HG10004942 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004942
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Thioredoxin domain-containing protein
Location	Chr08: 21585145 .. 21586687 (+)
RNA-Seq Expression	HG10004942
Synteny	HG10004942

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAGCTTTAATCAGTTTTGGATTAAACCCAAATGAAGAAGTGGAATCGAGATTCCCCATTTCAATTCCCCGCTGGTTGTCGTCGGAGAGAGGACAGGTTCGATTGTCGATTACAAGAACCGAAGTTCCAAGACACCAATTGTTGTTCAAGAGTAAAATTAGAGTTGGTGCTGGAAATCAGGGGGAGTTATTTGATGAAGATGATGAACTTTGCCCTGTAGACTGTGTGAGGGAATTCAAGACGGACGAAGAGTTCCTTAAAATTCTAGACAGGGCGAAGGAAAACGGTGCTTTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGCTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGCTCTGGTGATCAAGAAGCACCGGTTATCTTCTTGAAGCATAATGTGAGTGTTTATATCAGCCTTGTTTTCTTGGGAAAATGACTTCCATTCCGCCACTGAATGGTTATATTATGATTTGAATGTGATTCTGGTTTCAGGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTAAGGATCAAGGTAAGCTTCTTTTCTCTTCTTGATTGCCATGCTGGGTGGAATTCTAACTTCTTTAATATATTCAGTTATAAATTTAATAATAATAATAACCATATACTTTTGCTGCAGCAACAACATAACAAATATAAAATTAATATAGGTTTAAATATCATCATGAAAGTATTAAAAAAAATAAAATGGTCTAGTTAATTCTATATAAAAGATGGTTGAATGAAGGACCAAAATTGTTAATGGCAGAGACCAAAAAGAAGGAGATTATTTCAAACTTTAGGGGTTAAAGATTGTCGAGTTTAAAAATTCAGGGATCCAAATTGAAAGAAAAAAAATGTAGTTTTTGTTCTCTTATTTAATTCTGTCTAATATGCTAAAAAAAAGTGTATAATAAGGCCCATAAACTGTAAACTATCAATTTTGTGTCAAATCTACACTTGACATATTTGACTTATTTCTTAAGAAATAAGGATGTCAATAGACATAAAATAGACAAAATTAAAAAATGTCCAATGGGTCAATAATAGATTAGACACAAAAATGAAAGTTTTAGAAGAATATTATATAGTTTTTAAAGTTTAAAAATCAATTAGACACAAAATTCAAAGTTTATAGATATATTAAACACATTTTTATAATTTAGGAACCAAATAGACAACCATCAAAATTTAAAAACTTAATTTGCAATATAACTTATTTTTGTTAAATTTCAATTTTGTGTCTAAAATGTTCATGTTTGTGTTAATTAAGTTCCTAAATTGTTCATGTCTGAGTCAATTAAGCTTTGGTTTTGCATTTTTGTTCACTAATATTGAAATTTGATTATTGCATTGCAGACAGTGCCACTGTTCCACTTCTATAAAGATGGGGTCTTATTAGAAGCATTTCCCACCAGAGATAAAGAGAGGATTCTTACAGCCATTAGCAAATATTCATCTTCTGCACTTCAAATTTGA

mRNA sequence

ATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAGCTTTAATCAGTTTTGGATTAAACCCAAATGAAGAAGTGGAATCGAGATTCCCCATTTCAATTCCCCGCTGGTTGTCGTCGGAGAGAGGACAGGTTCGATTGTCGATTACAAGAACCGAAGTTCCAAGACACCAATTGTTGTTCAAGAGTAAAATTAGAGTTGGTGCTGGAAATCAGGGGGAGTTATTTGATGAAGATGATGAACTTTGCCCTGTAGACTGTGTGAGGGAATTCAAGACGGACGAAGAGTTCCTTAAAATTCTAGACAGGGCGAAGGAAAACGGTGCTTTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGCTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGCTCTGGTGATCAAGAAGCACCGGTTATCTTCTTGAAGCATAATGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTAAGGATCAAGACAGTGCCACTGTTCCACTTCTATAAAGATGGGGTCTTATTAGAAGCATTTCCCACCAGAGATAAAGAGAGGATTCTTACAGCCATTAGCAAATATTCATCTTCTGCACTTCAAATTTGA

Coding sequence (CDS)

ATGCAAAGGCAGAACCAGAATGTACTGCAATGTAAAGCTTTAATCAGTTTTGGATTAAACCCAAATGAAGAAGTGGAATCGAGATTCCCCATTTCAATTCCCCGCTGGTTGTCGTCGGAGAGAGGACAGGTTCGATTGTCGATTACAAGAACCGAAGTTCCAAGACACCAATTGTTGTTCAAGAGTAAAATTAGAGTTGGTGCTGGAAATCAGGGGGAGTTATTTGATGAAGATGATGAACTTTGCCCTGTAGACTGTGTGAGGGAATTCAAGACGGACGAAGAGTTCCTTAAAATTCTAGACAGGGCGAAGGAAAACGGTGCTTTGGTGGTTGTGGACTTTTATCGAACATCTTGTGGGAGCTGCAAATATATAGAACAAGGGTTTGCAAAATTGTGCAAGGGCTCTGGTGATCAAGAAGCACCGGTTATCTTCTTGAAGCATAATGTCATGGATGAATATGATGAACAATCTGAGGTTGCTGAACGACTAAGGATCAAGACAGTGCCACTGTTCCACTTCTATAAAGATGGGGTCTTATTAGAAGCATTTCCCACCAGAGATAAAGAGAGGATTCTTACAGCCATTAGCAAATATTCATCTTCTGCACTTCAAATTTGA

Protein sequence

MQRQNQNVLQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLFKSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYSSSALQI

Homology

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BLAST of HG10004942 vs. NCBI nr
Match: XP_038886222.1 (thioredoxin-like 4, chloroplastic [Benincasa hispida] >XP_038886223.1 thioredoxin-like 4, chloroplastic [Benincasa hispida] >XP_038886224.1 thioredoxin-like 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 399.4 bits (1025), Expect = 1.8e-107
Identity = 196/206 (95.15%), Postives = 200/206 (97.09%), Query Frame = 0


Query: 1   MQRQNQNVLQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLF 60
           MQRQN+NVLQCKALISFGLNPNEE+ESR PISIPRWLSSE+G VRLSITR EVPR QLLF
Sbjct: 1   MQRQNRNVLQCKALISFGLNPNEELESRIPISIPRWLSSEKGNVRLSITRPEVPRQQLLF 60

Query: 61  KSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCG 120
           KSKIRV AGNQGELFD+DDELCPVDCVREFKTDEEFLKILDRAKENG LVVVDFYRTSCG
Sbjct: 61  KSKIRVTAGNQGELFDDDDELCPVDCVREFKTDEEFLKILDRAKENGTLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180
           SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180

Query: 181 LEAFPTRDKERILTAISKYSSSALQI 207
           LEAFPTRDKERILTAISKYSSSALQI
Sbjct: 181 LEAFPTRDKERILTAISKYSSSALQI 206

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BLAST of HG10004942 vs. NCBI nr
Match: XP_008444622.1 (PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo])

HSP 1 Score: 379.8 bits (974), Expect = 1.5e-101
Identity = 183/206 (88.83%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MQRQNQNVLQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLF 60
           MQRQNQNVLQCK LISFGL+PNE++ESR PI IPRWLSSE+  VRLSITR EVPRHQLL+
Sbjct: 1   MQRQNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVPRHQLLY 60

Query: 61  KSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCG 120
           KSK+RV AGNQGE+ DEDD+LCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180
           SCKYIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRIK+VPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVL 180

Query: 181 LEAFPTRDKERILTAISKYSSSALQI 207
           LEAFPTRDKERILTAI+KYSSS LQI
Sbjct: 181 LEAFPTRDKERILTAITKYSSSPLQI 206

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BLAST of HG10004942 vs. NCBI nr
Match: XP_004150883.1 (thioredoxin-like 4, chloroplastic [Cucumis sativus] >XP_011649582.1 thioredoxin-like 4, chloroplastic [Cucumis sativus] >XP_031736609.1 thioredoxin-like 4, chloroplastic [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 1.5e-101
Identity = 184/206 (89.32%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MQRQNQNVLQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLF 60
           MQRQNQNVLQCK LISFGLNPNE++E R PI IPRWLSSE+  VRLSITR EVPR+QLL+
Sbjct: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY 60

Query: 61  KSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCG 120
           KSK+RV AGNQGEL DEDD+LCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180
           SCKYIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180

Query: 181 LEAFPTRDKERILTAISKYSSSALQI 207
           LEAFPTRDKERILTAI+KYSSS LQI
Sbjct: 181 LEAFPTRDKERILTAITKYSSSPLQI 206

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BLAST of HG10004942 vs. NCBI nr
Match: KAA0060902.1 (thioredoxin-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-100
Identity = 182/206 (88.35%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MQRQNQNVLQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLF 60
           MQRQNQNVLQCK LISFGL+PNE++ESR PI IPRWLSSE+  VRLSITR EV RHQLL+
Sbjct: 1   MQRQNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVQRHQLLY 60

Query: 61  KSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCG 120
           KSK+RV AGNQGE+ DEDD+LCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180
           SCKYIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRIK+VPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVL 180

Query: 181 LEAFPTRDKERILTAISKYSSSALQI 207
           LEAFPTRDKERILTAI+KYSSS LQI
Sbjct: 181 LEAFPTRDKERILTAITKYSSSPLQI 206

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BLAST of HG10004942 vs. NCBI nr
Match: KAE8652091.1 (hypothetical protein Csa_022233 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 4.2e-88
Identity = 162/182 (89.01%), Postives = 172/182 (94.51%), Query Frame = 0


Query: 25  VESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLFKSKIRVGAGNQGELFDEDDELCPV 84
           +E R PI IPRWLSSE+  VRLSITR EVPR+QLL+KSK+RV AGNQGEL DEDD+LCPV
Sbjct: 1   MEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLYKSKMRVNAGNQGELSDEDDDLCPV 60

Query: 85  DCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVI 144
           DCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQ+APVI
Sbjct: 61  DCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQQAPVI 120

Query: 145 FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYSSSAL 204
           FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAI+KYSSS L
Sbjct: 121 FLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAITKYSSSPL 180

Query: 205 QI 207
           QI
Sbjct: 181 QI 182

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BLAST of HG10004942 vs. ExPASy Swiss-Prot
Match: Q9C5C5 (Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07700 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.4e-57
Identity = 114/173 (65.90%), Postives = 134/173 (77.46%), Query Frame = 0


Query: 35  RWLSSERGQVRLSITRTEVPRHQLLFKSKIR-----VGAGNQGELFDEDDELCPVDCVRE 94
           RW+    G VRLS  R E   +  +  +  R     +   N  EL DE+D+LCPV+CV E
Sbjct: 31  RWVWHNNG-VRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTE 90

Query: 95  FKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHN 154
           FKTD+E L +L+++KE  +LVVVDFYRT+CGSCKYIEQGF+KLCK SGDQEAPVIFLKHN
Sbjct: 91  FKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHN 150

Query: 155 VMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYSSS 203
           V+DEYDEQSEVAERLRIK VPLFHFYK+GVLLE+F TRDKERI  AI KY+SS
Sbjct: 151 VVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 202

[Close]

BLAST of HG10004942 vs. ExPASy Swiss-Prot
Match: Q6YTI3 (Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0567100 PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.7e-52
Identity = 94/126 (74.60%), Postives = 111/126 (88.10%), Query Frame = 0


Query: 76  DEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKG 135
           +E++E CPV+CV EFKT+EE  ++L+RAK  GALVVVDF+R SCGSCKYIEQGF KLCKG
Sbjct: 74  EEEEEFCPVECVTEFKTEEELARVLERAKATGALVVVDFFRPSCGSCKYIEQGFMKLCKG 133

Query: 136 SGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTA 195
           SGD  + V+FLKHNV+DEYDEQSEVA+RLRIK VPLFHFYK+GVLLEAF TRDKERI+ A
Sbjct: 134 SGDHGSSVVFLKHNVIDEYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFATRDKERIIAA 193

Query: 196 ISKYSS 202
           I KY++
Sbjct: 194 IQKYTA 199

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BLAST of HG10004942 vs. ExPASy Swiss-Prot
Match: P10639 (Thioredoxin OS=Mus musculus OX=10090 GN=Txn PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-09
Identity = 40/114 (35.09%), Postives = 63/114 (55.26%), Query Frame = 0


Query: 87  VREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFL 146
           V+  ++ E F + L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 147 KHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYS 201
           + +V    D+  +VA    +K +P F FYK G  +  F   +KE++  +I++Y+
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105

[Close]

BLAST of HG10004942 vs. ExPASy Swiss-Prot
Match: P11232 (Thioredoxin OS=Rattus norvegicus OX=10116 GN=Txn PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 9.1e-09
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 87  VREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFL 146
           V+  ++ E F + L  A +   LVVVDF  T CG CK I+  F  LC    D+ + V+FL
Sbjct: 2   VKLIESKEAFQEALAAAGDK--LVVVDFSATWCGPCKMIKPFFHSLC----DKYSNVVFL 61

Query: 147 KHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYS 201
           + +V    D+  +VA    +K +P F FYK G  +  F   +KE++   I++++
Sbjct: 62  EVDV----DDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEATITEFA 105

[Close]

BLAST of HG10004942 vs. ExPASy Swiss-Prot
Match: Q42403 (Thioredoxin H3 OS=Arabidopsis thaliana OX=3702 GN=TRX3 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.1e-09
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 92  TDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHNVM 151
           T E++ + L  A E+  L+V+DF  T C  C++I   FA L K    +   V+F K +V 
Sbjct: 12  TVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAK----KHLDVVFFKVDV- 71

Query: 152 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYSS 202
              DE + VAE  +++ +P F F K+G + E      KE I+  + K+ +
Sbjct: 72  ---DELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKT 113

[Close]

BLAST of HG10004942 vs. ExPASy TrEMBL
Match: A0A0A0LP39 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357300 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.3e-102
Identity = 184/206 (89.32%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MQRQNQNVLQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLF 60
           MQRQNQNVLQCK LISFGLNPNE++E R PI IPRWLSSE+  VRLSITR EVPR+QLL+
Sbjct: 1   MQRQNQNVLQCKTLISFGLNPNEKMEPRIPILIPRWLSSEKEPVRLSITRPEVPRNQLLY 60

Query: 61  KSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCG 120
           KSK+RV AGNQGEL DEDD+LCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGELSDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180
           SCKYIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180

Query: 181 LEAFPTRDKERILTAISKYSSSALQI 207
           LEAFPTRDKERILTAI+KYSSS LQI
Sbjct: 181 LEAFPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of HG10004942 vs. ExPASy TrEMBL
Match: A0A1S3BBI1 (thioredoxin-like 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487891 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 7.3e-102
Identity = 183/206 (88.83%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MQRQNQNVLQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLF 60
           MQRQNQNVLQCK LISFGL+PNE++ESR PI IPRWLSSE+  VRLSITR EVPRHQLL+
Sbjct: 1   MQRQNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVPRHQLLY 60

Query: 61  KSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCG 120
           KSK+RV AGNQGE+ DEDD+LCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180
           SCKYIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRIK+VPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVL 180

Query: 181 LEAFPTRDKERILTAISKYSSSALQI 207
           LEAFPTRDKERILTAI+KYSSS LQI
Sbjct: 181 LEAFPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of HG10004942 vs. ExPASy TrEMBL
Match: A0A5A7UYD0 (Thioredoxin-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00350 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 6.2e-101
Identity = 182/206 (88.35%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MQRQNQNVLQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVPRHQLLF 60
           MQRQNQNVLQCK LISFGL+PNE++ESR PI IPRWLSSE+  VRLSITR EV RHQLL+
Sbjct: 1   MQRQNQNVLQCKTLISFGLHPNEKLESRIPILIPRWLSSEKEPVRLSITRPEVQRHQLLY 60

Query: 61  KSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCG 120
           KSK+RV AGNQGE+ DEDD+LCPVDCVREFKTDEEF+KILD+AKENG LVVVDFYRTSCG
Sbjct: 61  KSKMRVNAGNQGEMGDEDDDLCPVDCVREFKTDEEFIKILDKAKENGGLVVVDFYRTSCG 120

Query: 121 SCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVL 180
           SCKYIEQGFAKLCKGSGDQ+APVIFLKHNVMDEYDEQSEVAERLRIK+VPLFHFYKDGVL
Sbjct: 121 SCKYIEQGFAKLCKGSGDQQAPVIFLKHNVMDEYDEQSEVAERLRIKSVPLFHFYKDGVL 180

Query: 181 LEAFPTRDKERILTAISKYSSSALQI 207
           LEAFPTRDKERILTAI+KYSSS LQI
Sbjct: 181 LEAFPTRDKERILTAITKYSSSPLQI 206

[Close]

BLAST of HG10004942 vs. ExPASy TrEMBL
Match: A0A6J1CRI9 (thioredoxin-like 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013927 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 7.8e-88
Identity = 166/203 (81.77%), Postives = 180/203 (88.67%), Query Frame = 0


Query: 9   LQCKALISFGLNPNEEVESRFPISIPRWLSSERGQVRLSITRTEVP-----RHQLLFKSK 68
           + C AL S GLNPNEE+ESR PISIP   S E+G VRLSI+R ++P     RHQ LF+S+
Sbjct: 53  MYCSALFSSGLNPNEELESRIPISIPS-RSFEKGHVRLSISRPQLPSSLNIRHQFLFESR 112

Query: 69  IRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDFYRTSCGSCK 128
           IRV AG+QG L DEDD+LCPVDCVREFKTDE+FLKILDRAKE GALVVVDFYRTSCGSCK
Sbjct: 113 IRVAAGSQGGLSDEDDDLCPVDCVREFKTDEDFLKILDRAKETGALVVVDFYRTSCGSCK 172

Query: 129 YIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEA 188
           YIEQGFAKLCKGSGD+E PVIFLKHNV+DEYDEQSEVAERLRI+TVPLFHFYKDGVLLEA
Sbjct: 173 YIEQGFAKLCKGSGDEETPVIFLKHNVIDEYDEQSEVAERLRIRTVPLFHFYKDGVLLEA 232

Query: 189 FPTRDKERILTAISKYSSSALQI 207
           FPTRDKERIL AISKYSSSALQI
Sbjct: 233 FPTRDKERILAAISKYSSSALQI 254

[Close]

BLAST of HG10004942 vs. ExPASy TrEMBL
Match: A0A6J1GH82 (thioredoxin-like 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454145 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.3e-87
Identity = 170/212 (80.19%), Postives = 187/212 (88.21%), Query Frame = 0


Query: 1   MQRQNQNVLQCKALISFGLNPNEEVESR-FPISIPRWLSSERGQVRLSITRTEVP----- 60
           MQRQNQNVL+CKAL+S G     ++ESR  PISIP WL SE   VRLSITR E P     
Sbjct: 39  MQRQNQNVLKCKALLSVG-----KLESRIIPISIPFWL-SENPHVRLSITRPEAPPYLSI 98

Query: 61  RHQLLFKSKIRVGAGNQGELFDEDDELCPVDCVREFKTDEEFLKILDRAKENGALVVVDF 120
           RH+L+FKSK RV AGNQG L DEDD+LCPV+CVREFKTDEEF++IL+RAKE+GALVVVDF
Sbjct: 99  RHELMFKSKPRVAAGNQGGLSDEDDDLCPVECVREFKTDEEFIRILERAKESGALVVVDF 158

Query: 121 YRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDEYDEQSEVAERLRIKTVPLFHF 180
           YRTSCGSCKYIEQGFAKLC+GSGDQEAPVIFLKHNV+DEYDEQSEVAERLRIKTVPLFHF
Sbjct: 159 YRTSCGSCKYIEQGFAKLCRGSGDQEAPVIFLKHNVVDEYDEQSEVAERLRIKTVPLFHF 218

Query: 181 YKDGVLLEAFPTRDKERILTAISKYSSSALQI 207
           YKDGVLLEAFPTRDKERIL AI+KYSS+ALQ+
Sbjct: 219 YKDGVLLEAFPTRDKERILAAITKYSSTALQL 244

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BLAST of HG10004942 vs. TAIR 10
Match: AT1G07700.1 (Thioredoxin superfamily protein )

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-58
Identity = 114/173 (65.90%), Postives = 134/173 (77.46%), Query Frame = 0


Query: 35  RWLSSERGQVRLSITRTEVPRHQLLFKSKIR-----VGAGNQGELFDEDDELCPVDCVRE 94
           RW+    G VRLS  R E   +  +  +  R     +   N  EL DE+D+LCPV+CV E
Sbjct: 31  RWVWHNNG-VRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTE 90

Query: 95  FKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHN 154
           FKTD+E L +L+++KE  +LVVVDFYRT+CGSCKYIEQGF+KLCK SGDQEAPVIFLKHN
Sbjct: 91  FKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHN 150

Query: 155 VMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYSSS 203
           V+DEYDEQSEVAERLRIK VPLFHFYK+GVLLE+F TRDKERI  AI KY+SS
Sbjct: 151 VVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 202

[Close]

BLAST of HG10004942 vs. TAIR 10
Match: AT1G07700.3 (Thioredoxin superfamily protein )

HSP 1 Score: 223.4 bits (568), Expect = 1.7e-58
Identity = 114/173 (65.90%), Postives = 134/173 (77.46%), Query Frame = 0


Query: 35  RWLSSERGQVRLSITRTEVPRHQLLFKSKIR-----VGAGNQGELFDEDDELCPVDCVRE 94
           RW+    G VRLS  R E   +  +  +  R     +   N  EL DE+D+LCPV+CV E
Sbjct: 44  RWVWHNNG-VRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTE 103

Query: 95  FKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHN 154
           FKTD+E L +L+++KE  +LVVVDFYRT+CGSCKYIEQGF+KLCK SGDQEAPVIFLKHN
Sbjct: 104 FKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHN 163

Query: 155 VMDEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYSSS 203
           V+DEYDEQSEVAERLRIK VPLFHFYK+GVLLE+F TRDKERI  AI KY+SS
Sbjct: 164 VVDEYDEQSEVAERLRIKAVPLFHFYKNGVLLESFATRDKERIDAAILKYTSS 215

[Close]

BLAST of HG10004942 vs. TAIR 10
Match: AT1G07700.2 (Thioredoxin superfamily protein )

HSP 1 Score: 176.0 bits (445), Expect = 3.1e-44
Identity = 89/142 (62.68%), Postives = 107/142 (75.35%), Query Frame = 0


Query: 35  RWLSSERGQVRLSITRTEVPRHQLLFKSKIR-----VGAGNQGELFDEDDELCPVDCVRE 94
           RW+    G VRLS  R E   +  +  +  R     +   N  EL DE+D+LCPV+CV E
Sbjct: 31  RWVWHNNG-VRLSFPRAESSINITMGCTLQRGIAKSLSQENLVELSDENDDLCPVECVTE 90

Query: 95  FKTDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHN 154
           FKTD+E L +L+++KE  +LVVVDFYRT+CGSCKYIEQGF+KLCK SGDQEAPVIFLKHN
Sbjct: 91  FKTDDELLSVLEKSKETNSLVVVDFYRTACGSCKYIEQGFSKLCKQSGDQEAPVIFLKHN 150

Query: 155 VMDEYDEQSEVAERLRIKTVPL 172
           V+DEYDEQSEVAERLRIK +PL
Sbjct: 151 VVDEYDEQSEVAERLRIKVIPL 171

[Close]

BLAST of HG10004942 vs. TAIR 10
Match: AT5G42980.1 (thioredoxin 3 )

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-10
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 0


Query: 92  TDEEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHNVM 151
           T E++ + L  A E+  L+V+DF  T C  C++I   FA L K    +   V+F K +V 
Sbjct: 12  TVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAK----KHLDVVFFKVDV- 71

Query: 152 DEYDEQSEVAERLRIKTVPLFHFYKDGVLLEAFPTRDKERILTAISKYSS 202
              DE + VAE  +++ +P F F K+G + E      KE I+  + K+ +
Sbjct: 72  ---DELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKT 113

[Close]

BLAST of HG10004942 vs. TAIR 10
Match: AT4G26160.1 (atypical CYS HIS rich thioredoxin 1 )

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-09
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 94  EEFLKILDRAKENGALVVVDFYRTSCGSCKYIEQGFAKLCKGSGDQEAPVIFLKHNVMDE 153
           E+FL  L  A +   LV+VDFY T CGSC+ +   F KLCK +  +   ++FLK N    
Sbjct: 102 EQFLNALKDAGDR--LVIVDFYGTWCGSCRAM---FPKLCK-TAKEHPNILFLKVN---- 161

Query: 154 YDEQSEVAERLRIKTVPLFHFYK 177
           +DE   + + L +K +P FHFY+
Sbjct: 162 FDENKSLCKSLNVKVLPYFHFYR 174

The following BLAST results are available for this feature:

BLAST of HG10004942 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886222.1	1.8e-107	95.15	thioredoxin-like 4, chloroplastic [Benincasa hispida] >XP_038886223.1 thioredoxi...	[more]
XP_008444622.1	1.5e-101	88.83	PREDICTED: thioredoxin-like 4, chloroplastic [Cucumis melo]	[more]
XP_004150883.1	1.5e-101	89.32	thioredoxin-like 4, chloroplastic [Cucumis sativus] >XP_011649582.1 thioredoxin-...	[more]
KAA0060902.1	1.3e-100	88.35	thioredoxin-like 4 [Cucumis melo var. makuwa]	[more]
KAE8652091.1	4.2e-88	89.01	hypothetical protein Csa_022233 [Cucumis sativus]	[more]

BLAST of HG10004942 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5C5	2.4e-57	65.90	Thioredoxin-like 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g07700 P...	[more]
Q6YTI3	1.7e-52	74.60	Thioredoxin-like 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
P10639	2.4e-09	35.09	Thioredoxin OS=Mus musculus OX=10090 GN=Txn PE=1 SV=3	[more]
P11232	9.1e-09	34.21	Thioredoxin OS=Rattus norvegicus OX=10116 GN=Txn PE=1 SV=2	[more]
Q42403	9.1e-09	32.73	Thioredoxin H3 OS=Arabidopsis thaliana OX=3702 GN=TRX3 PE=1 SV=1	[more]

BLAST of HG10004942 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP39	7.3e-102	89.32	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G357300...	[more]
A0A1S3BBI1	7.3e-102	88.83	thioredoxin-like 4, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487891 PE=4 S...	[more]
A0A5A7UYD0	6.2e-101	88.35	Thioredoxin-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G0...	[more]
A0A6J1CRI9	7.8e-88	81.77	thioredoxin-like 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013927...	[more]
A0A6J1GH82	1.3e-87	80.19	thioredoxin-like 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454145 ...	[more]

BLAST of HG10004942 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07700.1	1.7e-58	65.90	Thioredoxin superfamily protein	[more]
AT1G07700.3	1.7e-58	65.90	Thioredoxin superfamily protein	[more]
AT1G07700.2	3.1e-44	62.68	Thioredoxin superfamily protein	[more]
AT5G42980.1	6.5e-10	32.73	thioredoxin 3	[more]
AT4G26160.1	1.1e-09	40.96	atypical CYS HIS rich thioredoxin 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 92..195 e-value: 5.3E-11 score: 42.4
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 62..201 score: 9.384512
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 76..204 e-value: 3.4E-19 score: 70.8
None	No IPR available	CDD	cd02947	TRX_family	coord: 94..184 e-value: 2.50348E-18 score: 74.5168
IPR044176	Thioredoxin-like 4, chloroplastic	PANTHER	PTHR47912	THIOREDOXIN-LIKE 4, CHLOROPLASTIC	coord: 61..203
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 85..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004942.1	HG10004942.1	mRNA