HG10004989 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004989
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	transcription factor bHLH54-like
Location	Chr08: 21980720 .. 21982794 (+)
RNA-Seq Expression	HG10004989
Synteny	HG10004989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCGATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAATTATTCCAGTGAGCTTCAATTACCCAACAATGGCGGCAGCAGCTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTGCAGAGTAACTGTAAACAGGACATAAGGAGCTGTAGTAGCTGCAGTACTACTCATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTTTTTTATGGCAATTGACGAGAGGAATTTTGGGTCTTCATTTTTTTCCGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCACCGCCGAAGGGTTAGATTCCGGCACTGAGAGATTCATTGAGAATAATGTACTACAGGGTAGCCACCCGCCGCCGTTGCCGCTTGTAGATTTCACCAGTGCCGGAAACAAACCAATTGCTTTGAAAAGGAAAGTCAATGGCGGAGACATTTCTGATAATCAGAAGAAGAAAACTCGGATCTCCTCACATGTAAGCCCTTCTATCTAAGGCCGTTTGATAACAATTTTATATAGTTGATTAATTTGGAATGGGAGTAGTAGATCACCCATCAATCTAAACTAAAAGAAATTAAAATCAATTGGAGAGGTAATGGAGAGGAATTACTTATCCGCTCTGAAAAGTTTAAATTGATAGATTATGATAAATATAATTATAGAGATAATTTAAGGAATTTTAATAATGGAAAATTCAGGGGCAGAAGAAGAAGAAAACAGAGCAGAAGAGAAGAGGGGAAAATGTAGAGGAAGAAGGGAATGCAAGTGGAGCATCAGAAGGACAGAGCTCCATTAGTTACAGTTCTGATCAGGAAGAGAATGGTTCCGAGGAGGGCAACCGCGGCGGCTCAGGCGCCACCTCCGACGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGGTCGGCAACCGATCCCCAAAGCCTCTACGCCAGAGTAAGCATCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTTCGTATGTATATAAATTTATTTTTCTCTTTCAAATGAGTGAGAGATTATGATTGGTTTTGATTGCAGAAACGAAGGGAAAGAATCAATGAACGATTGAGAATCTTACAGAAGCTTGTTCCGAATGGAACCAAGGTCAGAATCATAACTCCCAATCTTATTTTATTTTTCATCATTAAATGGGAAAATTAAACAAAATATTAATTTTTAAGAATTTGATGGAAGCAGGTTGATATCAGTACCATGCTTGAGGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGGTAACACAAACAAATCAAATAACTTCGTTTGGTAATGATTTTATAAGTAGTTCTTCTATTTATGAAATTTATGCCATTATTCTCACTTATTTTAAAGAAAAATTTAAATAACTAAACAAAGAAACTTATTATATGTAGACTAGTATTTATAAACTTCATTTTCAAAAATTAAAAATTAAAAATGGAGCCTTTATTTACAGATTTTCATGTCTCATCCGCTTACATGAGCACAATATATTTATCAGTTATATTGTTTAGCCAAGTAGCATTGCATGTGTATTTAAAAAAAAAAAATAATAATAAAATAAAATTGGCGTGTGAAATATTCATATGAATGATATTTTTCATAATATTTTGCCTATTTTTTAAATTTTACCAACAAAATATAAGACTATTCTTTTAGGATTAAAAATTGAATGTATTTAAATGTAGATTCAAAATAAAAGAACGGTTATGACATTATCAAGTCTATTTTACATAAATAAAAGGAATATCATCAAACCGACCGTCAATTTATTTATTTATTTTCTATTTCTCCTTTGACTTCCAACAATTAATTAATTTCAACATTTAAAATAATTTTTTTTAAAGAATCAAATTTACTAAAATGCCATTGTCTAATTTTATGCAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACCTTGGCCTTCAACAGAACCTCTCTCCATTTCTTTCACATTGA

mRNA sequence

ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCGATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAATTATTCCAGTGAGCTTCAATTACCCAACAATGGCGGCAGCAGCTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTGCAGAGTAACTGTAAACAGGACATAAGGAGCTGTAGTAGCTGCAGTACTACTCATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTTTTTTATGGCAATTGACGAGAGGAATTTTGGGTCTTCATTTTTTTCCGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCACCGCCGAAGGGTTAGATTCCGGCACTGAGAGATTCATTGAGAATAATGTACTACAGGGTAGCCACCCGCCGCCGTTGCCGCTTGTAGATTTCACCAGTGCCGGAAACAAACCAATTGCTTTGAAAAGGAAAGTCAATGGCGGAGACATTTCTGATAATCAGAAGAAGAAAACTCGGATCTCCTCACATAAACGAAGGGAAAGAATCAATGAACGATTGAGAATCTTACAGAAGCTTGTTCCGAATGGAACCAAGGTTGATATCAGTACCATGCTTGAGGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACCTTGGCCTTCAACAGAACCTCTCTCCATTTCTTTCACATTGA

Coding sequence (CDS)

ATGGAGGCTTTGGGAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCGATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAATTATTCCAGTGAGCTTCAATTACCCAACAATGGCGGCAGCAGCTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTGCAGAGTAACTGTAAACAGGACATAAGGAGCTGTAGTAGCTGCAGTACTACTCATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTTTTTTATGGCAATTGACGAGAGGAATTTTGGGTCTTCATTTTTTTCCGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCACCGCCGAAGGGTTAGATTCCGGCACTGAGAGATTCATTGAGAATAATGTACTACAGGGTAGCCACCCGCCGCCGTTGCCGCTTGTAGATTTCACCAGTGCCGGAAACAAACCAATTGCTTTGAAAAGGAAAGTCAATGGCGGAGACATTTCTGATAATCAGAAGAAGAAAACTCGGATCTCCTCACATAAACGAAGGGAAAGAATCAATGAACGATTGAGAATCTTACAGAAGCTTGTTCCGAATGGAACCAAGGTTGATATCAGTACCATGCTTGAGGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATGGACCTTGGCCTTCAACAGAACCTCTCTCCATTTCTTTCACATTGA

Protein sequence

MEALGGFSDGEWESFAAMFSSEEVNQSHIPMANYSSELQLPNNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNALAATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNKPIALKRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNLSPFLSH

Homology

[Close]

BLAST of HG10004989 vs. NCBI nr
Match: XP_038885774.1 (putative transcription factor bHLH086 [Benincasa hispida])

HSP 1 Score: 406.4 bits (1043), Expect = 1.9e-109
Identity = 229/340 (67.35%), Postives = 241/340 (70.88%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMANY-SSELQLPNNGGSSWFYSLDAFVPNL 60
           MEALGGF DGEWESFAA+FSSEE+NQ+HIP+AN+ SSEL  PNNG +SWFYSLDAFVPNL
Sbjct: 1   MEALGGFFDGEWESFAALFSSEEINQTHIPVANHCSSELPSPNNGVNSWFYSLDAFVPNL 60

Query: 61  QSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNALA- 120
           QSNCKQDIRSCSSCSTT +S+ASV IPNSSDFFM IDERNFGS FFSDVLIEE+DNALA 
Sbjct: 61  QSNCKQDIRSCSSCSTTDHSNASVSIPNSSDFFMPIDERNFGSLFFSDVLIEEIDNALAT 120

Query: 121 --ATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNKPIALKRKVNGGDISDNQKKK 180
             A A+G DS  ERFIE+NVLQGSHPPP  LVD T AGNKPIALKRKVN GDISD+QKKK
Sbjct: 121 ATAAADGEDSSAERFIEHNVLQGSHPPPSQLVDSTGAGNKPIALKRKVNNGDISDDQKKK 180

Query: 181 TRISSH------------------------------------------------------ 240
           TRISSH                                                      
Sbjct: 181 TRISSHGQRKKKTEKRIGASVEEEGNTGGASEGQSSISYSSDQEENDSEEGNGGGSAATS 240

Query: 241 ------------------------KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYV 259
                                   KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYV
Sbjct: 241 DSGLNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYV 300

[Close]

BLAST of HG10004989 vs. NCBI nr
Match: XP_008444563.1 (PREDICTED: putative transcription factor bHLH086 [Cucumis melo])

HSP 1 Score: 386.3 bits (991), Expect = 2.0e-103
Identity = 224/333 (67.27%), Postives = 230/333 (69.07%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAN-YSSEL-QLPNNGG--SSWFYSLDAFV 60
           MEALG FSDGEWESFAAMFSSEE+NQ+HIPM N  SSEL QLPNNGG  SSWFYSLDAFV
Sbjct: 1   MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSSELHQLPNNGGSSSSWFYSLDAFV 60

Query: 61  PNLQSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNA 120
           PNLQS CKQDIRSC        SSASVLIPNSSDFFM IDERNFGS FFSDVLIEEVDNA
Sbjct: 61  PNLQSYCKQDIRSC--------SSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVDNA 120

Query: 121 LAATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNKPIALKRKVNGGDISDNQKKK 180
           LA  AEG DSG  R IENNV Q +HPPP PL+D   AGNKPIALKRKVN GDISDNQKKK
Sbjct: 121 LAVDAEGDDSGMGRLIENNVSQSNHPPPSPLLDSAGAGNKPIALKRKVNNGDISDNQKKK 180

Query: 181 TRISSH------------------------------------------------------ 240
           TRI+SH                                                      
Sbjct: 181 TRITSHGQRKKKTEDKRRGESAEEEGQSSISYNSDQEENGSEEANGGGSGATSDGGINRK 240

Query: 241 -----------------KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI 259
                            KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI
Sbjct: 241 SRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI 300

[Close]

BLAST of HG10004989 vs. NCBI nr
Match: KAA0060948.1 (putative transcription factor bHLH086 [Cucumis melo var. makuwa])

HSP 1 Score: 384.0 bits (985), Expect = 1.0e-102
Identity = 223/333 (66.97%), Postives = 229/333 (68.77%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAN-YSSEL-QLPNNGG--SSWFYSLDAFV 60
           MEALG FSDGEWESFAAMFSSEE+NQ+HIPM N  SSEL QLPNNGG  SSWFYSLDAFV
Sbjct: 1   MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSSELHQLPNNGGSSSSWFYSLDAFV 60

Query: 61  PNLQSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNA 120
           PNLQS CKQDIRSC        SSASVLIPNSSDFFM IDERNFGS FFSDVLIEEVDNA
Sbjct: 61  PNLQSYCKQDIRSC--------SSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVDNA 120

Query: 121 LAATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNKPIALKRKVNGGDISDNQKKK 180
           LA  AEG DSG  R IENN  Q +HPPP PL+D   AGNKPIALKRKVN GDISDNQKKK
Sbjct: 121 LAVDAEGDDSGMGRLIENNESQSNHPPPSPLLDSAGAGNKPIALKRKVNNGDISDNQKKK 180

Query: 181 TRISSH------------------------------------------------------ 240
           TRI+SH                                                      
Sbjct: 181 TRITSHGQRKKKTEDKRRGESAEEEGQSSISYNSDQEENGSEEANGGGSGATSDGGINRK 240

Query: 241 -----------------KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI 259
                            KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI
Sbjct: 241 SRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI 300

[Close]

BLAST of HG10004989 vs. NCBI nr
Match: XP_004143026.1 (transcription factor bHLH85 [Cucumis sativus] >KGN62453.1 hypothetical protein Csa_018600 [Cucumis sativus])

HSP 1 Score: 374.4 bits (960), Expect = 7.9e-100
Identity = 220/337 (65.28%), Postives = 230/337 (68.25%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAN-YSSEL-QLPNNGG----SSWFYSLDA 60
           MEALG FSDGEWESFAAMFSSEE+NQ+HIPM N  S+EL QLPNNGG    SSWFYSLDA
Sbjct: 1   MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSTELHQLPNNGGGGGSSSWFYSLDA 60

Query: 61  FVPNLQSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVD 120
           FVPNLQS CKQDIR+C        SSASVLIPNSSDFFM IDERNFGS FFSDVLIEEV+
Sbjct: 61  FVPNLQSYCKQDIRTC--------SSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVN 120

Query: 121 NALAATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNK-PIALKRKVNGGDISDNQ 180
           NALA  AEG DSG  RFIENNV Q +HPPP PL+D   AGNK PIALKRKVN GDISDNQ
Sbjct: 121 NALAVDAEGEDSGMARFIENNVQQSNHPPPSPLLDSACAGNKLPIALKRKVNNGDISDNQ 180

Query: 181 KKKTRISSH--------------------------------------------------- 240
           KKKTR +S+                                                   
Sbjct: 181 KKKTRTTSNVQRKKKTEDQKKRGENVEEEGQSSISYNSDQEENSSEEANGGGSGATSDGG 240

Query: 241 ---------------------KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFL 259
                                KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFL
Sbjct: 241 VNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFL 300

[Close]

BLAST of HG10004989 vs. NCBI nr
Match: XP_023545480.1 (transcription factor bHLH54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.1 bits (915), Expect = 1.3e-94
Identity = 208/345 (60.29%), Postives = 226/345 (65.51%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMANY---SSELQLPNNGGSSWFYSLDAFVP 60
           MEALGGFSDGEWESFAAMFS EEV+QSHIP+AN+   S+ELQLPNNGGSSWFYSLDAFVP
Sbjct: 1   MEALGGFSDGEWESFAAMFSLEEVDQSHIPIANHADPSTELQLPNNGGSSWFYSLDAFVP 60

Query: 61  NLQSNC-KQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNA 120
           NLQS C KQD RSCSSC TT +S A+ L PNS+DFF  IDERNFGSS FSDVLIEEVD A
Sbjct: 61  NLQSYCVKQDTRSCSSCITTDDSHAAFLFPNSTDFFTPIDERNFGSSCFSDVLIEEVDKA 120

Query: 121 LAATAEGLDSGTERFIENNVLQGSH---PPPLPLVDFTSAGNKPIALKRKVNGGDISDNQ 180
           L   A G DS  ERF+E NV+QG++   PPP  LVD T A  +P+ALKRKVN  DISDNQ
Sbjct: 121 LDTAATGEDSSAERFVEINVVQGTYPALPPPSQLVDSTGAAKEPMALKRKVNNEDISDNQ 180

Query: 181 KKKTRIS----------------------------------------------------- 240
           KKKTR+S                                                     
Sbjct: 181 KKKTRVSADGQKKKKTEERKKNEKRKGKSVEEEGNAGGASEGQCSISYSSDQEENGSQEG 240

Query: 241 ---------------------------SHKRRERINERLRILQKLVPNGTKVDISTMLEE 259
                                      + KRRERINERLR+LQKLVPNGTKVDISTMLEE
Sbjct: 241 QGATSDGGLTRKGRASRGSATDPQSLYARKRRERINERLRMLQKLVPNGTKVDISTMLEE 300

[Close]

BLAST of HG10004989 vs. ExPASy Swiss-Prot
Match: Q3E7L7 (Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.2e-27
Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 145 LPLVDFTSAGNKPIALKRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTK 204
           L LV  TS   K +  K K N G  SD Q     + + KRRERIN+RL+ LQ LVPNGTK
Sbjct: 118 LGLVSNTS---KSLKRKAKANRGIASDPQS----LYARKRRERINDRLKTLQSLVPNGTK 177

Query: 205 VDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNL 253
           VDISTMLE+AVHYVKFLQLQIKLLSS+++WM+APLA+NG+++GL  NL
Sbjct: 178 VDISTMLEDAVHYVKFLQLQIKLLSSEDLWMYAPLAHNGLNMGLHHNL 218

[Close]

BLAST of HG10004989 vs. ExPASy Swiss-Prot
Match: Q84WK0 (Transcription factor RSL2 OS=Arabidopsis thaliana OX=3702 GN=RSL2 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.3e-27
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 161 KRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKF 220
           K + + G  +D Q     + + KRRERINERLRILQ LVPNGTKVDISTMLEEAVHYVKF
Sbjct: 265 KTRASRGAATDPQS----LYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKF 324

Query: 221 LQLQIKLLSSDEMWMFAPLAYNGMDLGL 249
           LQLQIKLLSSD++WM+AP+A+NGMD+GL
Sbjct: 325 LQLQIKLLSSDDLWMYAPIAFNGMDIGL 348

[Close]

BLAST of HG10004989 vs. ExPASy Swiss-Prot
Match: Q7XHI9 (Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-26
Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 161 KRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKF 220
           K + + G  +D Q     + + KRRERINERLRILQ LVPNGTKVDISTMLEEAV YVKF
Sbjct: 236 KTRASRGAATDPQS----LYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKF 295

Query: 221 LQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNLS 254
           LQLQIKLLSSD++WM+AP+AYNGMD+GL   L+
Sbjct: 296 LQLQIKLLSSDDLWMYAPIAYNGMDIGLDLKLN 324

[Close]

BLAST of HG10004989 vs. ExPASy Swiss-Prot
Match: Q8LEG1 (Transcription factor RSL3 OS=Arabidopsis thaliana OX=3702 GN=RSL4 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 161 KRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKF 220
           K +   G  +D Q     + + KRRE+INERL+ LQ LVPNGTKVDISTMLEEAVHYVKF
Sbjct: 166 KTRATKGTATDPQS----LYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKF 225

Query: 221 LQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNL 253
           LQLQIKLLSSD++WM+APLAYNG+D+G   NL
Sbjct: 226 LQLQIKLLSSDDLWMYAPLAYNGLDMGFHHNL 253

[Close]

BLAST of HG10004989 vs. ExPASy Swiss-Prot
Match: Q2QQ32 (Transcription factor BHLH133 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH133 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-22
Identity = 83/207 (40.10%), Postives = 106/207 (51.21%), Query Frame = 0


Query: 70  CSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNALAATAEGLDSGTE 129
           CSS     N S  +    S  +  +  +  FGSS FS +           ++EG D+ T 
Sbjct: 3   CSSFEAICNESEMIAHLQSLFWSSSDADPCFGSSSFSLI-----------SSEGYDTMTT 62

Query: 130 RFIEN--NVLQGSHPPPLPLVDFTSAGNKPIALKRKV---NGGDISDNQKKKTRIS---- 189
            F+ +  NV             F SA    I  KRKV      ++  N+ K+ R      
Sbjct: 63  EFVNSSTNVCFDYQDD-----SFVSAEETTIGNKRKVQMDTENELMTNRSKEVRTKMSVS 122

Query: 190 ----------------SHKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQ 249
                           +  RR+RINERLRILQ+L+PNGTKVDISTMLEEA+ YVKFL LQ
Sbjct: 123 KACKHSVSAESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHLQ 182

Query: 250 IKLLSSDEMWMFAPLAYNGMDLGLQQN 252
           IKLLSSDEMWM+APLA++  +  L QN
Sbjct: 183 IKLLSSDEMWMYAPLAFDSGNNRLYQN 193

[Close]

BLAST of HG10004989 vs. ExPASy TrEMBL
Match: A0A1S3BAK3 (putative transcription factor bHLH086 OS=Cucumis melo OX=3656 GN=LOC103487843 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 9.7e-104
Identity = 224/333 (67.27%), Postives = 230/333 (69.07%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAN-YSSEL-QLPNNGG--SSWFYSLDAFV 60
           MEALG FSDGEWESFAAMFSSEE+NQ+HIPM N  SSEL QLPNNGG  SSWFYSLDAFV
Sbjct: 1   MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSSELHQLPNNGGSSSSWFYSLDAFV 60

Query: 61  PNLQSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNA 120
           PNLQS CKQDIRSC        SSASVLIPNSSDFFM IDERNFGS FFSDVLIEEVDNA
Sbjct: 61  PNLQSYCKQDIRSC--------SSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVDNA 120

Query: 121 LAATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNKPIALKRKVNGGDISDNQKKK 180
           LA  AEG DSG  R IENNV Q +HPPP PL+D   AGNKPIALKRKVN GDISDNQKKK
Sbjct: 121 LAVDAEGDDSGMGRLIENNVSQSNHPPPSPLLDSAGAGNKPIALKRKVNNGDISDNQKKK 180

Query: 181 TRISSH------------------------------------------------------ 240
           TRI+SH                                                      
Sbjct: 181 TRITSHGQRKKKTEDKRRGESAEEEGQSSISYNSDQEENGSEEANGGGSGATSDGGINRK 240

Query: 241 -----------------KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI 259
                            KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI
Sbjct: 241 SRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI 300

[Close]

BLAST of HG10004989 vs. ExPASy TrEMBL
Match: A0A5A7V074 (Putative transcription factor bHLH086 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00810 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.8e-103
Identity = 223/333 (66.97%), Postives = 229/333 (68.77%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAN-YSSEL-QLPNNGG--SSWFYSLDAFV 60
           MEALG FSDGEWESFAAMFSSEE+NQ+HIPM N  SSEL QLPNNGG  SSWFYSLDAFV
Sbjct: 1   MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSSELHQLPNNGGSSSSWFYSLDAFV 60

Query: 61  PNLQSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNA 120
           PNLQS CKQDIRSC        SSASVLIPNSSDFFM IDERNFGS FFSDVLIEEVDNA
Sbjct: 61  PNLQSYCKQDIRSC--------SSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVDNA 120

Query: 121 LAATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNKPIALKRKVNGGDISDNQKKK 180
           LA  AEG DSG  R IENN  Q +HPPP PL+D   AGNKPIALKRKVN GDISDNQKKK
Sbjct: 121 LAVDAEGDDSGMGRLIENNESQSNHPPPSPLLDSAGAGNKPIALKRKVNNGDISDNQKKK 180

Query: 181 TRISSH------------------------------------------------------ 240
           TRI+SH                                                      
Sbjct: 181 TRITSHGQRKKKTEDKRRGESAEEEGQSSISYNSDQEENGSEEANGGGSGATSDGGINRK 240

Query: 241 -----------------KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI 259
                            KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI
Sbjct: 241 SRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQI 300

[Close]

BLAST of HG10004989 vs. ExPASy TrEMBL
Match: A0A0A0LL14 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G354790 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.8e-100
Identity = 220/337 (65.28%), Postives = 230/337 (68.25%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMAN-YSSEL-QLPNNGG----SSWFYSLDA 60
           MEALG FSDGEWESFAAMFSSEE+NQ+HIPM N  S+EL QLPNNGG    SSWFYSLDA
Sbjct: 1   MEALGVFSDGEWESFAAMFSSEEINQTHIPMTNCCSTELHQLPNNGGGGGSSSWFYSLDA 60

Query: 61  FVPNLQSNCKQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVD 120
           FVPNLQS CKQDIR+C        SSASVLIPNSSDFFM IDERNFGS FFSDVLIEEV+
Sbjct: 61  FVPNLQSYCKQDIRTC--------SSASVLIPNSSDFFMPIDERNFGSEFFSDVLIEEVN 120

Query: 121 NALAATAEGLDSGTERFIENNVLQGSHPPPLPLVDFTSAGNK-PIALKRKVNGGDISDNQ 180
           NALA  AEG DSG  RFIENNV Q +HPPP PL+D   AGNK PIALKRKVN GDISDNQ
Sbjct: 121 NALAVDAEGEDSGMARFIENNVQQSNHPPPSPLLDSACAGNKLPIALKRKVNNGDISDNQ 180

Query: 181 KKKTRISSH--------------------------------------------------- 240
           KKKTR +S+                                                   
Sbjct: 181 KKKTRTTSNVQRKKKTEDQKKRGENVEEEGQSSISYNSDQEENSSEEANGGGSGATSDGG 240

Query: 241 ---------------------KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFL 259
                                KRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFL
Sbjct: 241 VNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFL 300

[Close]

BLAST of HG10004989 vs. ExPASy TrEMBL
Match: A0A6J1K9Y5 (transcription factor bHLH54-like OS=Cucurbita maxima OX=3661 GN=LOC111491997 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 2.4e-94
Identity = 207/345 (60.00%), Postives = 226/345 (65.51%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMANY---SSELQLPNNGGSSWFYSLDAFVP 60
           MEALGGFSDGEWE FAAMFSSEEV+QSHIP+AN+   S+ELQLPNNGGSSWFYSLDAFVP
Sbjct: 1   MEALGGFSDGEWEPFAAMFSSEEVDQSHIPIANHADPSTELQLPNNGGSSWFYSLDAFVP 60

Query: 61  NLQSNC-KQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNA 120
           NLQS C KQD RSCSSC TT NS A+ L PNS+DFF  IDE NFGSS+FSDVLIEEVD A
Sbjct: 61  NLQSYCVKQDTRSCSSCITTDNSHAAFLFPNSTDFFTPIDEGNFGSSWFSDVLIEEVDKA 120

Query: 121 LAATAEGLDSGTERFIENNVLQGSH---PPPLPLVDFTSAGNKPIALKRKVNGGDISDNQ 180
           L   A G DS TERF+E NV+QG++   PPP  LVD T A  +P+ALKRKVN  DISDNQ
Sbjct: 121 LYTAATGEDSSTERFVEINVVQGNYPALPPPSQLVDSTGAAKEPMALKRKVNNEDISDNQ 180

Query: 181 KKKTRIS----------------------------------------------------- 240
           KKKTR+S                                                     
Sbjct: 181 KKKTRVSADGQKKKKTEERKKNEKRKGKSVEEEGNAGGASEGQCSISYSSDQEENGSQEG 240

Query: 241 ---------------------------SHKRRERINERLRILQKLVPNGTKVDISTMLEE 259
                                      + KRRERINERLR+LQKLVPNGTKVDISTMLEE
Sbjct: 241 QGATSDGGLIRKGRASRGSATDPQSLYARKRRERINERLRMLQKLVPNGTKVDISTMLEE 300

[Close]

BLAST of HG10004989 vs. ExPASy TrEMBL
Match: A0A6J1HEF6 (transcription factor bHLH54-like OS=Cucurbita moschata OX=3662 GN=LOC111462794 PE=4 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 4.1e-94
Identity = 207/342 (60.53%), Postives = 223/342 (65.20%), Query Frame = 0


Query: 1   MEALGGFSDGEWESFAAMFSSEEVNQSHIPMANYSS---ELQLPNNGGSSWFYSLDAFVP 60
           MEALGGFSDGEWESFAAMFSSEEV+QSHIP+AN+SS   ELQLPNNGGSSWFYSLDAFVP
Sbjct: 1   MEALGGFSDGEWESFAAMFSSEEVDQSHIPIANHSSPSTELQLPNNGGSSWFYSLDAFVP 60

Query: 61  NLQSNC-KQDIRSCSSCSTTHNSSASVLIPNSSDFFMAIDERNFGSSFFSDVLIEEVDNA 120
           NLQS C KQD RSCSSC TT NS A+ L PNS+DFF  IDE N GSS FSDVLIEEVD A
Sbjct: 61  NLQSYCVKQDTRSCSSCITTDNSHAAFLFPNSTDFFTPIDEGNLGSSCFSDVLIEEVDKA 120

Query: 121 LAATAEGLDSGTERFIENNVLQGSH---PPPLPLVDFTSAGNKPIALKRKVNGGDISDNQ 180
           L   A G DS TERF+E NV+QG++   PPP  LVD T A  +P+ALKRKVN  DISDNQ
Sbjct: 121 LDTAAAGEDSSTERFVEINVVQGNYPALPPPSQLVDSTGAAKEPMALKRKVNNEDISDNQ 180

Query: 181 KKKTRIS----------------------------------------------------- 240
            KKTR+S                                                     
Sbjct: 181 NKKTRVSADGQKKKKTEERKKNEKRKGKSVEEEGNAGGASEGQCSISYSSDQEENGSQEG 240

Query: 241 ---------------------------SHKRRERINERLRILQKLVPNGTKVDISTMLEE 256
                                      + KRRERINERLR+LQKLVPNGTKVDISTMLEE
Sbjct: 241 QGATSDGGLTRKGRASRGSATDPQSLYARKRRERINERLRMLQKLVPNGTKVDISTMLEE 300

[Close]

BLAST of HG10004989 vs. TAIR 10
Match: AT5G43175.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-28
Identity = 68/108 (62.96%), Postives = 82/108 (75.93%), Query Frame = 0


Query: 145 LPLVDFTSAGNKPIALKRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTK 204
           L LV  TS   K +  K K N G  SD Q     + + KRRERIN+RL+ LQ LVPNGTK
Sbjct: 118 LGLVSNTS---KSLKRKAKANRGIASDPQS----LYARKRRERINDRLKTLQSLVPNGTK 177

Query: 205 VDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNL 253
           VDISTMLE+AVHYVKFLQLQIKLLSS+++WM+APLA+NG+++GL  NL
Sbjct: 178 VDISTMLEDAVHYVKFLQLQIKLLSSEDLWMYAPLAHNGLNMGLHHNL 218

[Close]

BLAST of HG10004989 vs. TAIR 10
Match: AT4G33880.1 (ROOT HAIR DEFECTIVE 6-LIKE 2 )

HSP 1 Score: 122.1 bits (305), Expect = 6.6e-28
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 161 KRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKF 220
           K + + G  +D Q     + + KRRERINERLRILQ LVPNGTKVDISTMLEEAVHYVKF
Sbjct: 265 KTRASRGAATDPQS----LYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKF 324

Query: 221 LQLQIKLLSSDEMWMFAPLAYNGMDLGL 249
           LQLQIKLLSSD++WM+AP+A+NGMD+GL
Sbjct: 325 LQLQIKLLSSDDLWMYAPIAFNGMDIGL 348

[Close]

BLAST of HG10004989 vs. TAIR 10
Match: AT2G14760.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 8.6e-28
Identity = 64/93 (68.82%), Postives = 75/93 (80.65%), Query Frame = 0


Query: 161 KRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKF 220
           K + + G  +D Q     + + KRRERINERLRILQ LVPNGTKVDISTMLEEAV YVKF
Sbjct: 236 KTRASRGAATDPQS----LYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKF 295

Query: 221 LQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNLS 254
           LQLQIKLLSSD++WM+AP+AYNGMD+GL   L+
Sbjct: 296 LQLQIKLLSSDDLWMYAPIAYNGMDIGLDLKLN 324

[Close]

BLAST of HG10004989 vs. TAIR 10
Match: AT1G27740.1 (root hair defective 6-like 4 )

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-27
Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 161 KRKVNGGDISDNQKKKTRISSHKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKF 220
           K +   G  +D Q     + + KRRE+INERL+ LQ LVPNGTKVDISTMLEEAVHYVKF
Sbjct: 166 KTRATKGTATDPQS----LYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKF 225

Query: 221 LQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNL 253
           LQLQIKLLSSD++WM+APLAYNG+D+G   NL
Sbjct: 226 LQLQIKLLSSDDLWMYAPLAYNGLDMGFHHNL 253

[Close]

BLAST of HG10004989 vs. TAIR 10
Match: AT2G14760.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 119.4 bits (298), Expect = 4.3e-27
Identity = 65/102 (63.73%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 161 KRKVNGGDISDNQKKKTRISS---------HKRRERINERLRILQKLVPNGTKVDISTML 220
           K + + G  +D Q    R+            KRRERINERLRILQ LVPNGTKVDISTML
Sbjct: 236 KTRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRILQHLVPNGTKVDISTML 295

Query: 221 EEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGMDLGLQQNLS 254
           EEAV YVKFLQLQIKLLSSD++WM+AP+AYNGMD+GL   L+
Sbjct: 296 EEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLDLKLN 337

The following BLAST results are available for this feature:

BLAST of HG10004989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885774.1	1.9e-109	67.35	putative transcription factor bHLH086 [Benincasa hispida]	[more]
XP_008444563.1	2.0e-103	67.27	PREDICTED: putative transcription factor bHLH086 [Cucumis melo]	[more]
KAA0060948.1	1.0e-102	66.97	putative transcription factor bHLH086 [Cucumis melo var. makuwa]	[more]
XP_004143026.1	7.9e-100	65.28	transcription factor bHLH85 [Cucumis sativus] >KGN62453.1 hypothetical protein C...	[more]
XP_023545480.1	1.3e-94	60.29	transcription factor bHLH54-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10004989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E7L7	4.2e-27	62.96	Transcription factor bHLH139 OS=Arabidopsis thaliana OX=3702 GN=BHLH139 PE=3 SV=...	[more]
Q84WK0	9.3e-27	71.59	Transcription factor RSL2 OS=Arabidopsis thaliana OX=3702 GN=RSL2 PE=2 SV=1	[more]
Q7XHI9	1.2e-26	68.82	Transcription factor bHLH84 OS=Arabidopsis thaliana OX=3702 GN=BHLH84 PE=1 SV=1	[more]
Q8LEG1	1.6e-26	67.39	Transcription factor RSL3 OS=Arabidopsis thaliana OX=3702 GN=RSL4 PE=1 SV=1	[more]
Q2QQ32	5.3e-22	40.10	Transcription factor BHLH133 OS=Oryza sativa subsp. japonica OX=39947 GN=BHLH133...	[more]

BLAST of HG10004989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BAK3	9.7e-104	67.27	putative transcription factor bHLH086 OS=Cucumis melo OX=3656 GN=LOC103487843 PE...	[more]
A0A5A7V074	4.8e-103	66.97	Putative transcription factor bHLH086 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LL14	3.8e-100	65.28	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G354790 PE=4 S...	[more]
A0A6J1K9Y5	2.4e-94	60.00	transcription factor bHLH54-like OS=Cucurbita maxima OX=3661 GN=LOC111491997 PE=...	[more]
A0A6J1HEF6	4.1e-94	60.53	transcription factor bHLH54-like OS=Cucurbita moschata OX=3662 GN=LOC111462794 P...	[more]

BLAST of HG10004989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43175.1	3.0e-28	62.96	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G33880.1	6.6e-28	71.59	ROOT HAIR DEFECTIVE 6-LIKE 2	[more]
AT2G14760.1	8.6e-28	68.82	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G27740.1	1.1e-27	67.39	root hair defective 6-like 4	[more]
AT2G14760.3	4.3e-27	63.73	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 178..227 e-value: 2.3E-8 score: 43.8
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 182..222 e-value: 5.6E-8 score: 32.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 172..221 score: 14.405036
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 170..237 e-value: 7.7E-11 score: 44.0
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 172..234
None	No IPR available	PANTHER	PTHR16223:SF232	TRANSCRIPTION FACTOR BHLH84-LIKE	coord: 182..255
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 5..180
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 182..255
None	No IPR available	PANTHER	PTHR16223:SF232	TRANSCRIPTION FACTOR BHLH84-LIKE	coord: 5..180
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 179..235 e-value: 3.58258E-32 score: 110.945

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004989.1	HG10004989.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity