HG10005246 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005246
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	KRR1 small subunit processome component
Location	Chr07: 804837 .. 808467 (+)
RNA-Seq Expression	HG10005246
Synteny	HG10005246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACATAGAGCAACAGCAAAATAAAACCAAACATAAGGGGAAGCATGACAAGCCAAAGCCATGGGACGAAGATCCTAACATTGACCGTTGGAAAGTGGAGAAGTTTGATCCCTCTTGGAATGAAGGTGGCATGCTCGAAGTTAGCTCTTTCTCTACTCTGTTTCCTGTGTACCGAGGTAAGGAATTTTATGTTTTTACTTTCCAATTTTACTCTCTTGCTATTACGGAGGATTAGATTGGAATAAATGAATGAATTAGAGTGTGGGTTTCTTTGAACTTGCTTACATAGTACTTCGACATCTCAATTGTCTTTAGATTAATAATTTGGTGCATTGTATTAAATTTATGTCTAGTTTGCGTACTAAATTGTGAAACAGTTTGTAGTAGTCCTACTGAAACGATTTCGAGTTACTGTGAACTTTGATTTTGTTTCAGCTGTTTTGTTTCGCCAAGTAGTTTGGCTGAAAAGGAATTATTGTTTCATGTTTAAATGTTTGTACTGTAGGCCGATATGCTTTATTTTGTGTTCTGTCAATCGGTTCTATGTCTACATGGAGGGTAGTATTGCAGTCGAGATGGTTCTGAAAGGATTTGAGGAAGCCAAAAATAACTTTTTCTTTCTAGTGCTGCGACCTATTTAGTCTATGTTTTTACTGAAAATGGTTAGGTAGCAGTAGAATAGCAAGGTTTTGTTTTCTAACTTTATGAATTTGGTAATCTTTATTGGTGGAAAACGTTCAGTACATATTGTTTTTTCAATATGCTTGTTTTTATCTTCACTTAAAGATATTTCTGCTATACAGTTGGATTGACTGTGCGCAATAATCAGATTCCAATTCTTAAAGATTTTGATTCTGCGATTTTCAGAAAAATATTTGCGAGACACATGGCCATGTGTGAAGTCTGCGCTGAAAGAGTTTGGTGTTGTTTGTGAACTGAATCTGGTAAGAGTCCATAAACTCCAGAAAGAAAAATGAAAGAGTTTATAACCCTAATGAAGGAATGTCTTTGATTCTGTAGTTTGAGTAGTTTTGAAACCAGTTGTAATTCTCATTGCATGTGTTTTAATCTCCTACTGTTGATCAGATCGAAGGATCAATGACAGTTTCAACAACTAGAAAGACTAAGGATCCATATATTATTGTCAAGGCAAGGGATCTGATCAAGCTTTTGTCAAGAAGCGTTCCTGCTCCTCAGGTAAAACAATGAGTTGATTTATTTTATGTTATTTTTCTTTTGATTTGGAAGTTTGAATATTTCTTTCACCGGTCCTGTTGATTGGTATCTTGAATTGTGTTTTTTGACCATGGTTTGTGTGTCAGGCAATAAAAATACTGGACGATGAAATGCAATGTGACATTATCAAGATTGGGAACTTGGTACGCAAGAAGGTCAGTGTCTTTTACTCTACTTATTTTATTACAGACTGATTTTATATTCTTTTTCTCTTTAGGCATTTGACTAAGAAGTTTGCATAGTTGATAGTTGCCAGCCTTTAATCTCCTTGCACATGCTCTAAGGTCTGAAGTTCATCCTAAATTCAAAAAGTCTATATCTATGGCAACCTACATAGTTAGCCTTTAATCTCCTTGAGCACGCTCTAAGGTCTGAAGTTCATCCTAAATTCAAGAAGTCCATATCTAGGGCAATCTACAGCAAAAGTCTACATGGCTCACTAATTACTGGAAATTGGAGACATTCGGATATAAATTGAAATGCAGTGTTTTATTCTTTTGACTTGAAGTTGAAAATTAGCCTGTTATTTTAGAGACTAAGTTTCAGGGTTGTGTGTGTGTGTCCCTAATCGTAATGTTGGCAAGCGTGCATTATGGCACATAATAGTTGCTTAGATGAAGGACTACCACTTTCCATGCCAATTTTCAATTCTCTGCTCTATGTGAACTTTGAAATTTGACTTTGGCCCGACCTTGATTATGATGCAGGAACGATTTGTTAAAAGAAGACGGCTTCTTGTGGGCCCAAATTCATCAACTTTAAAGGTTCATATAGCTTAGTTGATTGCTTTCCAAGATTACTAAGTTCCTCCTACTTTGATAAAGATATCTTAATTTAGCTTTCTTAGAGAGGGGCAATTGTATTTATCTAAGTCTATGCTCTATTTCTTCTCTCTTATCTTTTAATTGTTATTCTAGCACAGGCGCTTGAAATATTGACAGGATGCTATATTCTTGTTCAAGTACGTATATTTTCTTTTGGCTACTTGTTTATATTTTTCATCTCTTTCAGCCTTTCCTCTTCTGTAGCGTCAATCTTGTTCTTGTTACTGACAGGGCAACACAGTTGCTGCGATGGGTTCATTCAAAGGTTTAAAGCAAGTTAGGAGGATAGTGGAAGAGTGCATGATGAATAAAATGCATCCTGTATATAATATTAAGGTTTCTAATTTCTGTATATCACTTTATGTTCTCCTCGATAGCTCTCTACGTAACCTGGTATCTCTTGCAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTTGCAAATGAAAATTGGGATAGGTTTCTTCCCAAATTCAAGAAGTATGCCATTAAGACGTGTACTGGTTTGCTGATTTTCTTATGCTAGAATCATGTATTTATGTTTTACACAAGCGTCCTTTTCTCAGGAAAACTGTTAAACAAAAGAAGGTTAAGAGTAAACAGAAGAAGCCGTACACACCTTTCCCTCCTCCTCAGCAACCTAGCCAGTTGCAAATAGCTGCCTTTCACTTTCTGGAGGCCCAATTTGTCTATATTTATATTTCAAAAAGGAATTATGAAAATAGGACGACAATATAAGACATAATAGTTATGATGGTCAAAAATTGTAAAAAAGGAACAGGCCACAACATATTAGTGCCATATTTAATAAAGATTAATTATTCCAAATTTAGGAAGTGCTGAAATGTCTTAGAAACATATTATTTTATTGTCATTGTGACAATTTTATAGGTGTTAAACGTAGACATGTTTTGCATTCTTATTTTTTTTCTCAATGCATTCATTTCAATAAGATTTATTGACTCGATGTATTTTGCAGATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGATAAACAGGAGAAGCAAGCAGAAAAAACTGCTGAAAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGTATACATTGCTCCAGCTCGTTGATTCAGCGTATCCAATTTACTGAACTTTTTTTTTTAATTCTTTTCACTACTATACGTGCTTTTAGTGATAATTGTTTTACATCTTTCAGGAGCCACCGAAGCAGGATACGAAACTTGATGGAGATAACAATGATATAGCCGAAATGGCAAAGGCCTTGAAGGTATGATATTTTGTGTGTGGGGGGCTATATGTAATAATAACCACCGTGGATTCTCCCAGAAGATTTTTCAACTGGAAATGGTCCATTTTGTTTGACAAATTTGTTGCAACTTATGAACTTTGTTGCTTTACAGGAAAAGGCTAAGGCATTTGGTAAACGAAAAGCTGCGGAAACTATCAATCCTGAAGCTTACATTGCATCATCCAGCGATAAGCCCCATTTCAAGAAGATATCCAAGACATCGTCGTAG

mRNA sequence

ATGGAAGACATAGAGCAACAGCAAAATAAAACCAAACATAAGGGGAAGCATGACAAGCCAAAGCCATGGGACGAAGATCCTAACATTGACCGTTGGAAAGTGGAGAAGTTTGATCCCTCTTGGAATGAAGGTGGCATGCTCGAAGTTAGCTCTTTCTCTACTCTGTTTCCTGTGTACCGAGAAAAATATTTGCGAGACACATGGCCATGTGTGAAGTCTGCGCTGAAAGAGTTTGGTGTTGTTTGTGAACTGAATCTGATCGAAGGATCAATGACAGTTTCAACAACTAGAAAGACTAAGGATCCATATATTATTGTCAAGGCAAGGGATCTGATCAAGCTTTTGTCAAGAAGCGTTCCTGCTCCTCAGGCAATAAAAATACTGGACGATGAAATGCAATGTGACATTATCAAGATTGGGAACTTGGTACGCAAGAAGGGCAACACAGTTGCTGCGATGGGTTCATTCAAAGGTTTAAAGCAAGTTAGGAGGATAGTGGAAGAGTGCATGATGAATAAAATGCATCCTGTATATAATATTAAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTTGCAAATGAAAATTGGGATAGGTTTCTTCCCAAATTCAAGAAGAAAACTGTTAAACAAAAGAAGGTTAAGAGTAAACAGAAGAAGCCGTACACACCTTTCCCTCCTCCTCAGCAACCTAGCCAGTTGCAAATAGCTGCCTTTCACTTTCTGGAGGCCCAATTTATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGATAAACAGGAGAAGCAAGCAGAAAAAACTGCTGAAAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGCCACCGAAGCAGGATACGAAACTTGATGGAGATAACAATGATATAGCCGAAATGGCAAAGGCCTTGAAGGAAAAGGCTAAGGCATTTGGTAAACGAAAAGCTGCGGAAACTATCAATCCTGAAGCTTACATTGCATCATCCAGCGATAAGCCCCATTTCAAGAAGATATCCAAGACATCGTCGTAG

Coding sequence (CDS)

ATGGAAGACATAGAGCAACAGCAAAATAAAACCAAACATAAGGGGAAGCATGACAAGCCAAAGCCATGGGACGAAGATCCTAACATTGACCGTTGGAAAGTGGAGAAGTTTGATCCCTCTTGGAATGAAGGTGGCATGCTCGAAGTTAGCTCTTTCTCTACTCTGTTTCCTGTGTACCGAGAAAAATATTTGCGAGACACATGGCCATGTGTGAAGTCTGCGCTGAAAGAGTTTGGTGTTGTTTGTGAACTGAATCTGATCGAAGGATCAATGACAGTTTCAACAACTAGAAAGACTAAGGATCCATATATTATTGTCAAGGCAAGGGATCTGATCAAGCTTTTGTCAAGAAGCGTTCCTGCTCCTCAGGCAATAAAAATACTGGACGATGAAATGCAATGTGACATTATCAAGATTGGGAACTTGGTACGCAAGAAGGGCAACACAGTTGCTGCGATGGGTTCATTCAAAGGTTTAAAGCAAGTTAGGAGGATAGTGGAAGAGTGCATGATGAATAAAATGCATCCTGTATATAATATTAAGATTCTCATGATGAAGAAAGAGCTTGCTAATGATCCAGCACTTGCAAATGAAAATTGGGATAGGTTTCTTCCCAAATTCAAGAAGAAAACTGTTAAACAAAAGAAGGTTAAGAGTAAACAGAAGAAGCCGTACACACCTTTCCCTCCTCCTCAGCAACCTAGCCAGTTGCAAATAGCTGCCTTTCACTTTCTGGAGGCCCAATTTATTGATATACAATTGGAAACTGGAGAATACTTTTTAAGTGACAAAAAGAAGTCAGCAAAGAAATGGCAGGATAAACAGGAGAAGCAAGCAGAAAAAACTGCTGAAAACAAGAGAAAAAGAGAAGCTGCCTTTGTTCCTCCTAAGGAGCCACCGAAGCAGGATACGAAACTTGATGGAGATAACAATGATATAGCCGAAATGGCAAAGGCCTTGAAGGAAAAGGCTAAGGCATTTGGTAAACGAAAAGCTGCGGAAACTATCAATCCTGAAGCTTACATTGCATCATCCAGCGATAAGCCCCATTTCAAGAAGATATCCAAGACATCGTCGTAG

Protein sequence

MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQCDIIKIGNLVRKKGNTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKKKTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAKKWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGKRKAAETINPEAYIASSSDKPHFKKISKTSS

Homology

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BLAST of HG10005246 vs. NCBI nr
Match: XP_038888683.1 (KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888684.1 KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888685.1 KRR1 small subunit processome component homolog [Benincasa hispida] >XP_038888686.1 KRR1 small subunit processome component homolog [Benincasa hispida])

HSP 1 Score: 626.3 bits (1614), Expect = 1.6e-175
Identity = 332/391 (84.91%), Postives = 339/391 (86.70%), Query Frame = 0


Query: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR 60
           MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR
Sbjct: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR 60

Query: 61  EKYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVP 120
           EKYLR+TWP VKSALKEFG+VCELNLIEGSMTVSTTRKT+DPYIIVKARDLIKLLSRSVP
Sbjct: 61  EKYLRETWPVVKSALKEFGIVCELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVP 120

Query: 121 APQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GN 180
           APQAIKILDDEMQCDIIKIGNLVRKK                                GN
Sbjct: 121 APQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGN 180

Query: 181 TVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240
           TVAAMGSFKGLKQVRR+VEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK
Sbjct: 181 TVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240

Query: 241 KKTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSA 300
           KKTVKQKKVKSKQKKPYTPFPPPQQPSQ             IDIQLETGEYFLSDKKKSA
Sbjct: 241 KKTVKQKKVKSKQKKPYTPFPPPQQPSQ-------------IDIQLETGEYFLSDKKKSA 300

Query: 301 KKWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFG 360
           KKWQDKQEKQAEKTAENKRKREAAFVPPKEPP QDT+ D DNNDI+EMAKALKEKAKAFG
Sbjct: 301 KKWQDKQEKQAEKTAENKRKREAAFVPPKEPPMQDTEPDQDNNDISEMAKALKEKAKAFG 360

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BLAST of HG10005246 vs. NCBI nr
Match: XP_023511730.1 (KRR1 small subunit processome component homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 613.2 bits (1580), Expect = 1.4e-171
Identity = 325/390 (83.33%), Postives = 334/390 (85.64%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E++EQQQNKTKHKGKHDKPKPWDEDPNIDRW VEKFDPSWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EELEQQQNKTKHKGKHDKPKPWDEDPNIDRWTVEKFDPSWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WP VKSALKEFG+ CELNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACELNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GNT 181
           PQAIKILDDEMQCDIIKIGNLVRKK                                GNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAK 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQ             IDIQLETGEYFLSDKKKSAK
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQ-------------IDIQLETGEYFLSDKKKSAK 303

Query: 302 KWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGK 360
           KWQ+KQEKQAEKTAENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GK
Sbjct: 304 KWQEKQEKQAEKTAENKRKREAAFVPPKEPPKQDTTIDGDNNDIATMAKALKEKAKALGK 363

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BLAST of HG10005246 vs. NCBI nr
Match: XP_022952886.1 (KRR1 small subunit processome component homolog [Cucurbita moschata] >XP_022952887.1 KRR1 small subunit processome component homolog [Cucurbita moschata])

HSP 1 Score: 612.5 bits (1578), Expect = 2.4e-171
Identity = 325/390 (83.33%), Postives = 334/390 (85.64%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFD SWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EEIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDASWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WP VKSALKEFG+ C+LNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACDLNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GNT 181
           PQAIKILDDEMQCDIIKIGNLVRKK                                GNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAK 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQ             IDIQLETGEYFLSDKKKSAK
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQ-------------IDIQLETGEYFLSDKKKSAK 303

Query: 302 KWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGK 360
           KWQ+KQEKQAEKTAENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GK
Sbjct: 304 KWQEKQEKQAEKTAENKRKREAAFVPPKEPPKQDTNIDGDNNDIATMAKALKEKAKALGK 363

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BLAST of HG10005246 vs. NCBI nr
Match: KAG7012057.1 (mis3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 611.3 bits (1575), Expect = 5.3e-171
Identity = 325/390 (83.33%), Postives = 333/390 (85.38%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EVIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WP VKSALKEFG+ C+LNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACDLNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GNT 181
           PQAIKILDDEMQCDIIKIGNLVRKK                                GNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAK 301
           K VKQKKVKSKQKKPYTPFPPPQ PSQ             IDIQLETGEYFLSDKKKSAK
Sbjct: 244 KIVKQKKVKSKQKKPYTPFPPPQPPSQ-------------IDIQLETGEYFLSDKKKSAK 303

Query: 302 KWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGK 360
           KWQ+KQEKQAEKTAENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GK
Sbjct: 304 KWQEKQEKQAEKTAENKRKREAAFVPPKEPPKQDTNIDGDNNDIATMAKALKEKAKALGK 363

[Close]

BLAST of HG10005246 vs. NCBI nr
Match: XP_022969421.1 (KRR1 small subunit processome component homolog [Cucurbita maxima] >XP_022969422.1 KRR1 small subunit processome component homolog [Cucurbita maxima])

HSP 1 Score: 610.1 bits (1572), Expect = 1.2e-170
Identity = 324/390 (83.08%), Postives = 334/390 (85.64%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EEIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WP VKSALKEFG+ CELNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACELNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GNT 181
           PQAIKILDDEMQCDIIKIGNLVRKK                                GNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALA+ENWDRFLPKFKK
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALASENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAK 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQ             IDIQLETGEYFLSDKKKSAK
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQ-------------IDIQLETGEYFLSDKKKSAK 303

Query: 302 KWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGK 360
           KWQ+KQEKQAEKTAENKRKREA+FVPPKE PKQDTK+DGDNNDIA MAKALKEKAKA GK
Sbjct: 304 KWQEKQEKQAEKTAENKRKREASFVPPKETPKQDTKIDGDNNDIATMAKALKEKAKALGK 363

[Close]

BLAST of HG10005246 vs. ExPASy Swiss-Prot
Match: O74777 (KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mis3 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 9.4e-78
Identity = 165/327 (50.46%), Postives = 216/327 (66.06%), Query Frame = 0


Query: 9   NKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDTW 68
           NK K   ++ + KPWD D +ID WK+E F    ++   LE SSF+TLFP YREKYLR+ W
Sbjct: 15  NKNK---RYRRDKPWDTD-DIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLREVW 74

Query: 69  PCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKIL 128
           P V  AL +FG+ C L+L+EGSMTV TTRKT DPY I+ ARDLIKLL+RSVP PQA+KI+
Sbjct: 75  PHVTRALDKFGITCVLDLVEGSMTVKTTRKTFDPYSILDARDLIKLLARSVPFPQAVKIM 134

Query: 129 DDEMQCDIIKIGNLVRKK--------------------------------GNTVAAMGSF 188
            D + CDIIKIGN++R K                                G TVA MG +
Sbjct: 135 QDGVACDIIKIGNILRNKERFVKRRQRLIGTNGQTLKALELLTQCYILVQGTTVAVMGGY 194

Query: 189 KGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKKKTV-KQK 248
           KGLK+VRRIVE+CM N +HP+Y+IK LM+K+ELA DP LANE+WDRFLP+FKK+ V ++K
Sbjct: 195 KGLKEVRRIVEDCMHN-IHPIYHIKELMIKRELAKDPTLANESWDRFLPQFKKRNVARRK 254

Query: 249 KVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAKKWQDKQ 303
             K ++ K YTPFPP Q PS+L             D+++E+GEYFL  ++K  KK  +K+
Sbjct: 255 PAKIRETKEYTPFPPAQPPSKL-------------DLEIESGEYFLKKEEKERKKRAEKK 314

[Close]

BLAST of HG10005246 vs. ExPASy Swiss-Prot
Match: B3LU25 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11-1a) OX=285006 GN=KRR1 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.3e-73
Identity = 157/319 (49.22%), Postives = 204/319 (63.95%), Query Frame = 0


Query: 17  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPCVKSA 76
           H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  A
Sbjct: 5   HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 64

Query: 77  LKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQC 136
           L +  + C L+L+EGSMTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M C
Sbjct: 65  LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 124

Query: 137 DIIKIGNLVRKK--------------------------------GNTVAAMGSFKGLKQV 196
           D+IKIGN V  K                                GNTV+AMG FKGLK+V
Sbjct: 125 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 184

Query: 197 RRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKKKTV---KQKKVKS 256
           RR+VE+CM N +HP+Y+IK LM+K+ELA  P LANE+W RFLP FKK+ V   K KK+++
Sbjct: 185 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 244

Query: 257 KQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAKKWQDKQEKQA 299
            +KK YTPFPP Q P +             +D+++E+GEYFLS ++K  KK  +++EKQ 
Sbjct: 245 VEKKVYTPFPPAQLPRK-------------VDLEIESGEYFLSKREKQMKKLNEQKEKQM 304

[Close]

BLAST of HG10005246 vs. ExPASy Swiss-Prot
Match: B5VEQ2 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI1631) OX=545124 GN=KRR1 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.3e-73
Identity = 157/319 (49.22%), Postives = 204/319 (63.95%), Query Frame = 0


Query: 17  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPCVKSA 76
           H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  A
Sbjct: 5   HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 64

Query: 77  LKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQC 136
           L +  + C L+L+EGSMTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M C
Sbjct: 65  LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 124

Query: 137 DIIKIGNLVRKK--------------------------------GNTVAAMGSFKGLKQV 196
           D+IKIGN V  K                                GNTV+AMG FKGLK+V
Sbjct: 125 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 184

Query: 197 RRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKKKTV---KQKKVKS 256
           RR+VE+CM N +HP+Y+IK LM+K+ELA  P LANE+W RFLP FKK+ V   K KK+++
Sbjct: 185 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 244

Query: 257 KQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAKKWQDKQEKQA 299
            +KK YTPFPP Q P +             +D+++E+GEYFLS ++K  KK  +++EKQ 
Sbjct: 245 VEKKVYTPFPPAQLPRK-------------VDLEIESGEYFLSKREKQMKKLNEQKEKQM 304

[Close]

BLAST of HG10005246 vs. ExPASy Swiss-Prot
Match: C8Z430 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) OX=643680 GN=KRR1 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.3e-73
Identity = 157/319 (49.22%), Postives = 204/319 (63.95%), Query Frame = 0


Query: 17  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPCVKSA 76
           H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  A
Sbjct: 5   HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 64

Query: 77  LKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQC 136
           L +  + C L+L+EGSMTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M C
Sbjct: 65  LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 124

Query: 137 DIIKIGNLVRKK--------------------------------GNTVAAMGSFKGLKQV 196
           D+IKIGN V  K                                GNTV+AMG FKGLK+V
Sbjct: 125 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 184

Query: 197 RRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKKKTV---KQKKVKS 256
           RR+VE+CM N +HP+Y+IK LM+K+ELA  P LANE+W RFLP FKK+ V   K KK+++
Sbjct: 185 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 244

Query: 257 KQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAKKWQDKQEKQA 299
            +KK YTPFPP Q P +             +D+++E+GEYFLS ++K  KK  +++EKQ 
Sbjct: 245 VEKKVYTPFPPAQLPRK-------------VDLEIESGEYFLSKREKQMKKLNEQKEKQM 304

[Close]

BLAST of HG10005246 vs. ExPASy Swiss-Prot
Match: P25586 (KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KRR1 PE=1 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 5.3e-73
Identity = 157/319 (49.22%), Postives = 204/319 (63.95%), Query Frame = 0


Query: 17  HDKPKPWDEDPNIDRWKVEKFDPSWNEGG--MLEVSSFSTLFPVYREKYLRDTWPCVKSA 76
           H++ KPWD D +ID+WK+E+F    N  G    E SSF TLFP YRE YL+  W  V  A
Sbjct: 5   HNRDKPWDTD-DIDKWKIEEFKEEDNASGQPFAEESSFMTLFPKYRESYLKTIWNDVTRA 64

Query: 77  LKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQC 136
           L +  + C L+L+EGSMTV TTRKT DP II+KARDLIKLL+RSVP PQA+KIL D+M C
Sbjct: 65  LDKHNIACVLDLVEGSMTVKTTRKTYDPAIILKARDLIKLLARSVPFPQAVKILQDDMAC 124

Query: 137 DIIKIGNLVRKK--------------------------------GNTVAAMGSFKGLKQV 196
           D+IKIGN V  K                                GNTV+AMG FKGLK+V
Sbjct: 125 DVIKIGNFVTNKERFVKRRQRLVGPNGNTLKALELLTKCYILVQGNTVSAMGPFKGLKEV 184

Query: 197 RRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKKKTV---KQKKVKS 256
           RR+VE+CM N +HP+Y+IK LM+K+ELA  P LANE+W RFLP FKK+ V   K KK+++
Sbjct: 185 RRVVEDCMKN-IHPIYHIKELMIKRELAKRPELANEDWSRFLPMFKKRNVARKKPKKIRN 244

Query: 257 KQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAKKWQDKQEKQA 299
            +KK YTPFPP Q P +             +D+++E+GEYFLS ++K  KK  +++EKQ 
Sbjct: 245 VEKKVYTPFPPAQLPRK-------------VDLEIESGEYFLSKREKQMKKLNEQKEKQM 304

[Close]

BLAST of HG10005246 vs. ExPASy TrEMBL
Match: A0A6J1GLG6 (KRR1 small subunit processome component OS=Cucurbita moschata OX=3662 GN=LOC111455438 PE=3 SV=1)

HSP 1 Score: 612.5 bits (1578), Expect = 1.2e-171
Identity = 325/390 (83.33%), Postives = 334/390 (85.64%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFD SWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EEIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDASWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WP VKSALKEFG+ C+LNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACDLNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GNT 181
           PQAIKILDDEMQCDIIKIGNLVRKK                                GNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAK 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQ             IDIQLETGEYFLSDKKKSAK
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQ-------------IDIQLETGEYFLSDKKKSAK 303

Query: 302 KWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGK 360
           KWQ+KQEKQAEKTAENKRKREAAFVPPKEPPKQDT +DGDNNDIA MAKALKEKAKA GK
Sbjct: 304 KWQEKQEKQAEKTAENKRKREAAFVPPKEPPKQDTNIDGDNNDIATMAKALKEKAKALGK 363

[Close]

BLAST of HG10005246 vs. ExPASy TrEMBL
Match: A0A6J1HWB5 (KRR1 small subunit processome component OS=Cucurbita maxima OX=3661 GN=LOC111468435 PE=3 SV=1)

HSP 1 Score: 610.1 bits (1572), Expect = 5.8e-171
Identity = 324/390 (83.08%), Postives = 334/390 (85.64%), Query Frame = 0


Query: 2   EDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 61
           E+IEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE
Sbjct: 4   EEIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYRE 63

Query: 62  KYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 121
           KYL+D WP VKSALKEFG+ CELNL+EGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA
Sbjct: 64  KYLQDAWPVVKSALKEFGIACELNLVEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPA 123

Query: 122 PQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GNT 181
           PQAIKILDDEMQCDIIKIGNLVRKK                                GNT
Sbjct: 124 PQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRFLVGPNSSTLKALEILTGCYILVQGNT 183

Query: 182 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKK 241
           VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALA+ENWDRFLPKFKK
Sbjct: 184 VAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALASENWDRFLPKFKK 243

Query: 242 KTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAK 301
           KTVKQKKVKSKQKKPYTPFPPPQ PSQ             IDIQLETGEYFLSDKKKSAK
Sbjct: 244 KTVKQKKVKSKQKKPYTPFPPPQPPSQ-------------IDIQLETGEYFLSDKKKSAK 303

Query: 302 KWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAFGK 360
           KWQ+KQEKQAEKTAENKRKREA+FVPPKE PKQDTK+DGDNNDIA MAKALKEKAKA GK
Sbjct: 304 KWQEKQEKQAEKTAENKRKREASFVPPKETPKQDTKIDGDNNDIATMAKALKEKAKALGK 363

[Close]

BLAST of HG10005246 vs. ExPASy TrEMBL
Match: A0A5D3CP78 (KRR1 small subunit processome component OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00300 PE=3 SV=1)

HSP 1 Score: 608.6 bits (1568), Expect = 1.7e-170
Identity = 329/392 (83.93%), Postives = 336/392 (85.71%), Query Frame = 0


Query: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR 60
           MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVYR
Sbjct: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVYR 60

Query: 61  EKYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVP 120
           EKYLRDTWP VKSALKEFG+V ELNLIEGSMTVSTTRKT+DPYIIVKARDLIKLLSRSVP
Sbjct: 61  EKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVP 120

Query: 121 APQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GN 180
           APQAIKILDDEMQCDIIKIGNLVRKK                                GN
Sbjct: 121 APQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGN 180

Query: 181 TVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240
           TVAAMGSFKGLKQVRR+VEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK
Sbjct: 181 TVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240

Query: 241 KKTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSA 300
           KKTVKQKKVKSK KK YTPFPPPQQPSQ             IDIQLETGEYFL++KKKSA
Sbjct: 241 KKTVKQKKVKSKPKKQYTPFPPPQQPSQ-------------IDIQLETGEYFLNEKKKSA 300

Query: 301 KKWQDKQEKQAEKTAENKRKREAAFVPPKEPPK-QDTKLDGDNNDIAEMAKALKEKAKAF 360
           KKWQDKQEKQAEKTAENKRKREAAFVPPKE PK QDT+ DGD NDIAEMAKALKEKAKAF
Sbjct: 301 KKWQDKQEKQAEKTAENKRKREAAFVPPKEAPKQQDTQPDGDKNDIAEMAKALKEKAKAF 360

[Close]

BLAST of HG10005246 vs. ExPASy TrEMBL
Match: A0A0A0K7G6 (KRR1 small subunit processome component OS=Cucumis sativus OX=3659 GN=Csa_7G237820 PE=3 SV=1)

HSP 1 Score: 607.1 bits (1564), Expect = 4.9e-170
Identity = 327/392 (83.42%), Postives = 336/392 (85.71%), Query Frame = 0


Query: 1   MEDIEQQ-QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVY 60
           MEDIEQQ QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVY
Sbjct: 1   MEDIEQQHQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVY 60

Query: 61  REKYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSV 120
           REKYLRDTWP VKSALKEFG+V ELNLIEGSMTVSTTRKT+DPYIIVKARDLIKLLSRSV
Sbjct: 61  REKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSV 120

Query: 121 PAPQAIKILDDEMQCDIIKIGNLVRKK--------------------------------G 180
           PAPQAIKILDDEMQCDIIKIGNLVRKK                                G
Sbjct: 121 PAPQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQG 180

Query: 181 NTVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKF 240
           NTVAAMGSFKGLKQVRR+VEECMMNKMHPVYNIKILMM+KELANDPALANENWDRFLPKF
Sbjct: 181 NTVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMRKELANDPALANENWDRFLPKF 240

Query: 241 KKKTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKS 300
           KKKTVKQKKVKSK KK YTPFPPPQQPSQ             IDIQLETGEYFL++KKKS
Sbjct: 241 KKKTVKQKKVKSKPKKQYTPFPPPQQPSQ-------------IDIQLETGEYFLNEKKKS 300

Query: 301 AKKWQDKQEKQAEKTAENKRKREAAFVPPKEPPKQDTKLDGDNNDIAEMAKALKEKAKAF 360
           AKKWQDKQEKQAEKTA+NKRKREAAFVPPKE PKQDTK DGD NDIAEMAK+LKEKAKAF
Sbjct: 301 AKKWQDKQEKQAEKTADNKRKREAAFVPPKEAPKQDTKPDGDKNDIAEMAKSLKEKAKAF 360

[Close]

BLAST of HG10005246 vs. ExPASy TrEMBL
Match: A0A1S3BGN7 (KRR1 small subunit processome component OS=Cucumis melo OX=3656 GN=LOC103489650 PE=3 SV=1)

HSP 1 Score: 604.7 bits (1558), Expect = 2.4e-169
Identity = 327/392 (83.42%), Postives = 334/392 (85.20%), Query Frame = 0


Query: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYR 60
           MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNE GMLEVSSFSTLFPVYR
Sbjct: 1   MEDIEQQQNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEAGMLEVSSFSTLFPVYR 60

Query: 61  EKYLRDTWPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVP 120
           EKYLRDTWP VKSALKEFG+V ELNLIEGSMTVSTTRKT+DPYIIVKARDLIKLLSRSVP
Sbjct: 61  EKYLRDTWPVVKSALKEFGIVGELNLIEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVP 120

Query: 121 APQAIKILDDEMQCDIIKIGNLVRKK--------------------------------GN 180
           APQAIKILDDEMQCDIIKIGNLVRKK                                GN
Sbjct: 121 APQAIKILDDEMQCDIIKIGNLVRKKERFVKRRRLLVGPNSSTLKALEILTGCYILVQGN 180

Query: 181 TVAAMGSFKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240
           TVAAMGSFKGLKQVRR+VEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK
Sbjct: 181 TVAAMGSFKGLKQVRRVVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFK 240

Query: 241 KKTVKQKKVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSA 300
           KKTVKQKKVKSK KK YTPFPPPQQPSQ             IDIQLETGEYFL++KKKSA
Sbjct: 241 KKTVKQKKVKSKPKKQYTPFPPPQQPSQ-------------IDIQLETGEYFLNEKKKSA 300

Query: 301 KKWQDKQEKQAEKTAENKRKREAAFVPPKEPPK-QDTKLDGDNNDIAEMAKALKEKAKAF 360
           KKWQDKQEKQAEKTAENKRKREAAFVPP E PK QDT+ DGD NDIAEMAK LKEKAKAF
Sbjct: 301 KKWQDKQEKQAEKTAENKRKREAAFVPPMEAPKQQDTQPDGDKNDIAEMAKVLKEKAKAF 360

[Close]

BLAST of HG10005246 vs. TAIR 10
Match: AT5G08420.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 446.0 bits (1146), Expect = 2.8e-125
Identity = 240/380 (63.16%), Postives = 283/380 (74.47%), Query Frame = 0


Query: 8   QNKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPSWNEGGMLEVSSFSTLFPVYREKYLRDT 67
           + + K KGKH+KPKPWD+DPNIDRW +EKFDP+WN  GM E S+FSTLFP YREKYL++ 
Sbjct: 15  EKREKKKGKHEKPKPWDDDPNIDRWTIEKFDPAWNPTGMTETSTFSTLFPQYREKYLQEC 74

Query: 68  WPCVKSALKEFGVVCELNLIEGSMTVSTTRKTKDPYIIVKARDLIKLLSRSVPAPQAIKI 127
           WP V+SALKE+GV C+LNL+EGSMTVSTTRKT+DPYIIVKARDLIKLLSRSVPAPQAIKI
Sbjct: 75  WPRVESALKEYGVACKLNLVEGSMTVSTTRKTRDPYIIVKARDLIKLLSRSVPAPQAIKI 134

Query: 128 LDDEMQCDIIKIGNLVRKK--------------------------------GNTVAAMGS 187
           L+DE+QCDIIKIGNLVR K                                G+TVAAMG 
Sbjct: 135 LEDEVQCDIIKIGNLVRNKERFVKRRQRLVGPNSSTLKALEILTNCYILVQGSTVAAMGP 194

Query: 188 FKGLKQVRRIVEECMMNKMHPVYNIKILMMKKELANDPALANENWDRFLPKFKKKTVKQK 247
           FKGLKQ+RRIVE+C+ N MHPVY+IK LMMKKEL  DPALANE+WDRFLP F+KK VKQK
Sbjct: 195 FKGLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESWDRFLPTFRKKNVKQK 254

Query: 248 KVKSKQKKPYTPFPPPQQPSQLQIAAFHFLEAQFIDIQLETGEYFLSDKKKSAKKWQDKQ 307
           K KSK+KKPYTPFPPPQ PS+             ID+QLE+GEYF+SDKKKS KKWQ+KQ
Sbjct: 255 KPKSKEKKPYTPFPPPQPPSK-------------IDMQLESGEYFMSDKKKSEKKWQEKQ 314

Query: 308 EKQAEKTAENKRKREAAFVPPKEPPKQDT---KLDGDNNDIAEMAKALKEKAKAFGK-RK 349
           EKQ+EK+ ENKRKR+A+F+PP+EP   ++   K +   NDI E+  +LK K K   K +K
Sbjct: 315 EKQSEKSTENKRKRDASFLPPEEPMNNNSNANKSEDGKNDITELTNSLKSKTKELKKQKK 374

The following BLAST results are available for this feature:

BLAST of HG10005246 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888683.1	1.6e-175	84.91	KRR1 small subunit processome component homolog [Benincasa hispida] >XP_03888868...	[more]
XP_023511730.1	1.4e-171	83.33	KRR1 small subunit processome component homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022952886.1	2.4e-171	83.33	KRR1 small subunit processome component homolog [Cucurbita moschata] >XP_0229528...	[more]
KAG7012057.1	5.3e-171	83.33	mis3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022969421.1	1.2e-170	83.08	KRR1 small subunit processome component homolog [Cucurbita maxima] >XP_022969422...	[more]

BLAST of HG10005246 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74777	9.4e-78	50.46	KRR1 small subunit processome component homolog OS=Schizosaccharomyces pombe (st...	[more]
B3LU25	5.3e-73	49.22	KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain RM11...	[more]
B5VEQ2	5.3e-73	49.22	KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain AWRI...	[more]
C8Z430	5.3e-73	49.22	KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain Lalv...	[more]
P25586	5.3e-73	49.22	KRR1 small subunit processome component OS=Saccharomyces cerevisiae (strain ATCC...	[more]

BLAST of HG10005246 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GLG6	1.2e-171	83.33	KRR1 small subunit processome component OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1HWB5	5.8e-171	83.08	KRR1 small subunit processome component OS=Cucurbita maxima OX=3661 GN=LOC111468...	[more]
A0A5D3CP78	1.7e-170	83.93	KRR1 small subunit processome component OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0K7G6	4.9e-170	83.42	KRR1 small subunit processome component OS=Cucumis sativus OX=3659 GN=Csa_7G2378...	[more]
A0A1S3BGN7	2.4e-169	83.42	KRR1 small subunit processome component OS=Cucumis melo OX=3656 GN=LOC103489650 ...	[more]

BLAST of HG10005246 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08420.1	2.8e-125	63.16	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041174	Krr1, KH1 domain	PFAM	PF17903	KH_8	coord: 50..130 e-value: 3.0E-30 score: 104.2
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 44..130 e-value: 2.9E-42 score: 144.5
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 145..202 e-value: 1.0E-21 score: 78.7
IPR024166	Ribosomal RNA assembly KRR1	PIRSF	PIRSF006515	KRR1	coord: 1..147 e-value: 7.4E-65 score: 217.0 coord: 145..337 e-value: 1.7E-52 score: 176.3
IPR024166	Ribosomal RNA assembly KRR1	PANTHER	PTHR12581	HIV-1 REV BINDING PROTEIN 2, 3	coord: 2..147 coord: 146..338
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..311
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 211..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005246.1	HG10005246.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0003723	RNA binding