HG10004997 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004997
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Small VCP/p97-interacting protein
Location	Chr08: 22048600 .. 22049637 (-)
RNA-Seq Expression	HG10004997
Synteny	HG10004997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCAATGCGTAAGTTGTCTTGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGTTATTTCCTTTTCCCTCAACTTTAACTTTCTTTCTCAGTTTCTCTTCAGCTTCCTCGTCCTTTTTCAATTACAGCACCTTTTCACTTTAATTAGGGCTTTCCTTCATTGTTATGTTTTTTCAGTCAGTCTCGTTATTTTCTTTTTCCTTTTCTTTTTCTATGAACGTGAATTGTTCAGGTTTGGGATGTGACAGTTCCACAGGGGAATGGTTTTGACAAATAATCGTATCATAGCTTGTTTTATTAGGGTTTCGTTTTACTTTCCTGTTTGGAAATACTAGTTTGTTTACAGCTTCCTTATGAAACTATTTATTAAAATCTTGTTAAATTTCCAGAAACTATAAAAAGTACATTTCATAAACATATTAAAGCTGTTGAGATTTTTTTTTAAGAAATATGTAAAAAAGAATTTTAGATACTGCTAGAATCAAGCTTATTTTTTTAAAATAAAAAGTTGTCAAAATAGTTCAGGTTTGGAACCTCATGATTTAACTTCTTTTTTCTAGAAAATTCTTAGTGACCTAAAGAAAAAACAGGAAGCAAGCTAGAAAAAGAAGCTATGAGTGCTCTAATTTGAGATGACTGGATTGCACTTACCAATCTTTACCTGAAAAATGCCCTTTGGTATAAGTTAATTCACACCAAGGATGTAACGTCTATAGTTGGCTGCTCTTGATAATGTATTGAGCTATCTGTTTTAAATTGAAACGGTAATTTCAAATTAGGAACTATGATGGGAATATCCATGTGTTTTATACTGAAAGGGATATAAATATTTGCAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTGAAGGTCATTGAAATACCAGTTGTTTTTCTTGTTTCTTAA

mRNA sequence

ATGGGGCAATGCGTAAGTTGTCTTGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTGAAGGTCATTGAAATACCAGTTGTTTTTCTTGTTTCTTAA

Coding sequence (CDS)

ATGGGGCAATGCGTAAGTTGTCTTGACGAAGGCGAAAAGCAACAGAGAAAAGAGGAAGAAAGATTAGCTTCCGTCGAAGCTCGCGCCAAAGCTGCTGAAGCCGCTCAGAGAAGGCAAGAAGAATTTGAAAAATCTGCTGCAGGAAGGGCTGCACGTGCTCAGTTGGCAGCAAATGCAAAGCAATCTGCTAACACTAACAAGGGAGAACCAGTTCTGAAGGTCATTGAAATACCAGTTGTTTTTCTTGTTTCTTAA

Protein sequence

MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSANTNKGEPVLKVIEIPVVFLVS

Homology

[Close]

BLAST of HG10004997 vs. NCBI nr
Match: XP_038886006.1 (uncharacterized protein LOC120076314 [Benincasa hispida])

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-26
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of HG10004997 vs. NCBI nr
Match: XP_008444542.1 (PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo])

HSP 1 Score: 127.9 bits (320), Expect = 4.2e-26
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEG+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of HG10004997 vs. NCBI nr
Match: KAG7029301.1 (hypothetical protein SDJN02_07639, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of HG10004997 vs. NCBI nr
Match: XP_022962383.1 (uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 uncharacterized protein LOC111492013 [Cucurbita maxima] >XP_023547040.1 uncharacterized protein LOC111805961 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.5 bits (306), Expect = 1.8e-24
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of HG10004997 vs. NCBI nr
Match: KAG7020610.1 (hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 3.9e-24
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 20 MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 79

Query: 61 QSANTNKGEPVLK 74
          QSAN NKGEPVLK
Sbjct: 80 QSANANKGEPVLK 92

[Close]

BLAST of HG10004997 vs. ExPASy TrEMBL
Match: A0A1S3BAJ0 (uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.0e-26
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDEG+KQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCVSCLDEGQKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of HG10004997 vs. ExPASy TrEMBL
Match: A0A6J1K846 (uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-25
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of HG10004997 vs. ExPASy TrEMBL
Match: A0A6J1HEN1 (uncharacterized protein LOC111462843 OS=Cucurbita moschata OX=3662 GN=LOC111462843 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.5e-25
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQC SCLDEG++Q+RKEEERLASVEARAKAAEAAQ+RQEEFEKSAAGRAARAQLAANAK
Sbjct: 1  MGQCASCLDEGQEQERKEEERLASVEARAKAAEAAQKRQEEFEKSAAGRAARAQLAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSANTNKGEPVLK
Sbjct: 61 QSANTNKGEPVLK 73

[Close]

BLAST of HG10004997 vs. ExPASy TrEMBL
Match: A0A6J1KLT2 (uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSAN NKGEPVLK
Sbjct: 61 QSANANKGEPVLK 73

[Close]

BLAST of HG10004997 vs. ExPASy TrEMBL
Match: A0A6J1GGM5 (uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC111454028 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = 0


Query: 1  MGQCVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAK 60
          MGQCVSCLDE +KQQRKEEERLASVEAR+KAAEAAQRRQEEFEKSAAGRAARAQ+AANAK
Sbjct: 1  MGQCVSCLDEDQKQQRKEEERLASVEARSKAAEAAQRRQEEFEKSAAGRAARAQMAANAK 60

Query: 61 QSANTNKGEPVLK 74
          QSAN NKGEPVLK
Sbjct: 61 QSANANKGEPVLK 73

[Close]

BLAST of HG10004997 vs. TAIR 10
Match: AT5G63905.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 95.1 bits (235), Expect = 2.8e-20
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 4  CVSCLDEGEKQQRKEEERLASVEARAKAAEAAQRRQEEFEKSAAGRAARAQLAANAKQSA 63
          C SC D  +K+QRKEEER AS EARAKAAEAAQRR+E+F+KSAAGRAA+AQL   AKQSA
Sbjct: 3  CFSCFDGTQKEQRKEEERQASAEARAKAAEAAQRRKEQFDKSAAGRAAQAQLQQMAKQSA 62

Query: 64 NTNKGEPVLK 74
          NTNKGEPVLK
Sbjct: 63 NTNKGEPVLK 72

The following BLAST results are available for this feature:

BLAST of HG10004997 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886006.1	1.9e-26	100.00	uncharacterized protein LOC120076314 [Benincasa hispida]	[more]
XP_008444542.1	4.2e-26	98.63	PREDICTED: uncharacterized protein LOC103487833 [Cucumis melo]	[more]
KAG7029301.1	1.8e-24	93.15	hypothetical protein SDJN02_07639, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022962383.1	1.8e-24	93.15	uncharacterized protein LOC111462843 [Cucurbita moschata] >XP_022996925.1 unchar...	[more]
KAG7020610.1	3.9e-24	93.15	hypothetical protein SDJN02_17296 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10004997 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAJ0	2.0e-26	98.63	uncharacterized protein LOC103487833 OS=Cucumis melo OX=3656 GN=LOC103487833 PE=...	[more]
A0A6J1K846	8.5e-25	93.15	uncharacterized protein LOC111492013 OS=Cucurbita maxima OX=3661 GN=LOC111492013...	[more]
A0A6J1HEN1	8.5e-25	93.15	uncharacterized protein LOC111462843 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1KLT2	1.9e-24	93.15	uncharacterized protein LOC111496424 OS=Cucurbita maxima OX=3661 GN=LOC111496424...	[more]
A0A6J1GGM5	1.9e-24	93.15	uncharacterized protein LOC111454028 OS=Cucurbita moschata OX=3662 GN=LOC1114540...	[more]

BLAST of HG10004997 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63905.1	2.8e-20	78.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR36813	TRANSMEMBRANE PROTEIN	coord: 1..74
None	No IPR available	PANTHER	PTHR36813:SF1	TRANSMEMBRANE PROTEIN	coord: 1..74
IPR031632	Small VCP/p97-interacting protein	PFAM	PF15811	SVIP	coord: 1..73 e-value: 3.2E-12 score: 46.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004997.1	HG10004997.1	mRNA