HG10005346 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005346
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionEquilibrative nucleoside transporter 2-like
LocationChr07: 1707460 .. 1707708 (-)
RNA-Seq ExpressionHG10005346
SyntenyHG10005346
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAGAAACTGGTGAGCAACATTATACTAACTACAATTCTAATTCCTCTACGAAAGCTTTCTCTATTTATCCTAATTGTACTTCTAGCAAGTTTTCTTCTTCTTCTTCAAAACAGCCCACCAAATTTTCCCATAATGGCTCTGTCTCTGGCGTCAAACACGGCCGCGAGAGGGACGAGTTGAAAAAGGTTGAAGAGTCTCTAAGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGA

mRNA sequence

ATGGCTGCAGAAACTGGTGAGCAACATTATACTAACTACAATTCTAATTCCTCTACGAAAGCTTTCTCTATTTATCCTAATTGTACTTCTAGCAAGTTTTCTTCTTCTTCTTCAAAACAGCCCACCAAATTTTCCCATAATGGCTCTGTCTCTGGCGTCAAACACGGCCGCGAGAGGGACGAGTTGAAAAAGGTTGAAGAGTCTCTAAGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGA

Coding sequence (CDS)

ATGGCTGCAGAAACTGGTGAGCAACATTATACTAACTACAATTCTAATTCCTCTACGAAAGCTTTCTCTATTTATCCTAATTGTACTTCTAGCAAGTTTTCTTCTTCTTCTTCAAAACAGCCCACCAAATTTTCCCATAATGGCTCTGTCTCTGGCGTCAAACACGGCCGCGAGAGGGACGAGTTGAAAAAGGTTGAAGAGTCTCTAAGAACCGTCATGTATTTGAGTTGTTGGGGCCCTAATTCATGA

Protein sequence

MAAETGEQHYTNYNSNSSTKAFSIYPNCTSSKFSSSSSKQPTKFSHNGSVSGVKHGRERDELKKVEESLRTVMYLSCWGPNS
Homology
BLAST of HG10005346 vs. NCBI nr
Match: KGN43575.1 (hypothetical protein Csa_020190 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 3.1e-18
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 1  MAAETGEQHYTNYNSNSSTKA-FSIYPNCTSSKFSSSSSKQPTKFSHNGSVSGVKHGRER 60
          MA E  +Q+ TN+NSNSS K  FSIYPN TSSK SSSSSK PTKFSHNGSVS      E+
Sbjct: 1  MAGEQ-QQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVS----QGEK 60

Query: 61 DELKKVEESLRTVMYLSCWGPNS 83
          D++KK EESLRTVMYLSCWGPNS
Sbjct: 61 DKIKKAEESLRTVMYLSCWGPNS 78

BLAST of HG10005346 vs. NCBI nr
Match: KAG6572336.1 (hypothetical protein SDJN03_29064, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.4 bits (220), Expect = 1.6e-14
Identity = 55/89 (61.80%), Postives = 62/89 (69.66%), Query Frame = 0

Query: 1  MAAETGEQHYTNYNSNSSTKAFSIYPNCTSSKFSSS-SSKQPTKFSH------NGSVSGV 60
          MAAETGE+ YTNY+S+ ST         +S+KFSSS SSKQ   FS       +GS SG 
Sbjct: 2  MAAETGEKRYTNYSSDHSTS--------SSAKFSSSASSKQAITFSRDGSGSGSGSGSGA 61

Query: 61 KHGRERDELKKVEESLRTVMYLSCWGPNS 83
          KHG ERD L+K EESLRTVMYLSCWGPNS
Sbjct: 62 KHGGERDRLRKAEESLRTVMYLSCWGPNS 82

BLAST of HG10005346 vs. NCBI nr
Match: KDP20875.1 (hypothetical protein JCGZ_21346 [Jatropha curcas])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 34 SSSSSKQPTKFSHNGSVSGVKHGRERDELKKVEESLRTVMYLSCWGPN 82
          SSSSSKQ   FS   S SG     + D+LK+ EESLRTVMYLSCWGPN
Sbjct: 43 SSSSSKQARLFSGAVSDSGAFKANKNDKLKQAEESLRTVMYLSCWGPN 90

BLAST of HG10005346 vs. NCBI nr
Match: KAE8724235.1 (equilibrative nucleoside transporter 2-like [Hibiscus syriacus])

HSP 1 Score: 57.4 bits (137), Expect = 6.8e-05
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 18 STKAFSIYPNCTSSKF---SSSSSKQPTKFSHNGSVSGVKHGRERDELKKVEESLRTVMY 77
          ++K  S   + T S F   SSSSSKQ + F  N   SGV    E D+LK+ EESLRTVMY
Sbjct: 5  ASKCESCLRSSTGSGFSSSSSSSSKQASSFC-NTIKSGVSKTAENDKLKQAEESLRTVMY 64

Query: 78 LSCWGPN 82
          LSCWGPN
Sbjct: 65 LSCWGPN 70

BLAST of HG10005346 vs. NCBI nr
Match: PIN05562.1 (hypothetical protein CDL12_21899 [Handroanthus impetiginosus])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 33 FSSSSSKQPTKFSHNGSVSGVKHGRERDELKKVEESLRTVMYLSCWGPN 82
          F  SSS+Q  KFS     +G+K   + +++K+ EESLRTVMYLSCWGPN
Sbjct: 30 FKDSSSRQVRKFSSAIESTGLKGAAKSEKIKQAEESLRTVMYLSCWGPN 78

BLAST of HG10005346 vs. ExPASy TrEMBL
Match: A0A0A0K1Q2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046140 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 60/83 (72.29%), Postives = 66/83 (79.52%), Query Frame = 0

Query: 1  MAAETGEQHYTNYNSNSSTKA-FSIYPNCTSSKFSSSSSKQPTKFSHNGSVSGVKHGRER 60
          MA E  +Q+ TN+NSNSS K  FSIYPN TSSK SSSSSK PTKFSHNGSVS      E+
Sbjct: 1  MAGEQ-QQYTTNFNSNSSIKTNFSIYPNHTSSKSSSSSSKYPTKFSHNGSVS----QGEK 60

Query: 61 DELKKVEESLRTVMYLSCWGPNS 83
          D++KK EESLRTVMYLSCWGPNS
Sbjct: 61 DKIKKAEESLRTVMYLSCWGPNS 78

BLAST of HG10005346 vs. ExPASy TrEMBL
Match: A0A067JLI7 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21346 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 34 SSSSSKQPTKFSHNGSVSGVKHGRERDELKKVEESLRTVMYLSCWGPN 82
          SSSSSKQ   FS   S SG     + D+LK+ EESLRTVMYLSCWGPN
Sbjct: 43 SSSSSKQARLFSGAVSDSGAFKANKNDKLKQAEESLRTVMYLSCWGPN 90

BLAST of HG10005346 vs. ExPASy TrEMBL
Match: A0A6A3C4W6 (Equilibrative nucleoside transporter 2-like OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00010533pilonHSYRG00039 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.3e-05
Identity = 37/67 (55.22%), Postives = 43/67 (64.18%), Query Frame = 0

Query: 18 STKAFSIYPNCTSSKF---SSSSSKQPTKFSHNGSVSGVKHGRERDELKKVEESLRTVMY 77
          ++K  S   + T S F   SSSSSKQ + F  N   SGV    E D+LK+ EESLRTVMY
Sbjct: 5  ASKCESCLRSSTGSGFSSSSSSSSKQASSFC-NTIKSGVSKTAENDKLKQAEESLRTVMY 64

Query: 78 LSCWGPN 82
          LSCWGPN
Sbjct: 65 LSCWGPN 70

BLAST of HG10005346 vs. ExPASy TrEMBL
Match: A0A2G9GK33 (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21899 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.3e-05
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0

Query: 33 FSSSSSKQPTKFSHNGSVSGVKHGRERDELKKVEESLRTVMYLSCWGPN 82
          F  SSS+Q  KFS     +G+K   + +++K+ EESLRTVMYLSCWGPN
Sbjct: 30 FKDSSSRQVRKFSSAIESTGLKGAAKSEKIKQAEESLRTVMYLSCWGPN 78

BLAST of HG10005346 vs. ExPASy TrEMBL
Match: A0A2P5QQF3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G023900v1 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 34/63 (53.97%), Postives = 40/63 (63.49%), Query Frame = 0

Query: 21 AFSIYPNCTSSKFSSSSSKQPTKFSHNGSVSGVKHGRERDE-LKKVEESLRTVMYLSCWG 80
          A  +  N  S K SSSSSKQ  +FS+      VK     +E LK+ EESLRTVM+LSCWG
Sbjct: 25 ASKLETNLRSLKDSSSSSKQARRFSNTVDSGTVKAAAATNERLKQAEESLRTVMFLSCWG 84

Query: 81 PNS 83
          PNS
Sbjct: 85 PNS 87

BLAST of HG10005346 vs. TAIR 10
Match: AT4G10270.1 (Wound-responsive family protein )

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 24/45 (53.33%), Postives = 29/45 (64.44%), Query Frame = 0

Query: 37 SSKQPTKFSHNGSVSGVKHGRERDELKKVEESLRTVMYLSCWGPN 82
          S  Q  +FS +   + V    E ++ KK EESLRTVMYLSCWGPN
Sbjct: 46 SVSQGKRFSSSSVSAAVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

BLAST of HG10005346 vs. TAIR 10
Match: AT4G10265.1 (Wound-responsive family protein )

HSP 1 Score: 42.0 bits (97), Expect = 2.8e-04
Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 0

Query: 60 DELKKVEESLRTVMYLSCWGPN 82
          ++ K+ EESLRTVMYLSCWGP+
Sbjct: 62 NKTKQAEESLRTVMYLSCWGPS 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN43575.13.1e-1872.29hypothetical protein Csa_020190 [Cucumis sativus][more]
KAG6572336.11.6e-1461.80hypothetical protein SDJN03_29064, partial [Cucurbita argyrosperma subsp. sorori... [more]
KDP20875.14.0e-0564.58hypothetical protein JCGZ_21346 [Jatropha curcas][more]
KAE8724235.16.8e-0555.22equilibrative nucleoside transporter 2-like [Hibiscus syriacus][more]
PIN05562.11.5e-0455.10hypothetical protein CDL12_21899 [Handroanthus impetiginosus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1Q21.5e-1872.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046140 PE=4 SV=1[more]
A0A067JLI71.9e-0564.58Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_21346 PE=4 SV=1[more]
A0A6A3C4W63.3e-0555.22Equilibrative nucleoside transporter 2-like OS=Hibiscus syriacus OX=106335 GN=F3... [more]
A0A2G9GK337.3e-0555.10Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21899 P... [more]
A0A2P5QQF31.3e-0453.97Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A10G023900v1 PE... [more]
Match NameE-valueIdentityDescription
AT4G10270.11.0e-0653.33Wound-responsive family protein [more]
AT4G10265.12.8e-0472.73Wound-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 35..80
e-value: 6.4E-11
score: 43.1
IPR022251Protein of unknown function wound-inducedPANTHERPTHR33090DUF3774 DOMAIN PROTEIN-RELATEDcoord: 4..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..49
NoneNo IPR availablePANTHERPTHR33090:SF27SUBFAMILY NOT NAMEDcoord: 4..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005346.1HG10005346.1mRNA