVCMQLYEKEL----------WTRDSYLHVYGVQTGNLN 351

Query: 345 KTQFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVLANQV 384
             Q    V  LC WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 AVQL-SIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

[Close]

BLAST of HG10005400 vs. TAIR 10
Match: AT1G54440.2 (Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain )

HSP 1 Score: 191.4 bits (485), Expect = 3.0e-48
Identity = 133/342 (38.89%), Postives = 182/342 (53.22%), Query Frame = 0


Query: 45  KPQYAFKRVLAENSYSAFKHLKRNMNKDNDVNSHPYES-EILSLLENSSSEFDFISEGTD 104
           KPQ  +K +L +N+ + F+H+    ++D     HP E   ++  ++ + SE   +     
Sbjct: 52  KPQEEYK-ILVDNANNPFEHVLLEKSEDGLRFIHPLEELSVMDFVDRNLSEMRPVK---P 111

Query: 105 LTLSDT-YVWVETESQLEELVDVLNKEMVFAVDTEQHSLRSFLGFTALIQQISTHEEDYL 164
           L L +T +  VE    LE+L   L     FAVD E +  R+F G T L+ QIST  EDY+
Sbjct: 112 LPLEETPFKLVEEVKDLEDLAAALQSVEEFAVDLEHNQYRTFQGLTCLM-QISTRTEDYI 171

Query: 165 VDTIALHDSMN-LLRPVFANSRICKVFHGADNDILWLQRDFHIYVVNLFDTAKACEVLSK 224
           VD   L D +   LR +F + +  KV HGAD DI+WLQRDF IYV NLFDT +A  VL  
Sbjct: 172 VDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRDFGIYVCNLFDTGQASRVLKL 231

Query: 225 PQKSLAYLLETYCGVATNKMLQREDWRQRPLSADMVQYARTDAHYLLYIANCLLSELKQV 284
            + SL +LL+ YCGVA NK  Q+ DWR RPL   M +YAR D HYLLYI + +  EL  +
Sbjct: 232 ERNSLEFLLKHYCGVAANKEYQKADWRIRPLPDVMKRYAREDTHYLLYIYDVMRMELHTM 291

Query: 285 NENSSTDDKFNFLLEASRRSNMTSLQLYSKETDGSPGESAASSISSRYLNGQGGSTLISC 344
            +     D  + L+E  +RS    +QLY KE                YL+  G  T    
Sbjct: 292 AKEDEQSD--SPLVEVYKRSYDVCMQLYEKEL----------WTRDSYLHVYGVQTGNLN 351

Query: 345 KTQFQDYVRRLCAWRDLMARVHDESLRYVLSDQAIVVLANQV 384
             Q    V  LC WRD +AR  DES  YVL ++ +  +A ++
Sbjct: 352 AVQL-SIVAGLCEWRDRIARADDESTGYVLPNKTLFDIAKEM 375

The following BLAST results are available for this feature:

BLAST of HG10005400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887745.1	0.0e+00	93.42	protein RRP6-like 3 [Benincasa hispida] >XP_038887746.1 protein RRP6-like 3 [Ben...	[more]
XP_011658699.1	0.0e+00	93.42	protein RRP6-like 3 isoform X1 [Cucumis sativus] >KGN43518.1 hypothetical protei...	[more]
XP_008455438.1	0.0e+00	92.97	PREDICTED: protein RRP6-like 3 isoform X1 [Cucumis melo]	[more]
XP_022135803.1	0.0e+00	90.70	protein RRP6-like 3 isoform X1 [Momordica charantia]	[more]
KAA0040242.1	0.0e+00	88.11	protein RRP6-like 3 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of HG10005400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LLI8	0.0e+00	63.18	Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1	[more]
A9LLI7	7.7e-49	38.00	Protein RRP6-like 2 OS=Arabidopsis thaliana OX=3702 GN=RRP6L2 PE=2 SV=1	[more]
Q0WVE8	4.2e-47	38.89	Protein RRP6-like 1 OS=Arabidopsis thaliana OX=3702 GN=RRP6L1 PE=2 SV=1	[more]
Q10146	8.0e-46	38.27	Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Q12149	2.8e-43	37.60	Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]

BLAST of HG10005400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K254	0.0e+00	93.42	HRDC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G043600 PE=4 S...	[more]
A0A1S3C120	0.0e+00	92.97	protein RRP6-like 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495596 PE=4 SV=1	[more]
A0A6J1C5X3	0.0e+00	90.70	protein RRP6-like 3 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007668 PE...	[more]
A0A5A7T9W4	0.0e+00	88.11	Protein RRP6-like 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1C2I3	0.0e+00	90.80	protein RRP6-like 3 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007668 PE...	[more]

BLAST of HG10005400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G32415.1	0.0e+00	63.25	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT2G32415.2	3.2e-313	62.91	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT5G35910.1	5.5e-50	38.00	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.1	3.0e-48	38.89	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]
AT1G54440.2	3.0e-48	38.89	Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002562	3'-5' exonuclease domain	SMART	SM00474	35exoneu6	coord: 110..279 e-value: 5.1E-39 score: 145.6
IPR002562	3'-5' exonuclease domain	PFAM	PF01612	DNA_pol_A_exo1	coord: 110..278 e-value: 5.2E-45 score: 153.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 22..314 e-value: 1.3E-80 score: 272.9
IPR002121	HRDC domain	PFAM	PF00570	HRDC	coord: 348..391 e-value: 5.0E-6 score: 26.4
IPR002121	HRDC domain	PROSITE	PS50967	HRDC	coord: 342..422 score: 9.029402
IPR044876	HRDC domain superfamily	GENE3D	1.10.150.80	HRDC domain	coord: 338..437 e-value: 3.2E-20 score: 73.9
IPR045092	Exosome complex exonuclease Rrp6-like	PANTHER	PTHR12124	POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED	coord: 1..876
None	No IPR available	PANTHER	PTHR12124:SF68	PROTEIN RRP6-LIKE 3	coord: 1..876
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 45..295
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 342..429

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005400.1	HG10005400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071040	nuclear polyadenylation-dependent antisense transcript catabolic process
biological_process	GO:0071039	nuclear polyadenylation-dependent CUT catabolic process
biological_process	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process
biological_process	GO:0071036	nuclear polyadenylation-dependent snoRNA catabolic process
biological_process	GO:0071037	nuclear polyadenylation-dependent snRNA catabolic process
biological_process	GO:0071038	nuclear polyadenylation-dependent tRNA catabolic process
biological_process	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0071044	histone mRNA catabolic process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0000175	3'-5'-exoribonuclease activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding