HG10005066 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005066
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Remorin_C domain-containing protein
Location	Chr08: 22663931 .. 22664125 (-)
RNA-Seq Expression	HG10005066
Synteny	HG10005066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTGATGCACAAGAGATGCTGGCAGATAAACTAGCAGCCACGAGAAGAATAGCTGAAGAGAAACGTGCAAATGCAGAGGCAAAACTTAATAAAAAATCTGTAAGGACTTCTGAAAAGGCTGATTATATTAGGAGGACTGGTCATTTACCTTCTTTCTCCGTCAAGTTGCCTTCTCTGTGCTGCTGGTAG

mRNA sequence

ATGAAAGCTGATGCACAAGAGATGCTGGCAGATAAACTAGCAGCCACGAGAAGAATAGCTGAAGAGAAACGTGCAAATGCAGAGGCAAAACTTAATAAAAAATCTGTAAGGACTTCTGAAAAGGCTGATTATATTAGGAGGACTGGTCATTTACCTTCTTTCTCCGTCAAGTTGCCTTCTCTGTGCTGCTGGTAG

Coding sequence (CDS)

ATGAAAGCTGATGCACAAGAGATGCTGGCAGATAAACTAGCAGCCACGAGAAGAATAGCTGAAGAGAAACGTGCAAATGCAGAGGCAAAACTTAATAAAAAATCTGTAAGGACTTCTGAAAAGGCTGATTATATTAGGAGGACTGGTCATTTACCTTCTTTCTCCGTCAAGTTGCCTTCTCTGTGCTGCTGGTAG

Protein sequence

MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSFSVKLPSLCCW

Homology

[Close]

BLAST of HG10005066 vs. NCBI nr
Match: XP_038884350.1 (remorin [Benincasa hispida] >XP_038884351.1 remorin [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP-SFSVKLP 60
           MKA AQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP SFS KLP
Sbjct: 278 MKAGAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSSFSFKLP 337

Query: 61  SLCCW 65
           SLCCW
Sbjct: 338 SLCCW 342

[Close]

BLAST of HG10005066 vs. NCBI nr
Match: KAA0061021.1 (Remorin family protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP-SFSVKLP 60
           MKA AQEM+ADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP SFS KLP
Sbjct: 280 MKAGAQEMMADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSSFSFKLP 339

Query: 61  SLCCW 65
           SLCCW
Sbjct: 340 SLCCW 344

[Close]

BLAST of HG10005066 vs. NCBI nr
Match: XP_008444431.1 (PREDICTED: uncharacterized protein At3g61260 [Cucumis melo])

HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP-SFSVKLP 60
           MKA AQEM+ADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP SFS KLP
Sbjct: 280 MKAGAQEMMADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSSFSFKLP 339

Query: 61  SLCCW 65
           SLCCW
Sbjct: 340 SLCCW 344

[Close]

BLAST of HG10005066 vs. NCBI nr
Match: XP_022131308.1 (remorin-like [Momordica charantia] >XP_022131309.1 remorin-like [Momordica charantia])

HSP 1 Score: 113.2 bits (282), Expect = 8.1e-22
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPS-FSVKLP 60
           MKA A+EMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPS FS KLP
Sbjct: 278 MKACAEEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSYFSFKLP 337

Query: 61  SLCCW 65
           SLCCW
Sbjct: 338 SLCCW 342

[Close]

BLAST of HG10005066 vs. NCBI nr
Match: XP_004142942.1 (uncharacterized protein LOC101222169 [Cucumis sativus] >KGN62625.2 hypothetical protein Csa_018715 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPS-FSVKLP 60
           MKA AQE LADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPS FS KLP
Sbjct: 280 MKAGAQETLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSYFSFKLP 339

Query: 61  SLCCW 65
           SLCCW
Sbjct: 340 SLCCW 344

[Close]

BLAST of HG10005066 vs. ExPASy TrEMBL
Match: A0A5A7V5G2 (Remorin family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001560 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP-SFSVKLP 60
           MKA AQEM+ADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP SFS KLP
Sbjct: 280 MKAGAQEMMADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSSFSFKLP 339

Query: 61  SLCCW 65
           SLCCW
Sbjct: 340 SLCCW 344

[Close]

BLAST of HG10005066 vs. ExPASy TrEMBL
Match: A0A1S3BB29 (uncharacterized protein At3g61260 OS=Cucumis melo OX=3656 GN=LOC103487759 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP-SFSVKLP 60
           MKA AQEM+ADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP SFS KLP
Sbjct: 280 MKAGAQEMMADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSSFSFKLP 339

Query: 61  SLCCW 65
           SLCCW
Sbjct: 340 SLCCW 344

[Close]

BLAST of HG10005066 vs. ExPASy TrEMBL
Match: A0A6J1BPV7 (remorin-like OS=Momordica charantia OX=3673 GN=LOC111004571 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.9e-22
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPS-FSVKLP 60
           MKA A+EMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPS FS KLP
Sbjct: 278 MKACAEEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSYFSFKLP 337

Query: 61  SLCCW 65
           SLCCW
Sbjct: 338 SLCCW 342

[Close]

BLAST of HG10005066 vs. ExPASy TrEMBL
Match: A0A0A0LMY4 (Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350470 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.1e-22
Identity = 61/65 (93.85%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPS-FSVKLP 60
           MKA AQE LADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPS FS KLP
Sbjct: 272 MKAGAQETLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSYFSFKLP 331

Query: 61  SLCCW 65
           SLCCW
Sbjct: 332 SLCCW 336

[Close]

BLAST of HG10005066 vs. ExPASy TrEMBL
Match: A0A6J1KIQ7 (uncharacterized protein LOC111496108 OS=Cucurbita maxima OX=3661 GN=LOC111496108 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.4e-21
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSFSVKLPS 60
           MKA A+EMLADK+AATRRIAEEKRANAEAKLNKKSVRTSEKADYI RTGHLPSFS KLPS
Sbjct: 278 MKACAEEMLADKVAATRRIAEEKRANAEAKLNKKSVRTSEKADYIGRTGHLPSFSFKLPS 337

Query: 61  LCC 64
           LCC
Sbjct: 338 LCC 340

[Close]

BLAST of HG10005066 vs. TAIR 10
Match: AT1G67590.1 (Remorin family protein )

HSP 1 Score: 91.3 bits (225), Expect = 3.1e-19
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLP---SFSVK 60
           MKA A+E LA+KLAAT+RIAEE+RANAEAKLN+K+V+TSEKADYIRR+GHLP   SFS K
Sbjct: 280 MKARAEEKLANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIRRSGHLPSSFSFSFK 339

Query: 61  LPSLC 63
           LPS C
Sbjct: 340 LPSRC 344

[Close]

BLAST of HG10005066 vs. TAIR 10
Match: AT2G02170.1 (Remorin family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSFSVKLPS 60
           +K  AQ+ L  KLA   R AEEKRA AEAK + ++ +T ++A+ IRRTG +PS      S
Sbjct: 424 IKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCFS 483

Query: 61  LC 63
            C
Sbjct: 484 FC 485

[Close]

BLAST of HG10005066 vs. TAIR 10
Match: AT2G02170.2 (Remorin family protein )

HSP 1 Score: 49.3 bits (116), Expect = 1.3e-06
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSFSVKLPS 60
           +K  AQ+ L  KLA   R AEEKRA AEAK + ++ +T ++A+ IRRTG +PS      S
Sbjct: 424 IKGRAQDRLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCFS 483

Query: 61  LC 63
            C
Sbjct: 484 FC 485

[Close]

BLAST of HG10005066 vs. TAIR 10
Match: AT1G30320.1 (Remorin family protein )

HSP 1 Score: 44.7 bits (104), Expect = 3.3e-05
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 1   MKADAQEMLADKLAATRRIAEEKRANAEAKLNKKSVRTSEKADYIRRTGHLPSFSVKLPS 60
           MKA+A+  +  K+A  ++ +EEKRA AEA+  + + +   +A YIR TG +P+ S K   
Sbjct: 446 MKAEAEAKIMKKIALAKQRSEEKRALAEARKTRDAEKAVAEAQYIRETGRIPASSYK--- 505

Query: 61  LCC 64
           +CC
Sbjct: 506 ICC 505

The following BLAST results are available for this feature:

BLAST of HG10005066 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884350.1	2.1e-22	95.38	remorin [Benincasa hispida] >XP_038884351.1 remorin [Benincasa hispida]	[more]
KAA0061021.1	3.7e-22	93.85	Remorin family protein [Cucumis melo var. makuwa]	[more]
XP_008444431.1	3.7e-22	93.85	PREDICTED: uncharacterized protein At3g61260 [Cucumis melo]	[more]
XP_022131308.1	8.1e-22	93.85	remorin-like [Momordica charantia] >XP_022131309.1 remorin-like [Momordica chara...	[more]
XP_004142942.1	1.1e-21	93.85	uncharacterized protein LOC101222169 [Cucumis sativus] >KGN62625.2 hypothetical ...	[more]

BLAST of HG10005066 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5G2	1.8e-22	93.85	Remorin family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold5...	[more]
A0A1S3BB29	1.8e-22	93.85	uncharacterized protein At3g61260 OS=Cucumis melo OX=3656 GN=LOC103487759 PE=3 S...	[more]
A0A6J1BPV7	3.9e-22	93.85	remorin-like OS=Momordica charantia OX=3673 GN=LOC111004571 PE=3 SV=1	[more]
A0A0A0LMY4	5.1e-22	93.85	Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350470 P...	[more]
A0A6J1KIQ7	4.4e-21	92.06	uncharacterized protein LOC111496108 OS=Cucurbita maxima OX=3661 GN=LOC111496108...	[more]

BLAST of HG10005066 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67590.1	3.1e-19	76.92	Remorin family protein	[more]
AT2G02170.1	1.3e-06	46.77	Remorin family protein	[more]
AT2G02170.2	1.3e-06	46.77	Remorin family protein	[more]
AT1G30320.1	3.3e-05	39.68	Remorin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 10..37
None	No IPR available	PANTHER	PTHR31471	OS02G0116800 PROTEIN	coord: 1..63
None	No IPR available	PANTHER	PTHR31471:SF52	F12A21.28	coord: 1..63
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 1..53 e-value: 6.3E-12 score: 45.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005066.1	HG10005066.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010033	response to organic substance
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006950	response to stress