HG10005134 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005134
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionRNA-binding protein 48
LocationChr08: 23067607 .. 23078695 (-)
RNA-Seq ExpressionHG10005134
SyntenyHG10005134
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGCAACCGGTTCGGATGAAGGCTGTGATCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTTACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGCGCCGCCCTTCTAATTACCCCCGTCGTCGGCACCTACACGTATTTTTTTTTTTTATCTCCTCGTTCCTTATTTTTCTTATTTTTGAAATTTCGAATTTAGGGTTTGCTTGTCGATTGGTTTCCTCCTTTCATATTTCAAGCTATTATCATTTAAAAAAAAAAAAAATCGAGTCATCATTTGTTTCTCGATGAGCTTGGTAACACTTGGTTGGGTCCAATTTAGATGAGATTTTATATCTTAATCAGATTCAAAGTGGAAATGCATAATTCCACCGACGTGGAATTCTTGTCATGATTTGGTCTTTTCTGGAATTAGCCTTGAGATAAAAAATGAAATATTTCCCCCAAAGCTATCATATTCGAAATATTCCCAAATGCATTTCTACTGGAACTGAGGGCAAATATTTAGATAGATTTCATCTTATTGCGCATAGAGGTTTGTTGGATTGTTTAATATTTGGAATGGAATAGAAAGCTCTGTGTTTGTTATTTATTTTATCATAAGTATAGGCGTTGCTTCACTTGACTGAAATTGTTCCCATGTCATGTAAATCAGATTTTTAATCACTCTTGCCCCGTCTGTGTATAGTTTTAATTGCTTTAGTCTGTAATTAATTCGTGCATTTTACCACTAAAGAGCAAAATTAGTTCTGTAGTGCATGGGGGGGAAGTTATAATTTTTTCGATATATTATAGAATAGACATTAAGAGGCACCATCCCCTCATGCAAGATTGAGAAAATTGGATCCGGGCAAGAGGTTTAAAAAACAATCTAAAACTCATTGGATGATAACGTGATGACTAATTCATGCTTTGTATTACTGTTATTTAAGTGAGACGTAAGAATAACATCTTTGTAGCAGAATGATGAAATGGGCATTACCATGCATGAGGAAATGTTATATTTAAAAAATTTGAGCACTAGATGGGAATGGGATGGTTGGATTATTTTTATTTTACTTTCTAGGAAGCTTTTCGCCTTCCTCGCCTTTCTAAAAACAGAAACCAAAAAACAAAGTAATTATCAAACGAAGTCTAGAATTTTCATTTTCATATGAAGTGTGCATAATGCATCAACATATCATGCGTTGTTAGTCTTAGACAAGACCTAATTTTTTATGGATGTTGTTTTTTCCTTCTCTTTTCTTAAACTTTGATTGAAGTATCGTTTGCACTACATGTATAGGATAAATGACCTGTAATAGTTGATTGATTGATTGGTGGAAAATGCCACTGTGGTTGATGAAAATGTGGAAGTAAATCTTTTTGTAAACTTTTTTTTTCCCTTCTTTGGTTCTTAATGTTGATCTGCCACGCATTGAAGGCATCATGTCTGCAAATGGATGCAGGTACGCACAGCAGTACAAGGAGAATGAAAAGTTGTCTCACAGGTACTGAGCGGCTTGTCCTGGATATGCCATCCATCTACTTGAAGAACTTTTGAACTTATGACTTTTTCGTTATGCAATTGGAGCTCTGGTTTCTTAGACTATGAGGGTGTGCTTTTATTTTGAGGAACATTTTCTCGCTTGTTTGTTGGAATAAATTACAACATTTTTTGTCATGTGAAGACTATTATAAAAAGATCAGTGTTACGTGCATTGGAATGGTGCTCCTCCTGCACTCTTCTCGAAACCAACCAAACTTTAGACTCCGATTATATTCCATGATATCAAAGTTTGACCAAAGCCGAGGACATGGCCACCCTATTCATCTTTTCTCCTTTTCTACTCTTAGTCATTAACTTCATCCTCTTGATTGTTTTCCCAATTCGTAAAAATGGATACACTCGCATTGCATACGGATGGAAGGGATACAATAGAGCATTAGGAGGTAAAAAAATTTAGATTCTGTTTTATGTTTTAATTATGTGTTTGGTAGAGAATCTGGATTTTATTTTTTAAAATTGTTTTTTTGATTCTGTGCAAATTTTAAAAACAACATTTTTATGTTTTCATTTTATCTCGATTTTGAATTTTAAACTTTAAAATGTAGAATTATATTAAATAAAAATAAAACATTTAGAAATATAATATGTCGGGTTATAAATTCAATTTATTTTTTTAAAAAAATATATAATGTATTATGTAATGTATTTATAAATTATATAGTATTACAAAATAATAAGTATATTATTTTTTCTTAACATAAATTATCTTCATAAATAAATTAATAATGGTTTATTGTCAATTAAATATTGGTAGACAACTATAATCAGTTTTATGATTTACAAATATATAGTATTAAACATATTTTAAGTAATAATTGTTTAAATTAGAATTCAATTTCTGAATATGTTATCAAATACATTTTCAATGGATCTTTTCAAATTCTCTTGAGTTATTGGTGGGATGTCATTTTGAAAAAGTCAAATTTGTCCTAAACTTATGAGATTATGTCATTTTTTATTATATCAAATCAGACCGTGTTGTTTACCCTTGATTTAATTTTTGTCTATTTGCCCACTAACATGATTTTTTTCTGTTATCAATTATATTTTTAATAGATACAATAGTTTAAGAAATATATATTTATGTGACTTTTTCAGACAAACTAAATACCAAAATTATAAAACACATATGGGGTCGTGTTCTTACTAACTATGAACATGGATTCTCGAAGCTAAGTCCCCAACACCTCTTTAATCACTTTTCAGTCACTTTCTTTTGTCTCGAAAGAAAAAAAATTGAAAAATAGGACAATGAGGATTAATATAAAAGGGTATTTTCAAATTTAGCAATTTTTTTTTAATTTACAAATATAACAAAAAAATTTAAATATGGTTTCTATTTTTAATTATTCTAATTTTACTTTCATTTGTGGTTTTATATTTAGTATGTAGTCGACTAATATACTTGATTTTTTTTATATTAATAAACTAATATACTTTATACCAAGTATATAATTTATGGAACGGATATATCATGATTTTAATTGCGTTGGAAGTTGTTTTTGTTTTTTTGTTTTGATATGGAGTTGTTTTCATTCGATGGTATGATTTAGGTTTTGAGATTGGTATTTTTTTTTATGTATTTAGATCTTTTAATCTTATTTTGATGGTATATCTTGATTGCATTAATTGTGTCAACTACTAAATATAAATATATTAGTCAGTGTATACTATTTTCAATTTTTTTATTTGATTTTGATGGGAAGTAAGTTATATTTAATTTGGTATATCAATTGCATAATGTATGTATTTCATATTTGGTATACTGGTTGATTGATAAACTAGATTTAGAGAGAGAGAAAAAGCATATCAACAATATTGTTGTTGATATATCAAGTATGAAATATATCATTCAAAATGACATATTTAAAGTATATCATTGGTATTTTAATTTTTACATTAGTACAAATTCAAAATGCATTTCAAGTATATCATTAGTGTTTCGATAGTGTATATCATAATTCGTTCAATGCAATACTAAGTGTTACATTTGTGTATCAGTCATTTATCGGCACTCATTCGAAATTCATTTTGATTTTAACAGTGGTGTATTAATAGTATATTAGTAATCATTAAAAATGCATTTCATGTATATCATCGGTGTATCAGTAGTATATCAACGCTTATTATAAATTTGTTTTCAAGTCTAACATTGGTGCATCAACCGTAAATCAATTACATTTATTCTAAATTAAATTTTAAGTGTAACATTGGTGTATTAATACAATATCGACATCAACTAAAAATTCATTTTAAGTATAATATTTGTATAGCATCAATATACCGGTACTTCTTAAAAATACACTTGTTCTAGTATATTAATAGTAAATAACCACCGGTTCAGAATCCAGTTTCATGTGTAACATTTGTGTGTAAATAATTTATGAACATACATTCATAATGACTATTGAACGTAATATATGAAAAGGCCAGCACTCACTCTTCAGAAATTAGTATATATTGTAACGACCCGACTTTCTAGAAGTCGTTACTTCATGCATGCATACATTTCAAAACGACACATTTCGTATATTTAACTAAAATAAAAGAAATTTATCAAATAAATAACTTCATTAAATTTAAATAATTAAAAATATTAGATCGGGGTACCCCTAAAAAAATTATATAACCAGAACGGTGAGTTTTGCATAAAACCTCTAAGAATGCAAAACTAAAATTTCTAATTTAAACATTCAGATTTGGATTTAACAACATGAAAACATAAAAATATGAGCGGAAGCTCCCAATGGCACGGTCACGGATTCTTCCTGTCATTCGCCTGTCTGTCCTTGTCTTTACCTGAAATCCATAAAATTGTAACCGAATGAGTATAAAACTCAGTAAGTAATCCCACTGCCGGGATTTCTAGATCTGTAGTCCAACTGCCCTGTCACCATGCCTAGCGGCTTGAGGGCACGCCGTCAATGCTGGTGTAAGCCTGATGACCCACACCAGTGAACATGGAGGTGAACCCGTCGGTCCACACATGTCTAGTGGCCTCATGGCACACCGTCGAAACTGGAGGTGAACTTGAGAACCCGTCGGTCCACACAGGTCTAGTGGCCTGATGGCACACCGTCAAAAACTGTTTTGAGGTGAACTTGATGATTCAAATAATAATATAGCATGGGACAACGGGCGTTGGCATCGGATTCAATCATACATAGCATAGGTAAATTCTCAACTGATAAATTCACAACAGTAGATAAATCATAAAGTAGCCAGACAAATCATACATGCAAACATGCCAATAGCCAAATAATACTGTAAAGCTGTGATTTATATGCCAATAGCCAAATAATACTCTGAAGCTGTGATTTATATGCCAATAGCCAAATAATACTCTGAAGTTGTGATTTATATGCCAATAGCCAAATAATACTGTGAAGCTATGATTTATATGTCAAATAATACTGTCAATGGCCAAATAATACTGTGAAGCTGTGACCTGCCACTAGAATCACTTACCTTGAAATAAGTGTAACAATCGCGCTCAGAAATTCCCTGTGTACCAATTCCAATCCACACCAGCGTTATGACCCACAACGGTTGTTGCCTAAAATCCACAAAAAAATAATAATAATACGTTGACGCCAAGGCTTGTTGAGCGTAACCAAAACTTTAGAAACCCCAAACCTAACACAAGATCAACATTAGAGATTAACCAAATTTTTCGATAGTAAATCAAATAACCAATGGAGACCAAAATCCCAAAACTCACCCAATTTTACAGGTTCTGTTCGGCAATGATTACGGACACATGAGAGCTTAAAACAACGATCCAATCGTTTAGAGAATACGATCCGACGGTTGAAACTCCAAAAAAACGAAAATTTTCTAGGAGCTGTCGCTGAAAAACCGGACTGCACTGCCGTTTTTCCCATTCTCCATTTTTCGGTGTATTTTTCTCCCTCTCTAGTCACTTAATAATATATATATACGATCCCAAACCCTAATTCCTTAATAAATTAGGTATATACATATTAAATTTCTTAAAAATTCAAAATAATACCCAAATAATTTAAGATAATTAAATTAAAATTACTTAAAATTTTGGGTTGTTACATATATATATATACTCGCATACCTGACAAATTATTTTCTCAAACATTCTTACAAAACGTTTGCGAAAACCTTTTCCTTCAAATCCTAGAAACGGTGTGGAGGTTGCGAGAAGCACCCGGTGTGCCGATGATCCGAATTTGAATTGACTGACTTGTTCCTGAGCAAGAACAAGTGCCGCACAATCGTTTGGTGAAGTGCGATTGTGACAGTTGGTATATAATTCTACACTTTACCCTTTCTATTTGCAATCTAAAATAATTTTATTGTTTATCAGACCGCCCTAAAAATTTTCTATTTATTTATTTATCTATTTTAAGTACCAAAAGAGTTAAAATTCTATTAAGAAAAAAATGTATGAAAAGTGCGATTGTGTGACCATCTCCCTTAGATAATTGGAAATCGGAAATCGGAATTCGGAGAAAGACGAGTAGTTCGGGGATGCCTCGCTTTACAGACGACCCCCCTGCGGTTCGCGTCTATACGGTTTGCGATGAGTCGAGGTTCACTCCGCCTCTGTAATTTCTCCCCCGCTGAATCAAAGATCTATGCGGCTTATATTACATTGTTCATTGTGAAATTCAACAGGTATTTGATTGTGAGGAACGTCCCAGCATTGGGTTGTGGAGATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACCTTGAAGAGTATTTCACTTCTCGTTTCCGTTCTTTCTTCTATACTCATCTTTACATGTTTTTTTTTCCTTTAGCGTGCCTCAAAGCATTTGATTCTTTTCTAATTCGTCAGAATTTTACTATAGATTCTTTTGGGAGTGGGAGCTGTCCACCCATCCAGCAATTGCATAATAGTTCTTTAGTCGGTGGTGTCTCATCATATGGTTGCTTCATGTTTCCCCTGTTGGATTAGTTTATGATAATTTCTTATGCCTCTCTTCTGAATATTCAACACCTCTTATGCCTACATATTTTCCTTTTATCTTATTTTATACTCTGTCAGGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCACCAATGCCAGGTAGTTGCAGCTTTGTTCTGATTTTCTTTTGTTTTAAAGAATGCGTTATTGTTCCCCTGAGTTTGAACCATAACAATTTAACTTTTAGGTTTGCAAAAAGGAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTGTTAGCACGATTGGATTGTAAGTTAGGCTTTGGCATATGTTTTTTTGTATGATAGGAAGATGTTGCTTTAGGTACATCTGGAACGTATCAACTTCAAAATCCAATACATCCACATTATAGTAGGGAAATGGTGTTTCCTTCCAGTAGTTCACTTTTAAGGATGTTATAACTTTTTTTTATCAGCTGGAAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGTTCTCATTATACTCTTGAACAGAAGAACTCTCTTGAAAAGAGGTATAAGCCAAATGAAAATTTGTAGTTCCTCCAAACTCGACATGTTTGTTTAAACTTTCTTTCTTTGGTAGGAATTATGGAGACACAGCACTCATTTCCAATCCACATGTTTCTCAAATAACAAGAGTTTCCTCCGACCAGGTCTGTTATCATAGCTGTTTTCATGTCATCTTTTGTTATATTTATTAACAATGCTAGGAAACAATTATTCTGTGATCTTTTAGTTTATGGTTTCTGTTGTACATGATGATATTTGAACATAGTTCCAGCATGTGCTGCAATATGGGTACAAGGAGTTCCATCCAACAGATTGCACGATTGCTTTGAAAGGCCAATGCAATGTGATAGGTTGCAAGCACAAAATTAGGAAGTTAGATCTCTTTATTTGTTATGTTATTAGGCACAAAAATGCTGAGGCATTGGAGAAGTCTAGACTCTCCTAACCATCTGTGAGAGTACTAGTTAGGGATATATTGGGAATTTTAGTAGGATGGTAGAACAGGGATAGTGGTATTTAATTAGTAGTGTCATGGTTATAAATAAGGAGAATTGGGCATCTTAGAGGGGGAAATGATATTGGTATTGTCCAGTGTAGGACTTTAAAGAGAGACATAGTCCTTTCAAAAGGCTACAAATATTGTAATTTCTTTTGATATTGCAATCTATACTCCTATCTTTGTGTTTTCTATTGTGTTCCCTGTTAGGAGAATCCTAACACCATCCTCCTGATTTTCCGTTGTTTCCTTGTACTTTCCTTGCCCTTTTACTGGTCTGTTCAAATAAAATAGTGGAGTGATCTGCAATCGACATAGTCTTATCAACGAGTTTTGAGACTTTTGACTTCAAATATGTCTTTTGTATCTTAGGTCAAATTTGTGTGTCAAAAAGATATAAAACAAACCATGCCATTTATTTAACTAAGGATCACTAAACCACTTGGCATCACATTGGAAATTACCCGAAAATCTATATTTAAATCAAAATTCTACCCTAGGCTCCTCCTCAAAATTCACAGTCGGAGGTATTCATCAATGTTGACTACCTCTTTAAATTATCTTTAGAATTATTTTCAATTTCTTGAAATTTCATAGACTATGGTACAAATTGTATCATATCAAGGAGGGCAGTAGACTCCTATCTCTGGGTAATGAAAGAAGGTTGAAGGGGCTTACCTTTAGGTAATGATGCCTTGCATCTTAAACGTGACTAAAAAAAAATAAATAAAAAAGAAGAAGAATTTGTGGGCTCCTTGGGCTGGAGGATCTTGGAAATCAACTTGGCCTTTTATCCTTGCTATCAGAATGGTCGAAGGTTTAGATGACCGATATGTATCTCTAGTCTTTAGGGTTTCTTTAAAATATCTGTTATAATCTCGCTTTAGAGAGAGAGAGAGAATAGTAATCAGGTTCACCTTCATATAGTAATTATGACAGAAACGGAGGAAATAAGTCCTTGCCATTCGTTGTTGTCAGACTTCTTTATTGTTAGTCGAACTTTATTTTCTTTTGCCCCTTCCCTTGGAGTCAGGGATTTGGTGATATCAAGTGAGGAGGGGTGGAGAAAGGGTCCAACTAACCTTGAAGAATTGAGCATGATGCAATGGTGACTTTACGTTGAACTCGGATTTGAAGATTTGTAGTATAGCTTACTCAGGCAGATTGTGCCATGAGATTAGTGGGGTGCATGTGAGTTGGCCCGAACACTCAGGATATTAGAAGGAAAAAAAAGATAGTGTGGCTTAATGTCCTTGTAGAGCATACATGCATGCATATGTACACACACATTTACACATACATGAAGCAAAACCTTGGTGTGGATCAATGGTGCAACTGAATCGGTATTAACCCAGTGGGTGGGAATTAGGGGTAGGGGCCTTGGTTTTCTTTAGATGAAGCTAGAGCTTCTTGGTGGCTAAATGGTGTGGAACGCTGTCTGAAGTGAAGTCTGTTTGAGGACATGGTTTTGCATCCGAGTGTGGAGAAAAGAATCTTTTTGGTGACAGGTGAACAAGCCAAAGATGGAGGTGATGAAAACAATATTTTAAGAAAGAGATTGTTGTAATCACTCCACCCCCAACATCTCAACTCCATTCTTCGTCATTTCTGGTCCTTCCTCTTTAGAAACAACCAAGAGCTTTAATATCAGATTAGTGCAATAAGTTTTTGTGATTAAGTCAAATTTATCACAACGGGAAACCACCAAAACTCTTTGAACTCAATTCGTTAATTTATAAAAAATTTCCACGATAAACCTAGTATGGGCATTTAACTTGTCTAAAAGATAAGAATAACTTATAACCTTGAAACACTAATGGACTAATCAATAGAATTAACTAGCTGACATTAACAATTTGACTTGGTGAGTGGGATAATATTGTTCTTTCGGTTGCAACTTGATCTACAAAATTCTTCCTTTGTGTTAATTATTTTAACTTCCTGTATTGCATTTAATTGGCACTATTTCATGTAACTCTTTAGCCAAAATGTGCGTAGCTCAATGGTAATTAGCACGACCTTCTGTTGGAATGTCTTGTATCTATTATCTGGTGCTTTGAACGACCAAGTATGTTTTTTACCCTAGGGTTTAGAGAATTGCACTATATTAACCCTCTAACCCTAGAGGCGCCTCTATTCTGTATTCTGTATTATTCTCTCTAATAATAAAACTATTCTCCCTCTGTCTATGGATGTGGCTAACACACTATTAGTGAACCACGTAAATCTCTGTGTCGATTCTCTACTATTTTACGTTTTTCTGTTTACAGTTTTTGTCATTTTTTTGTCGTTTTTTCAATTTTTATTAATCCAATTTTTTTCGATTTTTCTTTTTTATTAGACTAGTCATAGAATTATTTGTTTCCTGCACTTACTATCTACTTTCTTTCTTGTCGTAGTAGTTGATTGCCTCTGTAGACATCTAGCAAAGGGCTTACAAATAATATATTTCTCTCATTATGTTTCTGCAATAAGTTTTTGAAAGGTAATTTTGTTCTATCACATCTATGATTATTGGGTTGCACCATCTACTCAAGGAGTGCAAACGCACGGTTTACCAAGTATTCTAGATCAACTACTCTAGGGGAGACCATATTATATGCCCGTGTATGCCTGTATACTTTTCTGATTAACACACTAGTTGGTTGCAGTTGCAGTTATGTTCGGTATACTTTCATTTTTTTCAGTTTCAGGTTATTAACAATTGCCTTTTTTTCCTGAAATAAAATTTTAGTCTTGTTTAGAGGAGTAATCTTTTTCTGTAGGACCTTGTGGCTTGGTTCTCGATTTTCTTCCTTCGGTTTTTGAAAAGTACATTCCTTCTTCAGGAAGTTTTATTTCCCTTTTGTTAGCTGTAGAGCTGCGAAGTCTTTGGTTATCTTTAGTGAATTTTGTTTGTCCTATTGATTTTTTAGATGATGTACATGTCTTAATGATGTTGGTTGGCCCATTGTCACTAGGTTGGGTCAAGGTAGAGAAGGTTAAAGGGACATTCTTGATAATGGCTTTTGAATCTTCTTGTTTCTGGGTGAAGAGATGGATGGATTGAATGTTTGGGGACGTTACTTCTTTTCTATTTTTATTCTTGTCCTTGTTGCGTAGCCTGTTTTTTTTTTTTCTTTTCTTGGGTGGCTGAAAATGTCACTTTTCTCTTGATTACAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGGTATATAGAATTTATATTCCTATGATATATTCTCTACATTTGAGCGCATTATAATTTAAACACTGCTTATTAACTTTGTGTTTTAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCCGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAA

mRNA sequence

ATGGGGAAGCAACCGGTTCGGATGAAGGCTGTGATCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTTACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGCGCCGCCCTTCTAATTACCCCCGTCGTCGGCACCTACACGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCACCAATGCCAGGTTTGCAAAAAGGAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTGTTAGCACGATTGGATTCTGGAAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGTTCTCATTATACTCTTGAACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGACACAGCACTCATTTCCAATCCACATGTTTCTCAAATAACAAGAGTTTCCTCCGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCCGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAA

Coding sequence (CDS)

ATGGGGAAGCAACCGGTTCGGATGAAGGCTGTGATCTACGCTTTATCGCCGTTCCAGCAGAAGATCATGACAGGGTTATGGAACGACTTTACCGGCAAGATTCACCATAAGATCTCCGAGAACTGGATCAGCGCCGCCCTTCTAATTACCCCCGTCGTCGGCACCTACACGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTTCATTTGGTCACCAATGCCAGGTTTGCAAAAAGGAAATTGGATGAGTTTGTTTTCCTTGGTAATCGGCTGCAAGTCTCTTATGCGCCTGAGTTTGAAAGCTTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGACGAGAAGTGTTAGCACGATTGGATTCTGGAAGACCAAGAGGATCTGCAGTTAGTTCAACAACCGCAAAGCTTACAAATCCTTCTCGTTCTCATTATACTCTTGAACAGAAGAACTCTCTTGAAAAGAGGAATTATGGAGACACAGCACTCATTTCCAATCCACATGTTTCTCAAATAACAAGAGTTTCCTCCGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCATCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAAGCAGCGAACATCTGCAAGCTGGACCCGCGAGCAAGAAGTCACGTATGGACAATAGGAGAAGAATCTAA

Protein sequence

MGKQPVRMKAVIYALSPFQQKIMTGLWNDFTGKIHHKISENWISAALLITPVVGTYTCKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Homology
[Close]
BLAST of HG10005134 vs. NCBI nr
Match: XP_004142975.1 (RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical protein Csa_018618 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 1.7e-88
Identity = 173/177 (97.74%), Postives = 175/177 (98.87%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK
Sbjct: 82  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 141

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LEVRRREVLARLDSGRPRG+AVSSTTAKLTN SRSHYTL+QKNSLEKRNYGD ALISNPH
Sbjct: 142 LEVRRREVLARLDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKRNYGDAALISNPH 201

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Sbjct: 202 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 258

[Close]
BLAST of HG10005134 vs. NCBI nr
Match: XP_038884635.1 (RNA-binding protein 48 isoform X1 [Benincasa hispida])

HSP 1 Score: 334.7 bits (857), Expect = 6.3e-88
Identity = 172/177 (97.18%), Postives = 174/177 (98.31%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFHLVT+ARFAKRKLDEFVFLGNRLQVSYAPEFESLLDT+EK
Sbjct: 50  CKPMDAEECDEFTDVYFVKFHLVTSARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTEEK 109

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LEVRRREVLARLDSGRPRGSAVSSTTAK TNPSRSHYTLEQKNSLE RNYGDT LISNPH
Sbjct: 110 LEVRRREVLARLDSGRPRGSAVSSTTAKRTNPSRSHYTLEQKNSLETRNYGDTTLISNPH 169

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Sbjct: 170 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 226

[Close]
BLAST of HG10005134 vs. NCBI nr
Match: XP_011649485.1 (RNA-binding protein 48 isoform X1 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 4.1e-87
Identity = 173/178 (97.19%), Postives = 175/178 (98.31%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK
Sbjct: 82  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 141

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEK-RNYGDTALISNP 177
           LEVRRREVLARLDSGRPRG+AVSSTTAKLTN SRSHYTL+QKNSLEK RNYGD ALISNP
Sbjct: 142 LEVRRREVLARLDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKSRNYGDAALISNP 201

Query: 178 HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Sbjct: 202 HVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 259

[Close]
BLAST of HG10005134 vs. NCBI nr
Match: XP_008444339.1 (PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo] >KAA0061081.1 RNA-binding protein 48 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-86
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEK
Sbjct: 50  CKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEK 109

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRS+YTLEQKNSLE RNYGD ALIS+PH
Sbjct: 110 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPH 169

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           VSQ+TRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 170 VSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]
BLAST of HG10005134 vs. NCBI nr
Match: XP_022997621.1 (RNA-binding protein 48 isoform X1 [Cucurbita maxima])

HSP 1 Score: 322.0 bits (824), Expect = 4.2e-84
Identity = 163/177 (92.09%), Postives = 169/177 (95.48%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+FESLLDTKEK
Sbjct: 50  CKPMDAEECDEFTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEK 109

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LEVRRREVLARLDSGRPRGSAV+S T K TNPS SHYTLEQKNSLEKRNYGD AL SNPH
Sbjct: 110 LEVRRREVLARLDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPH 169

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQS SEHL+AGP SK+SR+DNRRRI
Sbjct: 170 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]
BLAST of HG10005134 vs. ExPASy Swiss-Prot
Match: Q9SG91 (Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-1 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 6.2e-22
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDFTGKIHHKISENWISAALLITPVVGTY 57
          MGKQPV++KAV+YALSPFQQKIMTGLW D   KIHHK+SENWISA LL+TPVVGTY
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTY 56

[Close]
BLAST of HG10005134 vs. ExPASy Swiss-Prot
Match: Q9FLB7 (Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=UCRQ-2 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.9e-21
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDFTGKIHHKISENWISAALLITPVVGTYT 58
          MGKQPV++KAV+YALSPFQQKIMTGLW D   KIHHK+SENWIS  LL+ PVVGTY+
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISTILLVAPVVGTYS 57

[Close]
BLAST of HG10005134 vs. ExPASy Swiss-Prot
Match: P46269 (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 9.0e-21
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDFTGKIHHKISENWISAALLITPVVGTYT 58
          MGKQPV++KAV+YA+SPFQQKIM GLW D  GKIHHK+SENWISA LL+ P+VGTY+
Sbjct: 1  MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYS 57

[Close]
BLAST of HG10005134 vs. ExPASy Swiss-Prot
Match: A4FVJ7 (RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.6e-12
Identity = 44/129 (34.11%), Postives = 70/129 (54.26%), Query Frame = 0 

Query: 59  KPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKL 118
           +P+D    ++FT+VY ++F  +T+AR AKR  DE  F G +L V YAPE+E++ +TK+KL
Sbjct: 81  RPLDEYPAEQFTEVYLIQFQKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKL 140

Query: 119 EVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPHV 178
           + RRR V           +  S   AKL +  ++    E  +S + R      +  NP  
Sbjct: 141 QDRRRYV-----------NWASQNAAKL-HSQQAEVNTESSSSTDTRTAEAPIMQKNPEE 197

Query: 179 SQITRVSSD 188
           ++   V+SD
Sbjct: 201 ARRENVNSD 197

[Close]
BLAST of HG10005134 vs. ExPASy Swiss-Prot
Match: Q5R4U2 (RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-10
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 61  MDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEV 120
           +D    ++FT+VY +KF  + +AR AKRK+DE  F G  L V YAPEFE++ +T++KL+V
Sbjct: 78  LDEYPAEDFTEVYLIKFMNLQSARAAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQV 137

Query: 121 RRREVL 127
           R+  V+
Sbjct: 138 RKAYVV 143

[Close]
BLAST of HG10005134 vs. ExPASy TrEMBL
Match: A0A0A0LQL2 (RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 8.0e-89
Identity = 173/177 (97.74%), Postives = 175/177 (98.87%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK
Sbjct: 82  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 141

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LEVRRREVLARLDSGRPRG+AVSSTTAKLTN SRSHYTL+QKNSLEKRNYGD ALISNPH
Sbjct: 142 LEVRRREVLARLDSGRPRGTAVSSTTAKLTNQSRSHYTLKQKNSLEKRNYGDAALISNPH 201

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI
Sbjct: 202 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 258

[Close]
BLAST of HG10005134 vs. ExPASy TrEMBL
Match: A0A5A7V5K4 (RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002210 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 7.5e-87
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEK
Sbjct: 50  CKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEK 109

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRS+YTLEQKNSLE RNYGD ALIS+PH
Sbjct: 110 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPH 169

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           VSQ+TRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 170 VSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]
BLAST of HG10005134 vs. ExPASy TrEMBL
Match: A0A1S3BA34 (RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 7.5e-87
Identity = 169/177 (95.48%), Postives = 174/177 (98.31%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEK
Sbjct: 50  CKPMDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEK 109

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRS+YTLEQKNSLE RNYGD ALIS+PH
Sbjct: 110 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPH 169

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           VSQ+TRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 170 VSQMTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 226

[Close]
BLAST of HG10005134 vs. ExPASy TrEMBL
Match: A0A6J1K7Z4 (RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 2.0e-84
Identity = 163/177 (92.09%), Postives = 169/177 (95.48%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAEECDEFTDVYFVKFHLV+NARFAKRKLDEFVFLGNRLQVSYAP+FESLLDTKEK
Sbjct: 50  CKPMDAEECDEFTDVYFVKFHLVSNARFAKRKLDEFVFLGNRLQVSYAPDFESLLDTKEK 109

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LEVRRREVLARLDSGRPRGSAV+S T K TNPS SHYTLEQKNSLEKRNYGD AL SNPH
Sbjct: 110 LEVRRREVLARLDSGRPRGSAVNSATTKFTNPSHSHYTLEQKNSLEKRNYGDAALSSNPH 169

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQS SEHL+AGP SK+SR+DNRRRI
Sbjct: 170 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSCSEHLEAGPVSKRSRVDNRRRI 226

[Close]
BLAST of HG10005134 vs. ExPASy TrEMBL
Match: A0A1S3BAX9 (RNA-binding protein 48 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.7e-84
Identity = 166/174 (95.40%), Postives = 171/174 (98.28%), Query Frame = 0 

Query: 61  MDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEV 120
           MDAEECDEFTDVYFVKFH VTNARFAKRKLDEFVFLGNRLQVSYAPEFESL+DTKEKLEV
Sbjct: 1   MDAEECDEFTDVYFVKFHSVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLVDTKEKLEV 60

Query: 121 RRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPHVSQ 180
           RRREVLARLDSGRPRGSAVSSTTAKLTNPSRS+YTLEQKNSLE RNYGD ALIS+PHVSQ
Sbjct: 61  RRREVLARLDSGRPRGSAVSSTTAKLTNPSRSNYTLEQKNSLENRNYGDAALISSPHVSQ 120

Query: 181 ITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRMDNRRRI 235
           +TRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSR+DNRRRI
Sbjct: 121 MTRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPASKKSRLDNRRRI 174

[Close]
BLAST of HG10005134 vs. TAIR 10
Match: AT2G27790.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 165.6 bits (418), Expect = 4.7e-41
Identity = 99/202 (49.01%), Postives = 128/202 (63.37%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAE+C EFTDVY++KF L+TNARFAKRKLDE  FLGNRLQ+SYAPE+E++ DTK+K
Sbjct: 50  CKPMDAEDCAEFTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDK 109

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRSHYTLEQKNSLEKRNYGDTALISN 177
           LE RR+EVLARL+   P+    +S   KL  P  +++     Q+  +E + +   A    
Sbjct: 110 LESRRKEVLARLN---PQKEKSTSQVTKLAGPALTQTDNVSSQRREMEYQFHRGNA---- 169

Query: 178 PHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPAS------------ 235
                +TRVSSDQ+YFAS SMNQTV  VREKL+KI+ S    +  P+S            
Sbjct: 170 ----PVTRVSSDQEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKR 229

[Close]
BLAST of HG10005134 vs. TAIR 10
Match: AT2G27790.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 165.6 bits (418), Expect = 4.7e-41
Identity = 99/202 (49.01%), Postives = 128/202 (63.37%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAE+C EFTDVY++KF L+TNARFAKRKLDE  FLGNRLQ+SYAPE+E++ DTK+K
Sbjct: 50  CKPMDAEDCAEFTDVYWIKFRLITNARFAKRKLDESSFLGNRLQISYAPEYENVNDTKDK 109

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNP--SRSHYTLEQKNSLEKRNYGDTALISN 177
           LE RR+EVLARL+   P+    +S   KL  P  +++     Q+  +E + +   A    
Sbjct: 110 LESRRKEVLARLN---PQKEKSTSQVTKLAGPALTQTDNVSSQRREMEYQFHRGNA---- 169

Query: 178 PHVSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPAS------------ 235
                +TRVSSDQ+YFAS SMNQTV  VREKL+KI+ S    +  P+S            
Sbjct: 170 ----PVTRVSSDQEYFASSSMNQTVKTVREKLNKIEESGNQKRLQPSSQTQPEESGNQKR 229

[Close]
BLAST of HG10005134 vs. TAIR 10
Match: AT5G27300.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-37
Identity = 95/183 (51.91%), Postives = 121/183 (66.12%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAE+C EFTDVY++KF L+TNA    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEK
Sbjct: 406 CKPMDAEDCAEFTDVYWIKFRLITNA----RKLDESSFLGNRLQISYAPEYESVSDTKEK 465

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LE RR+EVLARL+   P  +  +S   KL  P+ +    +  N   +R   D     +  
Sbjct: 466 LETRRKEVLARLN---PHKAKSTSQVTKLAGPALT----QTDNFSPRRREMDYQF--HRG 525

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPAS------KKSRMDNR 235
            + +TRVSS Q+YFAS SMNQ V  VREKL+KI+ S    +  P+S      K++R+DNR
Sbjct: 526 NAPVTRVSSYQEYFASSSMNQMVKTVREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNR 575

[Close]
BLAST of HG10005134 vs. TAIR 10
Match: AT5G27300.2 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-37
Identity = 95/183 (51.91%), Postives = 121/183 (66.12%), Query Frame = 0 

Query: 58  CKPMDAEECDEFTDVYFVKFHLVTNARFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEK 117
           CKPMDAE+C EFTDVY++KF L+TNA    RKLDE  FLGNRLQ+SYAPE+ES+ DTKEK
Sbjct: 381 CKPMDAEDCAEFTDVYWIKFRLITNA----RKLDESSFLGNRLQISYAPEYESVSDTKEK 440

Query: 118 LEVRRREVLARLDSGRPRGSAVSSTTAKLTNPSRSHYTLEQKNSLEKRNYGDTALISNPH 177
           LE RR+EVLARL+   P  +  +S   KL  P+ +    +  N   +R   D     +  
Sbjct: 441 LETRRKEVLARLN---PHKAKSTSQVTKLAGPALT----QTDNFSPRRREMDYQF--HRG 500

Query: 178 VSQITRVSSDQDYFASESMNQTVHLVREKLDKIQSSSEHLQAGPAS------KKSRMDNR 235
            + +TRVSS Q+YFAS SMNQ V  VREKL+KI+ S    +  P+S      K++R+DNR
Sbjct: 501 NAPVTRVSSYQEYFASSSMNQMVKTVREKLNKIEESGNQKRLQPSSQTQPDFKRTRVDNR 550

[Close]
BLAST of HG10005134 vs. TAIR 10
Match: AT3G10860.1 (Cytochrome b-c1 complex, subunit 8 protein )

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-23
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 0 

Query: 1  MGKQPVRMKAVIYALSPFQQKIMTGLWNDFTGKIHHKISENWISAALLITPVVGTY 57
          MGKQPV++KAV+YALSPFQQKIMTGLW D   KIHHK+SENWISA LL+TPVVGTY
Sbjct: 1  MGKQPVKLKAVVYALSPFQQKIMTGLWKDLPEKIHHKVSENWISATLLVTPVVGTY 56

The following BLAST results are available for this feature:
BLAST of HG10005134 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142975.11.7e-8897.74RNA-binding protein 48 isoform X2 [Cucumis sativus] >KGN62296.1 hypothetical pro... [more]
XP_038884635.16.3e-8897.18RNA-binding protein 48 isoform X1 [Benincasa hispida][more]
XP_011649485.14.1e-8797.19RNA-binding protein 48 isoform X1 [Cucumis sativus][more]
XP_008444339.11.5e-8695.48PREDICTED: RNA-binding protein 48 isoform X1 [Cucumis melo] >KAA0061081.1 RNA-bi... [more]
XP_022997621.14.2e-8492.09RNA-binding protein 48 isoform X1 [Cucurbita maxima][more]
BLAST of HG10005134 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SG916.2e-2282.14Cytochrome b-c1 complex subunit 8-1, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
Q9FLB76.9e-2177.19Cytochrome b-c1 complex subunit 8-2, mitochondrial OS=Arabidopsis thaliana OX=37... [more]
P462699.0e-2175.44Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum OX=4113 PE=1 SV=2[more]
A4FVJ77.6e-1234.11RNA-binding protein 48 OS=Danio rerio OX=7955 GN=rbm48 PE=2 SV=1[more]
Q5R4U24.2e-1046.97RNA-binding protein 48 OS=Pongo abelii OX=9601 GN=RBM48 PE=2 SV=1[more]
BLAST of HG10005134 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQL28.0e-8997.74RNA-binding protein 48 OS=Cucumis sativus OX=3659 GN=Csa_2G348830 PE=3 SV=1[more]
A0A5A7V5K47.5e-8795.48RNA-binding protein 48 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5... [more]
A0A1S3BA347.5e-8795.48RNA-binding protein 48 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=3 SV=1[more]
A0A6J1K7Z42.0e-8492.09RNA-binding protein 48 OS=Cucurbita maxima OX=3661 GN=LOC111492499 PE=3 SV=1[more]
A0A1S3BAX92.7e-8495.40RNA-binding protein 48 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487697 PE=4 S... [more]
BLAST of HG10005134 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G27790.14.7e-4149.01RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G27790.24.7e-4149.01RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G27300.11.4e-3751.91pentatricopeptide (PPR) repeat-containing protein [more]
AT5G27300.21.4e-3751.91pentatricopeptide (PPR) repeat-containing protein [more]
AT3G10860.14.4e-2382.14Cytochrome b-c1 complex, subunit 8 protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020101Cytochrome b-c1 complex subunit 8, plantsPFAMPF10890Cyt_b-c1_8coord: 1..57
e-value: 5.1E-25
score: 87.7
IPR036642Cytochrome b-c1 complex subunit 8 superfamilyGENE3D1.20.5.210coord: 2..67
e-value: 1.8E-5
score: 26.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 211..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..156
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..160
IPR039599RNA-binding protein 48PANTHERPTHR20957UNCHARACTERIZEDcoord: 57..234

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005134.1HG10005134.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0070469 respirasome
molecular_function GO:0003723 RNA binding