HG10005153 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005153
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L11
Location	Chr07: 80002 .. 81408 (+)
RNA-Seq Expression	HG10005153
Synteny	HG10005153

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCAGGCCTCGGAGAAGAAGTTATCGAACCCCATGAGGGATATTAAGGTGCAGAAACTCGTCCTCAATATCTCAGTTGGTGAGAGTGGAGATCGGCTCACCAGAGCTGCTAAGGTATTACTTTCTGCTGTACATTTTCTTTGTTCCTTTGGGTTGATTCTTGTTTCTGTTTCCGCCATTAATGATTTACTTTCCTCAGGTGCTTGAACAACTTAGCGGCCAAAGCCCTGTGTTCTCTAAAGGTGCATTTTCCCCCTTGTAGTCTCTTGACATAGATTCTGGAATGGTCTGTATGAAAATAAGAAAATTCATATTCGATGAGAAATTTAGAATCTGCAGTTGAAATTTAAACATGAGGAAAAACGAACCGTAACAGTTCATTCATGGTTGGATTTGTGTTTATGAGTTTATGTGTTTAGAATTGAAACTGAAGTTATGTTTGACAGTCATAGCTTGATATTGGATCTAATAAATCATGCTATTTTTTGTGGTTTTTTTAATTAAAAAAAATTTATTGTGGTTTATAGCGAGATACACTGTACGATCGTTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGAGACAAGGCGATGCAGCTTTTGGAAAGTGGGTTGAAAGTTAAAGAGTACGAGTTGCTTCGTAGGAACTTTAGCGATACTGGATGTTTTGGCTTTGGTATTCAGGAGCACATTGATCTTGGGATTAAGTAAGTCCTTATTCATTTTAATATCCCTTAAATTATGTTCCAAAATTTGTATGAAATTTACTGCTTAGTTCTCAATCTGTTCTGCCTGCTGAGGTGATTCTGCTTTGTATTGATATGAATGTAGTTAACTAGAAATGAAATATTAATTGGGATGAGGTGTTTGGAAATGGGGATGTTTTATTTTCCTGCTCGGTTCTCTATTGTTGAAGAATAGATAAGGATTGAAATTCTCTACAGGGTTGGGGTTGTGAGCCGGGAAGGAGCTCACCTGACCCACTGTGAATGATGTTATCCTATGTTGCAAGGAGTAGGGGCAGAACTGACTGGAACCTGAACAATTTAATCCCTACGTAAACTGATTTCGGATGGGGAGTAGTGAGTAGGGGGATATCTGATATTGCATAGATTAATCTGCCATCACTATGTTTGAAATTACCTTGTAACCGATCTTGCGTTTATGCGTGCAATTTATGATGTTTCAGGTACGATCCATCTACTGGTATCTATGGTATGGACTTCTTTGTTGTTTTGGAGCGACCAGGATACCGTGTTGGACGTCGCAGGAGGTGCAAGTCTCGCGTCGGTATCCAGCACAGAGTGACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAGGGTGTGATTCTTAACAAGTCGCAGCAAATCACTGGTTAA

mRNA sequence

ATGGCGCAGGCCTCGGAGAAGAAGTTATCGAACCCCATGAGGGATATTAAGGTGCAGAAACTCGTCCTCAATATCTCAGTTGGTGAGAGTGGAGATCGGCTCACCAGAGCTGCTAAGGTGCTTGAACAACTTAGCGGCCAAAGCCCTGTGTTCTCTAAAGCGAGATACACTGTACGATCGTTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGAGACAAGGCGATGCAGCTTTTGGAAAGTGGGTTGAAAGTTAAAGAGTACGAGTTGCTTCGTAGGAACTTTAGCGATACTGGATGTTTTGGCTTTGGTATTCAGGAGCACATTGATCTTGGGATTAAGTACGATCCATCTACTGGTATCTATGGTATGGACTTCTTTGTTGTTTTGGAGCGACCAGGATACCGTGTTGGACGTCGCAGGAGGTGCAAGTCTCGCGTCGGTATCCAGCACAGAGTGACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAGGGTGTGATTCTTAACAAGTCGCAGCAAATCACTGGTTAA

Coding sequence (CDS)

ATGGCGCAGGCCTCGGAGAAGAAGTTATCGAACCCCATGAGGGATATTAAGGTGCAGAAACTCGTCCTCAATATCTCAGTTGGTGAGAGTGGAGATCGGCTCACCAGAGCTGCTAAGGTGCTTGAACAACTTAGCGGCCAAAGCCCTGTGTTCTCTAAAGCGAGATACACTGTACGATCGTTTGGAATCAGACGTAATGAGAAGATTGCTTGCTATGTCACCGTTAGAGGAGACAAGGCGATGCAGCTTTTGGAAAGTGGGTTGAAAGTTAAAGAGTACGAGTTGCTTCGTAGGAACTTTAGCGATACTGGATGTTTTGGCTTTGGTATTCAGGAGCACATTGATCTTGGGATTAAGTACGATCCATCTACTGGTATCTATGGTATGGACTTCTTTGTTGTTTTGGAGCGACCAGGATACCGTGTTGGACGTCGCAGGAGGTGCAAGTCTCGCGTCGGTATCCAGCACAGAGTGACAAAGGAGGATGCCATGAAGTGGTTCCAGGTGAAATATGAGGGTGTGATTCTTAACAAGTCGCAGCAAATCACTGGTTAA

Protein sequence

MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQITG

Homology

[Close]

BLAST of HG10005153 vs. NCBI nr
Match: XP_004133951.1 (60S ribosomal protein L11 isoform X1 [Cucumis sativus] >XP_008438243.1 PREDICTED: 60S ribosomal protein L11-like isoform X1 [Cucumis melo] >XP_038886885.1 60S ribosomal protein L11-like isoform X1 [Benincasa hispida] >KAA0049088.1 60S ribosomal protein L11 isoform X1 [Cucumis melo var. makuwa] >TYK17475.1 60S ribosomal protein L11 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 368.2 bits (944), Expect = 4.0e-98
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QITG 185
           QITG
Sbjct: 181 QITG 184

[Close]

BLAST of HG10005153 vs. NCBI nr
Match: XP_022148025.1 (60S ribosomal protein L11 isoform X1 [Momordica charantia])

HSP 1 Score: 365.9 bits (938), Expect = 2.0e-97
Identity = 182/184 (98.91%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QITG 185
            ITG
Sbjct: 181 AITG 184

[Close]

BLAST of HG10005153 vs. NCBI nr
Match: XP_022952130.1 (60S ribosomal protein L11 isoform X1 [Cucurbita moschata] >XP_023511698.1 60S ribosomal protein L11 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.2 bits (936), Expect = 3.4e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QI 183
           QI
Sbjct: 181 QI 182

[Close]

BLAST of HG10005153 vs. NCBI nr
Match: XP_022930771.1 (60S ribosomal protein L11-like isoform X1 [Cucurbita moschata] >XP_022988964.1 60S ribosomal protein L11-like isoform X1 [Cucurbita maxima] >XP_023532023.1 60S ribosomal protein L11-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.2 bits (931), Expect = 1.3e-96
Identity = 180/184 (97.83%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QITG 185
           Q+TG
Sbjct: 181 QLTG 184

[Close]

BLAST of HG10005153 vs. NCBI nr
Match: XP_004133952.1 (60S ribosomal protein L11-1 isoform X2 [Cucumis sativus] >XP_008438244.1 PREDICTED: 60S ribosomal protein L11-1-like isoform X2 [Cucumis melo] >XP_038886887.1 60S ribosomal protein L11-1-like isoform X2 [Benincasa hispida] >KGN56659.1 hypothetical protein Csa_011743 [Cucumis sativus])

HSP 1 Score: 362.8 bits (930), Expect = 1.7e-96
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT
Sbjct: 122 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 181

Query: 184 G 185
           G
Sbjct: 182 G 182

[Close]

BLAST of HG10005153 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 352.8 bits (904), Expect = 2.3e-96
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ IT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 184 G 185
           G
Sbjct: 182 G 182

[Close]

BLAST of HG10005153 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 352.8 bits (904), Expect = 2.3e-96
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ IT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 184 G 185
           G
Sbjct: 182 G 182

[Close]

BLAST of HG10005153 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 3.0e-96
Identity = 174/179 (97.21%), Postives = 178/179 (99.44%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKKLSNPMR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQI 183
           TGIYGMDFFVVLERPGYRVGRRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct: 122 TGIYGMDFFVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180

[Close]

BLAST of HG10005153 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 341.3 bits (874), Expect = 6.9e-93
Identity = 169/180 (93.89%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKK SNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFGI
Sbjct: 2   ASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q  T
Sbjct: 122 TGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANT 181

[Close]

BLAST of HG10005153 vs. ExPASy Swiss-Prot
Match: Q0DK10 (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 6.9e-93
Identity = 169/180 (93.89%), Postives = 175/180 (97.22%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKK SNPMR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFGI
Sbjct: 2   ASEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDF+VVLER GYRV RRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNK+Q  T
Sbjct: 122 TGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQANT 181

[Close]

BLAST of HG10005153 vs. ExPASy TrEMBL
Match: A0A5A7U1I5 (60S ribosomal protein L11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003400 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QITG 185
           QITG
Sbjct: 181 QITG 184

[Close]

BLAST of HG10005153 vs. ExPASy TrEMBL
Match: A0A1S3AVK5 (60S ribosomal protein L11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483409 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QITG 185
           QITG
Sbjct: 181 QITG 184

[Close]

BLAST of HG10005153 vs. ExPASy TrEMBL
Match: A0A6J1D1S0 (60S ribosomal protein L11 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016813 PE=3 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 9.7e-98
Identity = 182/184 (98.91%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QITG 185
            ITG
Sbjct: 181 AITG 184

[Close]

BLAST of HG10005153 vs. ExPASy TrEMBL
Match: A0A6J1GKX0 (60S ribosomal protein L11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454896 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QI 183
           QI
Sbjct: 181 QI 182

[Close]

BLAST of HG10005153 vs. ExPASy TrEMBL
Match: A0A6J1JN19 (60S ribosomal protein L11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486166 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 6.3e-97
Identity = 180/184 (97.83%), Postives = 183/184 (99.46%), Query Frame = 0


Query: 1   MAQASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60
           MAQASE+KLSN MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS
Sbjct: 1   MAQASERKLSNTMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRS 60

Query: 61  FGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120
           FGIRRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY
Sbjct: 61  FGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKY 120

Query: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180
           DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ
Sbjct: 121 DPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 180

Query: 181 QITG 185
           Q+TG
Sbjct: 181 QLTG 184

[Close]

BLAST of HG10005153 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 352.8 bits (904), Expect = 1.6e-97
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ IT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 184 G 185
           G
Sbjct: 182 G 182

[Close]

BLAST of HG10005153 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 352.8 bits (904), Expect = 1.6e-97
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ IT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 184 G 185
           G
Sbjct: 182 G 182

[Close]

BLAST of HG10005153 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 352.8 bits (904), Expect = 1.6e-97
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ IT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 184 G 185
           G
Sbjct: 182 G 182

[Close]

BLAST of HG10005153 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 352.8 bits (904), Expect = 1.6e-97
Identity = 173/181 (95.58%), Postives = 179/181 (98.90%), Query Frame = 0


Query: 4   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGI 63
           ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGI
Sbjct: 2   ASEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGI 61

Query: 64  RRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 123
           RRNEKIACYVTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS
Sbjct: 62  RRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPS 121

Query: 124 TGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQIT 183
           TGIYGMDF+VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ IT
Sbjct: 122 TGIYGMDFYVVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNIT 181

Query: 184 G 185
           G
Sbjct: 182 G 182

[Close]

BLAST of HG10005153 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 336.3 bits (861), Expect = 1.6e-92
Identity = 164/172 (95.35%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 13  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 72
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 1   MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60

Query: 73  VTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 132
           VTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+
Sbjct: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120

Query: 133 VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQQITG 185
           VVLERPGYRV RRRRCK+RVGIQHRVTK+DAMKWFQVKYEGVILNKSQ ITG
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 172

The following BLAST results are available for this feature:

BLAST of HG10005153 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133951.1	4.0e-98	99.46	60S ribosomal protein L11 isoform X1 [Cucumis sativus] >XP_008438243.1 PREDICTED...	[more]
XP_022148025.1	2.0e-97	98.91	60S ribosomal protein L11 isoform X1 [Momordica charantia]	[more]
XP_022952130.1	3.4e-97	100.00	60S ribosomal protein L11 isoform X1 [Cucurbita moschata] >XP_023511698.1 60S ri...	[more]
XP_022930771.1	1.3e-96	97.83	60S ribosomal protein L11-like isoform X1 [Cucurbita moschata] >XP_022988964.1 6...	[more]
XP_004133952.1	1.7e-96	99.45	60S ribosomal protein L11-1 isoform X2 [Cucumis sativus] >XP_008438244.1 PREDICT...	[more]

BLAST of HG10005153 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42795	2.3e-96	95.58	60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2	[more]
P42794	2.3e-96	95.58	60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2	[more]
P46287	3.0e-96	97.21	60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1	[more]
A2YDY2	6.9e-93	93.89	60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S...	[more]
Q0DK10	6.9e-93	93.89	60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2...	[more]

BLAST of HG10005153 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1I5	2.0e-98	99.46	60S ribosomal protein L11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3AVK5	2.0e-98	99.46	60S ribosomal protein L11-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348340...	[more]
A0A6J1D1S0	9.7e-98	98.91	60S ribosomal protein L11 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1GKX0	1.7e-97	100.00	60S ribosomal protein L11 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114548...	[more]
A0A6J1JN19	6.3e-97	97.83	60S ribosomal protein L11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of HG10005153 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42740.1	1.6e-97	95.58	ribosomal protein large subunit 16A	[more]
AT3G58700.1	1.6e-97	95.58	Ribosomal L5P family protein	[more]
AT4G18730.1	1.6e-97	95.58	ribosomal protein L16B	[more]
AT5G45775.2	1.6e-97	95.58	Ribosomal L5P family protein	[more]
AT5G45775.1	1.6e-92	95.35	Ribosomal L5P family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031310	Ribosomal protein L5, N-terminal	PFAM	PF00281	Ribosomal_L5	coord: 11..64 e-value: 8.9E-21 score: 74.0
IPR031309	Ribosomal protein L5, C-terminal	PFAM	PF00673	Ribosomal_L5_C	coord: 68..166 e-value: 1.2E-20 score: 73.5
IPR002132	Ribosomal protein L5	PIRSF	PIRSF002161	RPL5p_RPL5a_RPL11e_RPL5o	coord: 2..174 e-value: 2.8E-42 score: 142.2
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 3..183
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 2..179 e-value: 1.7E-72 score: 244.7
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 10..175
None	No IPR available	PANTHER	PTHR11994:SF31	60S RIBOSOMAL PROTEIN L11-1	coord: 3..183
IPR020929	Ribosomal protein L5, conserved site	PROSITE	PS00358	RIBOSOMAL_L5	coord: 41..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005153.1	HG10005153.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome