HG10005152 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005152
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Pentatricopeptide repeat (PPR-like) superfamily protein
Location	Chr07: 74918 .. 75169 (-)
RNA-Seq Expression	HG10005152
Synteny	HG10005152

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAAGCTGAAACTGCCATAATAGACGGTATTCGGTTAGGGGTTCTCCGTGATGTCGTAACTTACAATACTTTGGTTGATGGATATTGTCGATTTAGTGGCATGGATGCTGCTTATTCTGTTCTTTATAGAATGAGGGAAGCTGATATTAGCCCAGATGTGATTACTTACAATTCTTTGATAGCTGGTGCAACCATGAATTGTTCATTAGAACAATCTCTTACTCTGTTCGAAGAAATGCTTCAATAA

mRNA sequence

ATGCAGAAAGCTGAAACTGCCATAATAGACGGTATTCGGTTAGGGGTTCTCCGTGATGTCGTAACTTACAATACTTTGGTTGATGGATATTGTCGATTTAGTGGCATGGATGCTGCTTATTCTGTTCTTTATAGAATGAGGGAAGCTGATATTAGCCCAGATGTGATTACTTACAATTCTTTGATAGCTGGTGCAACCATGAATTGTTCATTAGAACAATCTCTTACTCTGTTCGAAGAAATGCTTCAATAA

Coding sequence (CDS)

ATGCAGAAAGCTGAAACTGCCATAATAGACGGTATTCGGTTAGGGGTTCTCCGTGATGTCGTAACTTACAATACTTTGGTTGATGGATATTGTCGATTTAGTGGCATGGATGCTGCTTATTCTGTTCTTTATAGAATGAGGGAAGCTGATATTAGCCCAGATGTGATTACTTACAATTCTTTGATAGCTGGTGCAACCATGAATTGTTCATTAGAACAATCTCTTACTCTGTTCGAAGAAATGCTTCAATAA

Protein sequence

MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSLEQSLTLFEEMLQ

Homology

[Close]

BLAST of HG10005152 vs. NCBI nr
Match: XP_022147934.1 (putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147935.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147936.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147937.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147938.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia])

HSP 1 Score: 147.5 bits (371), Expect = 5.1e-32
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRF GMDAAYSV+YRMREA ISPDVITYNS
Sbjct: 23  MQKAEAVIIDGIRLGVLPDVVTYNTLLDGYCRFIGMDAAYSVIYRMREAGISPDVITYNS 82

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGAT NCSLEQSL LFEEMLQ
Sbjct: 83  LIAGATRNCSLEQSLDLFEEMLQ 105

[Close]

BLAST of HG10005152 vs. NCBI nr
Match: XP_031740560.1 (putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >KAE8649736.1 hypothetical protein Csa_012878 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           MQKAE  IIDGIR+GVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNS
Sbjct: 23  MQKAEAVIIDGIRIGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNS 82

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGAT N SLEQSL LFEEMLQ
Sbjct: 83  LIAGATRNFSLEQSLDLFEEMLQ 105

[Close]

BLAST of HG10005152 vs. NCBI nr
Match: XP_022973870.1 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 3.3e-31
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNS
Sbjct: 23  MQKAEDVIIDGIRLGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNS 82

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGA+ N SLEQSL LFEEMLQ
Sbjct: 83  LIAGASRNRSLEQSLDLFEEMLQ 105

[Close]

BLAST of HG10005152 vs. NCBI nr
Match: XP_022973869.1 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 3.3e-31
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNS
Sbjct: 23  MQKAEDVIIDGIRLGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNS 82

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGA+ N SLEQSL LFEEMLQ
Sbjct: 83  LIAGASRNRSLEQSLDLFEEMLQ 105

[Close]

BLAST of HG10005152 vs. NCBI nr
Match: KAA0041278.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK16076.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 144.4 bits (363), Expect = 4.3e-31
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
          MQKAE  IIDGIR+GVL +VVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNS
Sbjct: 1  MQKAEAVIIDGIRIGVLPNVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNS 60

Query: 61 LIAGATMNCSLEQSLTLFEEMLQ 84
          LIAGAT N SLEQSL LFEEMLQ
Sbjct: 61 LIAGATRNFSLEQSLDLFEEMLQ 83

[Close]

BLAST of HG10005152 vs. ExPASy Swiss-Prot
Match: Q56XR6 (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX=3702 GN=At5g46680 PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 4.5e-23
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           +++AET +IDGIRLGVL DV+TYNTL+ GY RF G+D AY+V  RMREA I PDV TYNS
Sbjct: 29  LERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNS 88

Query: 61  LIAGATMNCSLEQSLTLFEEML 83
           LI+GA  N  L + L LF+EML
Sbjct: 89  LISGAAKNLMLNRVLQLFDEML 110

[Close]

BLAST of HG10005152 vs. ExPASy Swiss-Prot
Match: P0C043 (Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana OX=3702 GN=At4g17915 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.3e-22
Identity = 53/83 (63.86%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           ++KAE+ IIDGIRLGV  DVVTYNTL+ GYCRF G++ AY+V  RMR+A I PDV TYNS
Sbjct: 29  LEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNS 88

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGA     L+  L LF+EML+
Sbjct: 89  LIAGAARRLMLDHVLYLFDEMLE 111

[Close]

BLAST of HG10005152 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           + +AE A  + IR G+L D V Y TL+DG+C+   + AA    Y M   DI+PDV+TY +
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 391

Query: 61  LIAGATMNCSLEQSLTLFEEM 82
           +I+G      + ++  LF EM
Sbjct: 392 IISGFCQIGDMVEAGKLFHEM 412

[Close]

BLAST of HG10005152 vs. ExPASy Swiss-Prot
Match: Q76C99 (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.7e-09
Identity = 29/70 (41.43%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 12  IRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLIAGATMNCSL 71
           +R+GV  +V+TYNTL++GYC    MD A  +L  M    + P+ +TY++LI G      +
Sbjct: 503 VRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRM 562

Query: 72  EQSLTLFEEM 82
           E +L LF+EM
Sbjct: 563 EDALVLFKEM 572

[Close]

BLAST of HG10005152 vs. ExPASy Swiss-Prot
Match: O04504 (Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana OX=3702 GN=At1g09820 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.2e-09
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSG---MDAAYSVLYRMREADISPDVIT 60
           M KA   + D    G   +VV+YNTL+DGYC+  G   M  A +VL  M E D+SP++ T
Sbjct: 239 MNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTT 298

Query: 61  YNSLIAGATMNCSLEQSLTLFEEML 83
           +N LI G   + +L  S+ +F+EML
Sbjct: 299 FNILIDGFWKDDNLPGSMKVFKEML 323

[Close]

BLAST of HG10005152 vs. ExPASy TrEMBL
Match: A0A6J1D2P0 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica charantia OX=3673 GN=LOC111016743 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRF GMDAAYSV+YRMREA ISPDVITYNS
Sbjct: 23  MQKAEAVIIDGIRLGVLPDVVTYNTLLDGYCRFIGMDAAYSVIYRMREAGISPDVITYNS 82

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGAT NCSLEQSL LFEEMLQ
Sbjct: 83  LIAGATRNCSLEQSLDLFEEMLQ 105

[Close]

BLAST of HG10005152 vs. ExPASy TrEMBL
Match: A0A0A0KYL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G481190 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.5e-32
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
          MQKAE  IIDGIR+GVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNS
Sbjct: 13 MQKAEAVIIDGIRIGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNS 72

Query: 61 LIAGATMNCSLEQSLTLFEEMLQ 84
          LIAGAT N SLEQSL LFEEMLQ
Sbjct: 73 LIAGATRNFSLEQSLDLFEEMLQ 95

[Close]

BLAST of HG10005152 vs. ExPASy TrEMBL
Match: A0A6J1IFW8 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472462 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNS
Sbjct: 23  MQKAEDVIIDGIRLGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNS 82

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGA+ N SLEQSL LFEEMLQ
Sbjct: 83  LIAGASRNRSLEQSLDLFEEMLQ 105

[Close]

BLAST of HG10005152 vs. ExPASy TrEMBL
Match: A0A6J1ICF9 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472462 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.6e-31
Identity = 74/83 (89.16%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           MQKAE  IIDGIRLGVL DVVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNS
Sbjct: 23  MQKAEDVIIDGIRLGVLPDVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNS 82

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGA+ N SLEQSL LFEEMLQ
Sbjct: 83  LIAGASRNRSLEQSLDLFEEMLQ 105

[Close]

BLAST of HG10005152 vs. ExPASy TrEMBL
Match: A0A1S3B4M5 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo OX=3656 GN=LOC103486102 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-31
Identity = 73/83 (87.95%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           MQKAE  IIDGIR+GVL +VVTYNTL+DGYCRFSGMDAAYSVLYRMREA ISPDVITYNS
Sbjct: 23  MQKAEAVIIDGIRIGVLPNVVTYNTLIDGYCRFSGMDAAYSVLYRMREAGISPDVITYNS 82

Query: 61  LIAGATMNCSLEQSLTLFEEMLQ 84
           LIAGAT N SLEQSL LFEEMLQ
Sbjct: 83  LIAGATRNFSLEQSLDLFEEMLQ 105

[Close]

BLAST of HG10005152 vs. TAIR 10
Match: AT5G46680.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-24
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           +++AET +IDGIRLGVL DV+TYNTL+ GY RF G+D AY+V  RMREA I PDV TYNS
Sbjct: 29  LERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNS 88

Query: 61  LIAGATMNCSLEQSLTLFEEML 83
           LI+GA  N  L + L LF+EML
Sbjct: 89  LISGAAKNLMLNRVLQLFDEML 110

[Close]

BLAST of HG10005152 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           + +AE A  + IR G+L D V Y TL+DG+C+   + AA    Y M   DI+PDV+TY +
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 391

Query: 61  LIAGATMNCSLEQSLTLFEEM 82
           +I+G      + ++  LF EM
Sbjct: 392 IISGFCQIGDMVEAGKLFHEM 412

[Close]

BLAST of HG10005152 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNS 60
           + +AE A  + IR G+L D V Y TL+DG+C+   + AA    Y M   DI+PDV+TY +
Sbjct: 332 LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 391

Query: 61  LIAGATMNCSLEQSLTLFEEM 82
           +I+G      + ++  LF EM
Sbjct: 392 IISGFCQIGDMVEAGKLFHEM 412

[Close]

BLAST of HG10005152 vs. TAIR 10
Match: AT1G09820.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 5.8e-10
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 1   MQKAETAIIDGIRLGVLRDVVTYNTLVDGYCRFSG---MDAAYSVLYRMREADISPDVIT 60
           M KA   + D    G   +VV+YNTL+DGYC+  G   M  A +VL  M E D+SP++ T
Sbjct: 239 MNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTT 298

Query: 61  YNSLIAGATMNCSLEQSLTLFEEML 83
           +N LI G   + +L  S+ +F+EML
Sbjct: 299 FNILIDGFWKDDNLPGSMKVFKEML 323

[Close]

BLAST of HG10005152 vs. TAIR 10
Match: AT1G64580.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-09
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 10  DGIRL-------GVLRDVVTYNTLVDGYCRFSGMDAAYSVLYRMREADISPDVITYNSLI 69
           DG++L       G++ D  TYNTL+ GYC+   ++ A  V  RM +  +SPD++TYN L+
Sbjct: 342 DGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILL 401

Query: 70  AGATMNCSLEQSLTLFEEM 82
                N  +E++L + E++
Sbjct: 402 DCLCNNGKIEKALVMVEDL 420

The following BLAST results are available for this feature:

BLAST of HG10005152 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147934.1	5.1e-32	89.16	putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charan...	[more]
XP_031740560.1	1.1e-31	89.16	putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus]...	[more]
XP_022973870.1	3.3e-31	89.16	putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 [Cucur...	[more]
XP_022973869.1	3.3e-31	89.16	putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 [Cucur...	[more]
KAA0041278.1	4.3e-31	87.95	putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ...	[more]

BLAST of HG10005152 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XR6	4.5e-23	64.63	Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX...	[more]
P0C043	1.3e-22	63.86	Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis th...	[more]
Q0WVK7	1.9e-10	39.51	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]
Q76C99	3.7e-09	41.43	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV...	[more]
O04504	8.2e-09	42.35	Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana OX...	[more]

BLAST of HG10005152 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D2P0	2.4e-32	89.16	putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica char...	[more]
A0A0A0KYL3	5.5e-32	89.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G481190 PE=4 SV=1	[more]
A0A6J1IFW8	1.6e-31	89.16	putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 OS=Cuc...	[more]
A0A6J1ICF9	1.6e-31	89.16	putative pentatricopeptide repeat-containing protein At4g17915 isoform X2 OS=Cuc...	[more]
A0A1S3B4M5	2.1e-31	87.95	putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo O...	[more]

BLAST of HG10005152 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46680.1	3.2e-24	64.63	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.1	1.4e-11	39.51	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.2	1.4e-11	39.51	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G09820.1	5.8e-10	42.35	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G64580.1	2.2e-09	35.44	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 21..55 e-value: 1.8E-8 score: 32.0 coord: 56..82 e-value: 2.6E-4 score: 19.0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 18..64 e-value: 3.6E-13 score: 49.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 19..53 score: 12.221907
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 54..83 score: 8.911594
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 3..83 e-value: 4.6E-19 score: 70.5
None	No IPR available	PANTHER	PTHR47932:SF33	OS02G0793200 PROTEIN	coord: 1..83
None	No IPR available	PANTHER	PTHR47932	ATPASE EXPRESSION PROTEIN 3	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005152.1	HG10005152.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding